# List of top-scoring protein chains for t06-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1musA 477 1.88e+00 c.55.3.4 79494 2fpqA 444 2.64e+00 2bogX 286 3.07e+00 2b8nA 429 3.96e+00 1xqaA 113 4.37e+00 1wdcC 156 4.46e+00 1wdcC a.39.1.5 17317 2az4A 429 4.57e+00 1j1lA 290 5.15e+00 b.82.1.12 90766 1tdzA 272 5.33e+00 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1rypA 243 6.21e+00 1pmaA d.153.1.4 41932 1kxoA 184 6.39e+00 b.60.1.1 84475 1u9aA 160 7.07e+00 1u9aA d.20.1.1 38333 1obbA 480 7.11e+00 c.2.1.5,d.162.1.2 86760,86761 1r1hA 696 7.62e+00 d.92.1.4 104756 1r6uA 437 7.89e+00 c.26.1.1 97163 2grrA 161 8.05e+00 1hyoA 421 9.03e+00 1qcnA b.34.8.1,d.177.1.1 59001,59002 1v8bA 479 9.54e+00 2fokA 579 9.56e+00 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1xhcA 367 9.72e+00 1pzxA 289 1.00e+01 c.119.1.1 95484 1zy9A 564 1.01e+01 1k7hA 476 1.03e+01 c.76.1.1 72101 2cglA 489 1.05e+01 1lldA 319 1.06e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1exrA 148 1.08e+01 1cll a.39.1.5 17299 1nrjA 158 1.11e+01 d.110.4.4 86124 1vixA 420 1.12e+01 c.56.5.4,d.58.19.1 100777,100778 1o7fA 469 1.14e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2iu5A 195 1.25e+01 1zc6A 305 1.26e+01 1sk7A 198 1.27e+01 a.132.1.2 105671 1z1lA 345 1.38e+01 1kqfB 294 1.40e+01 d.58.1.5,f.23.22.1 75900,75901 2f3yA 148 1.41e+01 1whsA 255 1.42e+01 1ivyA c.69.1.5 34649 1jnrA 643 1.42e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1pprM 312 1.44e+01 1pprM a.131.1.1,a.131.1.1 19502,19503 1eu8A 409 1.49e+01 1eu8A c.94.1.1 59502 1b7yB 785 1.50e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 2fjbA 643 1.56e+01 1f8rA 498 1.58e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1ct9A 553 1.61e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1ak0 270 1.68e+01 1ak0 a.124.1.2 19345 1b5qA 472 1.71e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1rqbA 539 1.73e+01 a.5.7.2,c.1.10.5 105057,105058 1rvkA 382 1.82e+01 c.1.11.2,d.54.1.1 97928,97929 2a2kA 175 1.91e+01 1ee8A 266 1.91e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1ggzA 148 1.98e+01 a.39.1.5 70176 1hfuA 503 2.01e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1jl5A 454 2.07e+01 c.10.2.6 66830 1j1nA 492 2.09e+01 c.94.1.1 83978 1sffA 426 2.10e+01 c.67.1.4 105482 1yw5A 177 2.13e+01 1io0A 185 2.15e+01 c.10.1.1 76753 1owlA 484 2.18e+01 a.99.1.1,c.28.1.1 93647,93648 1nf2A 268 2.18e+01 c.108.1.10 91849 2f2hA 773 2.21e+01 1e4mM 501 2.22e+01 1e70M c.1.8.4 59226 1yh2A 175 2.24e+01 2ck3A 510 2.26e+01 1ty0A 211 2.28e+01 b.40.2.2,d.15.6.1 107440,107441 1vgmA 378 2.28e+01 1u0mA 382 2.28e+01 c.95.1.2,c.95.1.2 107557,107558 1h9hE 223 2.29e+01 b.47.1.2 103810 1l8aA 886 2.31e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1p5dX 463 2.34e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1w77A 228 2.35e+01 1h0hA 977 2.43e+01 b.52.2.2,c.81.1.1 76435,76436 1ek9A 428 2.46e+01 1ek9A f.5.1.1 43809 1v54E 109 2.55e+01 a.118.11.1 100326 1hqsA 423 2.57e+01 1iso c.77.1.1 61154 1oc2A 348 2.59e+01 c.2.1.2 92765 2asbA 251 2.62e+01 2a1hA 365 2.65e+01 1ejxC 567 2.66e+01 b.92.1.1,c.1.9.2 83184,83185 1lwdA 413 2.67e+01 c.77.1.1 78265 1dm5A 315 2.69e+01 1avc a.65.1.1 18186 1io1A 398 2.71e+01 1io1A e.32.1.1 62611 1qv9A 283 2.80e+01 c.127.1.1 96356 1gppA 237 2.82e+01 b.86.1.2 76262 1xpmA 396 2.85e+01 1d7uA 433 2.90e+01 2dkb c.67.1.4 34439 1sauA 115 2.94e+01 1lopA 164 2.96e+01 2cpl b.62.1.1 27510 1ta8A 332 2.97e+01 2a74A 643 2.99e+01 1iyeA 309 3.05e+01 e.17.1.1 83786 1a0cA 438 3.11e+01 1a0cA c.1.15.3 29529 1vkmA 297 3.12e+01 c.138.1.1 108670 1p1mA 406 3.15e+01 b.92.1.4,c.1.9.9 87696,87697 1wxcB 134 3.19e+01 1u69A 163 3.24e+01 d.32.1.7 107699 2gjgA 248 3.29e+01 2acvA 463 3.32e+01 1nd4A 264 3.47e+01 d.144.1.6 91815 1gu7A 364 3.48e+01 b.35.1.2,c.2.1.1 83321,83322 1eluA 390 3.53e+01 1elqA c.67.1.3 34434 1zcdA 388 3.54e+01 1auoA 218 3.55e+01 1auoA c.69.1.14 34716 2bdeA 470 3.73e+01 2a3qA 170 3.73e+01 2sns 149 3.78e+01 1snc b.40.1.1 24860 1k8kA 418 3.83e+01 c.55.1.1,c.55.1.1 68305,68306 1twuA 139 3.85e+01 d.32.1.8 107413 1fseA 74 3.86e+01 1fseA a.4.6.2 60000 2gjlA 328 3.87e+01 1w2fA 276 3.87e+01 d.143.1.3 109125 1gr0A 367 3.87e+01 c.2.1.3,d.81.1.3 70379,70380 1vlyA 338 3.94e+01 b.44.2.1,d.250.1.1 108871,108872 1jsdB 176 3.95e+01 h.3.1.1 63259 2gupA 292 3.96e+01 2f91A 237 4.02e+01 1ok7A 366 4.06e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1y9aA 360 4.07e+01 1eexB 224 4.08e+01 1dioB c.51.3.1 33213 1sznA 417 4.09e+01 b.71.1.1,c.1.8.1 106162,106163 1vetA 124 4.09e+01 d.110.7.1 108553 1v4vA 376 4.10e+01 c.87.1.3 100313 1pjr 724 4.11e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1nu5A 370 4.13e+01 c.1.11.2,d.54.1.1 92183,92184 1f0kA 364 4.20e+01 1f0kA c.87.1.2 35465 1yhtA 367 4.20e+01 1eejA 216 4.24e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1zkpA 268 4.29e+01 1q1uA 144 4.30e+01 b.42.1.1 95608 1wmhA 89 4.31e+01 1r1qA 100 4.36e+01 d.93.1.1 104763 2fbwC 141 4.37e+01 2ahqA 76 4.37e+01 1s83A 223 4.40e+01 b.47.1.2 98718 1xd8A 289 4.43e+01 1pc3A 350 4.44e+01 c.94.1.1 104102 2ap1A 327 4.45e+01 1lqaA 346 4.49e+01 c.1.7.1 84674 1zu0A 529 4.50e+01 1xesA 413 4.58e+01 2gq1A 332 4.66e+01 1r59O 505 4.68e+01 1lml 478 4.69e+01 1lml d.92.1.3 40295 2gnoA 305 4.72e+01 1xahA 354 4.77e+01 1ytvA 366 4.80e+01 1yx1A 264 4.80e+01 1q4gA 553 4.88e+01 a.93.1.2,g.3.11.1 95789,95790 1aym1 285 4.91e+01 1aym1 1ji6A 589 5.00e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1h3qA 140 5.01e+01 d.110.4.3 76652 1wycA 392 5.02e+01 2db0A 253 5.03e+01 1ov2A 99 5.13e+01 a.13.1.1 93580 1h7sA 365 5.23e+01 d.14.1.3,d.122.1.2 65705,65706 2fymA 431 5.27e+01 2h88C 140 5.28e+01 2eu9A 355 5.32e+01 1r89A 437 5.35e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1gd8A 118 5.36e+01 d.188.1.1 60445 1o5zA 442 5.39e+01 c.59.1.2,c.72.2.2 92530,92531 1wpnA 188 5.45e+01 1dkzA 219 5.53e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1feuA 206 5.63e+01 1feuA b.53.1.1 59801 1fipA 98 5.66e+01 1fipA a.4.1.12 18980 2f5xA 312 5.68e+01 2ffeA 311 5.71e+01 1ryoA 327 5.71e+01 c.94.1.2 98108 2gsfA 373 5.73e+01 1zczA 464 5.74e+01 1ox0A 430 5.77e+01 c.95.1.1,c.95.1.1 87495,87496 1nf9A 207 5.79e+01 c.33.1.3 85631 1v0wA 506 5.83e+01 d.136.1.2,d.136.1.2 108220,108221 1vhxA 150 5.87e+01 c.55.3.8 100712 1m15A 357 5.88e+01 a.83.1.1,d.128.1.2 78368,78369 2b99A 156 5.88e+01 1sq5A 308 5.91e+01 c.37.1.6 105882 1bif 469 5.91e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1jq5A 370 5.97e+01 e.22.1.2 67084 1cs0A 1073 6.22e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2a2cA 478 6.30e+01 1jsdA 319 6.30e+01 b.19.1.2 63258 1pixA 587 6.32e+01 c.14.1.4 94708 1or0B 528 6.33e+01 2fi9A 128 6.38e+01 2ffsA 157 6.41e+01 2aaxA 275 6.43e+01 1aoy 78 6.44e+01 1aoy a.4.5.3 16087 1wcgA 464 6.46e+01 1n35A 1267 6.47e+01 e.8.1.4 79935 1i19A 561 6.50e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 2ew0A 192 6.50e+01 2bvfA 459 6.52e+01 1umgA 362 6.57e+01 d.280.1.1 107956 2fgeA 995 6.58e+01 1mzhA 225 6.62e+01 c.1.10.1 79698 1noyA 388 6.73e+01 1clqA c.55.3.5 33713 1h6dA 433 6.73e+01 c.2.1.3,d.81.1.5 65656,65657 1g8aA 227 6.74e+01 c.66.1.3 90506 1usyA 275 6.75e+01 1cnv 299 6.80e+01 1cnv c.1.8.5 28989 1sx7A 164 6.88e+01 1jggA 60 6.90e+01 2hddA a.4.1.1 62950 2ff4A 388 6.90e+01 1zk7A 467 6.92e+01 1qqqA 264 6.99e+01 1bkpA d.117.1.1 40931 2bcqA 335 7.10e+01 1tuoA 464 7.13e+01 2cunA 410 7.16e+01 2fjlA 150 7.17e+01 1ghhA 81 7.18e+01 1ghhA d.57.1.1 38940 1g94A 448 7.26e+01 b.71.1.1,c.1.8.1 65169,65170 2amdA 311 7.27e+01 1xpkC 388 7.28e+01 1v93A 296 7.42e+01 c.1.23.1 100532 1no7A 604 7.47e+01 e.48.1.1 92016 1kveB 77 7.50e+01 1kveB 1cghA 224 7.55e+01 1a7s b.47.1.2 26290 1ww9A 392 7.61e+01 2d7vA 162 7.68e+01 1w79A 489 7.68e+01 2b0tA 738 7.69e+01 2cvzA 289 7.69e+01 1jyrA 96 7.72e+01 d.93.1.1 71969 2ga9D 469 7.73e+01 1u24A 337 7.83e+01 1cpo 299 7.94e+01 1cpo a.39.3.1,a.39.3.1 17390,17391 1ojrA 274 8.01e+01 c.74.1.1 93147 1xl7A 612 8.12e+01 1sc3A 178 8.22e+01 c.17.1.1 105416 1avaC 181 8.32e+01 1avaC b.42.4.1 25604 1ig8A 486 8.37e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 2g50A 530 8.45e+01 2f7fA 494 8.48e+01 1lkkA 105 8.53e+01 1lckA d.93.1.1 40412 1zmdA 474 8.56e+01 1zaiA 363 8.61e+01 1qi9A 556 8.61e+01 1qhbA a.111.1.2 19053 1wljA 189 8.65e+01 1s1dA 331 8.70e+01 b.67.3.1 98344 1rdfA 267 8.75e+01 c.108.1.3 104884 1vjpA 394 8.80e+01 c.2.1.3,d.81.1.3 100828,100829 1l3iA 192 8.86e+01 c.66.1.22 77676 1m5wA 243 8.91e+01 c.1.24.1 84836 1qw9A 502 8.92e+01 b.71.1.2,c.1.8.3 96466,96467 1lehA 364 8.94e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916