# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1u9aA 160 1.94e-01 1u9aA d.20.1.1 38333 2grrA 161 3.08e-01 1h2kA 349 9.40e-01 b.82.2.6 76572 1uujA 88 1.03e+00 a.221.1.1 108046 1swvA 267 1.21e+00 2ahqA 76 1.27e+00 1fseA 74 1.35e+00 1fseA a.4.6.2 60000 1z8uA 102 1.74e+00 1wxcB 134 1.78e+00 1exrA 148 1.82e+00 1cll a.39.1.5 17299 1h6dA 433 2.09e+00 c.2.1.3,d.81.1.5 65656,65657 1b5pA 385 2.15e+00 c.67.1.1 90403 1xqaA 113 2.25e+00 1wg8A 285 2.89e+00 2a3qA 170 2.90e+00 1rypA 243 3.20e+00 1pmaA d.153.1.4 41932 2h88C 140 3.38e+00 2cglA 489 3.51e+00 1sjiA 350 4.01e+00 1mlwA 301 4.98e+00 d.178.1.1 79289 1z5bA 469 5.05e+00 2fbwC 141 5.12e+00 2ap1A 327 5.19e+00 1gu7A 364 5.22e+00 b.35.1.2,c.2.1.1 83321,83322 2aeuA 374 5.37e+00 1uj8A 77 5.38e+00 1a8y 367 5.44e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1wx1A 335 5.60e+00 1jl5A 454 6.39e+00 c.10.2.6 66830 1f20A 435 6.43e+00 b.43.4.1,c.25.1.4 64932,64933 1nvvS 481 6.62e+00 a.117.1.1 86279 1hl9A 449 6.90e+00 b.71.1.3,c.1.8.11 90650,90651 1aj8A 371 7.00e+00 1aj8A a.103.1.1 18900 1ajsA 412 7.01e+00 1ajsA c.67.1.1 34276 1sziA 247 7.03e+00 a.24.23.1 106159 1up8A 598 7.08e+00 a.111.1.2 99710 1ggzA 148 7.56e+00 a.39.1.5 70176 1jsdA 319 7.86e+00 b.19.1.2 63258 1wijA 140 8.05e+00 1m3qA 317 8.09e+00 a.96.1.3,d.129.1.2 91184,91185 1q1vA 70 8.12e+00 a.159.4.1 104479 1vgmA 378 8.44e+00 1jy2O 56 8.47e+00 h.1.8.1 67441 1yirA 408 8.50e+00 2f3yA 148 8.82e+00 1sauA 115 9.10e+00 2ddrA 306 9.12e+00 1nepA 130 9.30e+00 b.1.18.7 80440 1ztpA 251 9.51e+00 2ajrA 331 9.56e+00 1wzvA 155 9.72e+00 1w77A 228 9.76e+00 2db9A 149 1.12e+01 1yf2A 425 1.15e+01 2b20A 403 1.17e+01 1xdfA 157 1.17e+01 1yovA 537 1.22e+01 1o04A 500 1.22e+01 c.82.1.1 86508 2fi9A 128 1.23e+01 1lkkA 105 1.26e+01 1lckA d.93.1.1 40412 1yf9A 171 1.26e+01 1v54E 109 1.28e+01 a.118.11.1 100326 1twiA 434 1.32e+01 b.49.2.3,c.1.6.1 107399,107400 1uqvA 85 1.33e+01 a.60.1.2 99798 2fa8A 105 1.33e+01 1r0pA 312 1.36e+01 d.144.1.7 96734 1p5zB 263 1.37e+01 c.37.1.1 87815 1g4wR 383 1.39e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 2bogX 286 1.42e+01 1r1qA 100 1.45e+01 d.93.1.1 104763 1shuX 182 1.46e+01 c.62.1.1 98882 1o5kA 306 1.49e+01 c.1.10.1 92504 1k8rB 110 1.52e+01 d.15.1.5 72180 1sflA 238 1.54e+01 1td6A 306 1.54e+01 1kveB 77 1.56e+01 1kveB 1jggA 60 1.62e+01 2hddA a.4.1.1 62950 1nrjA 158 1.62e+01 d.110.4.4 86124 1a8d 452 1.63e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1nkpB 83 1.67e+01 a.38.1.1 80574 1yx1A 264 1.70e+01 1btkA 169 1.72e+01 1btkA b.55.1.1 26959 1uwcA 261 1.77e+01 c.69.1.17 100101 1qgtA 149 1.78e+01 1qgtA a.62.1.1 18135 1sk4A 163 1.81e+01 d.118.1.1 105664 1nlwB 76 1.85e+01 a.38.1.1 80634 1dq3A 454 1.88e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1sxrA 183 1.89e+01 d.118.1.1 106101 1pzlA 237 1.94e+01 a.123.1.1 104393 1n82A 331 2.03e+01 c.1.8.3 91703 1fi2A 201 2.06e+01 1fi2A b.82.1.2 59845 1musA 477 2.07e+01 c.55.3.4 79494 1fipA 98 2.07e+01 1fipA a.4.1.12 18980 1na6A 404 2.09e+01 b.142.1.1,c.52.1.22 91748,91749 1hulA 108 2.17e+01 1hulA a.26.1.2 16865 1dekA 241 2.19e+01 1dekA c.37.1.1 31842 1ufzA 83 2.22e+01 a.5.9.1 107821 2et1A 201 2.26e+01 1i5pA 633 2.30e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1zb1A 392 2.31e+01 1n2zA 245 2.33e+01 c.92.2.2 79865 1lngA 87 2.36e+01 d.201.1.1 74045 1rdfA 267 2.39e+01 c.108.1.3 104884 2fj6A 82 2.39e+01 2a5lA 200 2.40e+01 1kxoA 184 2.61e+01 b.60.1.1 84475 2ck3A 510 2.62e+01 2g7uA 257 2.64e+01 1avsA 90 2.64e+01 1cll a.39.1.5 17226 1n4xH 120 2.74e+01 b.1.1.1 85324 1cg5B 141 2.74e+01 1cg5B a.1.1.2 15585 2aegA 268 2.76e+01 1zgdA 312 2.76e+01 1oywA 523 2.80e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1yvhA 329 2.83e+01 1wpiA 133 2.87e+01 1uvqA 197 2.91e+01 b.1.1.2,d.19.1.1 100062,100063 2fupA 168 2.92e+01 2f7fA 494 2.95e+01 1hs7A 97 3.00e+01 1hs7A a.47.2.1 61236 1qhtA 775 3.00e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1ov2A 99 3.04e+01 a.13.1.1 93580 1g8iA 190 3.08e+01 1rec a.39.1.5 60363 1d9cA 121 3.10e+01 1d9cA a.26.1.3 16901 3nul 130 3.20e+01 3nul d.110.1.1 40891 2f02A 323 3.22e+01 1q02A 52 3.25e+01 a.5.2.1 95490 1eqfA 280 3.26e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1b7yA 350 3.27e+01 1pysA d.104.1.1 40776 1ed8A 449 3.27e+01 1b8jA c.76.1.1 34988 2b8nA 429 3.31e+01 1ehiA 377 3.33e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1eu8A 409 3.40e+01 1eu8A c.94.1.1 59502 1ayaA 101 3.40e+01 1qadA d.93.1.1 40460 1j2mA 99 3.42e+01 a.165.1.1 84018 1kw4A 89 3.44e+01 a.60.1.2 73077 1sq5A 308 3.45e+01 c.37.1.6 105882 1gd8A 118 3.49e+01 d.188.1.1 60445 1fy7A 278 3.49e+01 1fy7A d.108.1.1 40817 1wmhA 89 3.52e+01 1go4A 205 3.58e+01 d.135.1.1 70292 1fjlA 81 3.59e+01 2hddA a.4.1.1 16017 1v4pA 157 3.60e+01 2c0rA 362 3.61e+01 1zd9A 188 3.65e+01 1uyrA 737 3.70e+01 c.14.1.4,c.14.1.4 100188,100189 1k04A 162 3.71e+01 a.24.14.1 67904 2ex5A 207 3.74e+01 2hddA 61 3.77e+01 2hddA a.4.1.1 15971 1mml 265 3.81e+01 1mml e.8.1.2 43015 2gh1A 301 3.87e+01 1gqeA 365 3.90e+01 e.38.1.1 70351 1k7hA 476 3.91e+01 c.76.1.1 72101 2gokA 429 4.00e+01 2fjlA 150 4.01e+01 1iirA 415 4.04e+01 1iirA c.87.1.5 62453 2al6A 375 4.12e+01 1zbqA 327 4.17e+01 1tkeA 224 4.18e+01 1sur 215 4.18e+01 1sur c.26.2.2 31620 1w6sB 74 4.19e+01 2c71A 216 4.23e+01 2gsfA 373 4.24e+01 1opjA 293 4.28e+01 d.144.1.7 87230 2dfkA 402 4.31e+01 1jpzA 473 4.32e+01 a.104.1.1 67069 1ars 396 4.35e+01 1ajsA c.67.1.1 34287 1uuhA 159 4.37e+01 d.169.1.4 100008 5pal 109 4.42e+01 1a75A a.39.1.4 17215 2bidA 197 4.44e+01 2bidA f.1.4.1 43398 1z02A 446 4.48e+01 1vhnA 318 4.50e+01 c.1.4.1 100693 1qnrA 344 4.57e+01 1qnoA c.1.8.3 28834 2cr9A 139 4.60e+01 2ae0X 345 4.61e+01 1ufiA 64 4.62e+01 a.30.4.1 99336 1oxwA 373 4.62e+01 c.19.1.3 87539 1i9zA 347 4.63e+01 1i9yA d.151.1.2 62102 1wvqA 167 4.68e+01 1zedA 484 4.72e+01 1h8eA 510 4.72e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1u19A 349 4.73e+01 1h97A 147 4.76e+01 1h97A a.1.1.2 60812 1zhcA 76 4.76e+01 2afdA 88 4.77e+01 2ga9D 469 4.80e+01 8rucI 123 4.82e+01 1rboC d.73.1.1 39629 1ti6A 875 4.83e+01 b.52.2.2,c.81.1.1 106974,106975 2bh8A 101 4.85e+01 1iyjB 817 4.85e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 1ygmA 118 4.87e+01 1g03A 134 4.88e+01 1qrjB a.73.1.1 60162 1sg7A 96 4.88e+01 1ox0A 430 4.92e+01 c.95.1.1,c.95.1.1 87495,87496 1u2eA 289 4.97e+01 1gwiA 411 4.99e+01 a.104.1.1 76364 2d7vA 162 5.00e+01 2bwfA 77 5.08e+01 2c5rA 67 5.15e+01 1u24A 337 5.18e+01 1oj4A 283 5.27e+01 d.14.1.5,d.58.26.5 93083,93084 2f96A 224 5.28e+01 1ug0A 88 5.29e+01 a.217.1.1 107822 1guxA 218 5.31e+01 1guxA a.74.1.3 18388 1zczA 464 5.34e+01 1wad 112 5.35e+01 3cyr a.138.1.1 19658 2a2pA 129 5.43e+01 1wdcC 156 5.44e+01 1wdcC a.39.1.5 17317 1r85A 379 5.54e+01 c.1.8.3 104839 1ywzA 175 5.56e+01 1o26A 232 5.56e+01 d.207.1.1 86566 1yzsA 121 5.60e+01 1ois 223 5.61e+01 1a36A e.15.1.1 43267 1xw3A 110 5.62e+01 1zo0A 126 5.62e+01 1zg2A 107 5.67e+01 1mai 131 5.74e+01 1mai b.55.1.1 26951 1w4tA 299 5.78e+01 1pw4A 451 5.81e+01 f.38.1.1 95198 1w9yA 319 5.83e+01 1xdzA 240 5.85e+01 1fcyA 236 5.89e+01 2lbd a.123.1.1 19282 1onwA 390 5.89e+01 b.92.1.7,c.1.9.13 87172,87173 1vknA 351 5.90e+01 c.2.1.3,d.81.1.1 108676,108677 1p5fA 189 6.02e+01 c.23.16.2 94142 1iapA 211 6.06e+01 a.91.1.1 62119 1yh2A 175 6.11e+01 2cx1A 187 6.12e+01 1yoeA 322 6.14e+01 1khyA 148 6.14e+01 a.174.1.1 77410 1t3iA 420 6.15e+01 c.67.1.3 106354 2dbgA 103 6.17e+01 1ww9A 392 6.19e+01 1k1fA 72 6.19e+01 a.147.1.1 68007 1wddS 128 6.20e+01 1gvfA 286 6.20e+01 c.1.10.2 70599 2g7jA 124 6.21e+01 1wgxA 73 6.30e+01 1vqoW 154 6.31e+01 2b0tA 738 6.33e+01 1h0hA 977 6.39e+01 b.52.2.2,c.81.1.1 76435,76436 1t00A 112 6.40e+01 1ylkA 172 6.41e+01 1upqA 123 6.47e+01 1zvkA 358 6.61e+01 1r8sA 164 6.63e+01 c.37.1.8 97247 1iqcA 308 6.66e+01 a.3.1.5,a.3.1.5 66266,66267 1jyrA 96 6.70e+01 d.93.1.1 71969 1xn5A 146 6.76e+01 1o0yA 260 6.77e+01 c.1.10.1 80756 1ckmA 330 6.78e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 2az0A 73 6.80e+01 1qj4A 257 6.82e+01 1qj4A c.69.1.20 34796 1b3uA 588 6.86e+01 1b3uA a.118.1.2 19135 2gaeA 346 6.93e+01 1omrA 201 6.94e+01 a.39.1.5 93349 2g0uA 92 6.96e+01 2f2lA 167 6.97e+01 1euhA 475 6.98e+01 1euhA c.82.1.1 35369 1ghhA 81 7.01e+01 1ghhA d.57.1.1 38940 1ah7 245 7.01e+01 1ah7 a.124.1.1 19339 1qx2A 76 7.02e+01 a.39.1.1 104622 2fulA 178 7.09e+01 1wcgA 464 7.11e+01 1xawA 140 7.17e+01 1l3kA 196 7.25e+01 d.58.7.1,d.58.7.1 73539,73540 1lu4A 136 7.26e+01 c.47.1.10 91124 2bycA 137 7.36e+01 2bjkA 516 7.38e+01 1yge 839 7.41e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1vlaA 150 7.43e+01 d.227.1.2 108735 1a92A 50 7.44e+01 1a92A h.4.6.1 45791 1yzmA 51 7.44e+01 1tazA 365 7.45e+01 a.211.1.2 106734 1nq7A 244 7.48e+01 a.123.1.1 92047 1x3lA 440 7.48e+01 1wdtA 665 7.51e+01 1yckA 175 7.52e+01 1urjA 1136 7.55e+01 2ffeA 311 7.56e+01 1mijA 152 7.61e+01 a.4.1.1 79150 1gvjA 146 7.61e+01 a.4.5.21 90525 1jr7A 311 7.63e+01 b.82.2.3 63255 1ii7A 333 7.67e+01 1ii7A d.159.1.4 62415 1l8dA 112 7.67e+01 h.4.12.1 73687 2gd5A 179 7.69e+01 1uzbA 516 7.70e+01 c.82.1.1 100220 1yeyA 444 7.71e+01 1lm8V 160 7.73e+01 b.3.3.1 74035 1d2vC 466 7.76e+01 1mhlC 1stzA 338 7.80e+01 a.4.5.51,d.110.2.3 106009,106010 1fmjA 351 7.87e+01 c.37.1.5 59879 1j54A 186 7.88e+01 c.55.3.5 77077 1gk8I 140 7.92e+01 d.73.1.1 65242 2b2yA 187 7.93e+01 1tzzA 392 7.95e+01 1hn0A 1021 7.98e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1uv7A 110 8.01e+01 d.67.4.1 100040 1qksA 567 8.04e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 2cohA 202 8.08e+01 2glzA 153 8.10e+01 1s9kD 53 8.13e+01 1kllA 130 8.17e+01 d.32.1.2 72720 1brwA 433 8.21e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1pufB 73 8.22e+01 a.4.1.1 95132 2dgkA 452 8.25e+01 1h32B 138 8.26e+01 a.3.1.1 76620 2ccjA 205 8.26e+01 1kvkA 395 8.28e+01 d.14.1.5,d.58.26.3 73060,73061 1ail 73 8.33e+01 1ail a.16.1.1 16381 1ig5A 75 8.35e+01 4icb a.39.1.1 62363 1knvA 293 8.41e+01 c.52.1.7 68707 1ig8A 486 8.44e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 2gl5A 410 8.45e+01 1x1rA 178 8.55e+01 1u8bA 133 8.67e+01 1obbA 480 8.70e+01 c.2.1.5,d.162.1.2 86760,86761 1ci4A 89 8.72e+01 1qckA a.60.5.1 17970 2g50A 530 8.79e+01 1hbnC 248 8.80e+01 1mroC d.58.31.1 60902 1xqoA 256 8.82e+01 1mvcA 240 8.84e+01 a.123.1.1 79499 1p68A 102 8.86e+01 k.8.1.1 94158 1v9mA 323 8.87e+01 f.40.1.1 100543 1z6oM 191 8.91e+01 1ujwB 135 8.99e+01 h.4.9.1 99472 1ldfA 281 9.00e+01 f.19.1.1 73845