(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0351 NESG:SR355, Bacillus subtilis, 117 res
                 10        20             30          40        50     
                 |         |              |           |         |     
   1 ...MILYDAIMYKYPNAVSRKDF.ELRNDG..NG..SY.IEKWNLR.APLPTQAELETWWEELQK
   2 ...MILYDAIMYKYPNAVSRKDF.ELRNDG..NG..SY.IEKWNLR.APLPTQAELETWWEELQK
   3 ...MNIGEAILFKYPTADPTKDF.IVQNNG..DGtpSY.IAEWNIR.APIPTEAELKTWWEELQS
   4 ldgRQYVTAVLYMYPNLDPQYDFgVVSSEG..KV..EA.FE-WNVKnITKPSIAQLDQAYKDYVK
   5 ...MNLALAVKYLFPDAIIGEDF.IIRDDG..DGrgQY.IETWRIS.APQPSEKELQEAWENYLE
   6 qn.ERIYEALRLMFPQADPLIAW.RLEQGPhtGG..QIaITQWNLP.DPQPTQAELDSAYAQLAK


           60        70        80        90        100       110       
           |         |         |         |          |         |       
   1 N..PPYEPPDQVELLAQELSQEKLARKQLEELNKTLGNEL.SDIKLSLLSLKGDYAELEHHHHHH
   2 N..PPYEPPDQVELLAQELSQEKLARKQLEELNKTLGNEL.SDIKLSLLSLKGDYAE--------
   3 T..SAYEPPVQVDLLARELSQEKLARKQLEELNQTLGSEL.SKIKLQLLTLQGGQGS--------
   4 SigSPSNPPA----LEPEVSKEASIGKILTEKFSAL-EEVnANMLLENLELQASLDKTKQQNSEL
   5 N..PVTDDP-QLSYTSQQL---------LK-----LGREM.SSLKLEILALKGEMTNGS------
   6 I..DRQAQ-IQRELDAIDLQSVRPVRAKLAGT--------.------------------------


         
        
   1 ...
   2 ...
   3 ...
   4 vfe
   5 ...
   6 ...