# List of top-scoring protein chains for T0351.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gd8A 118 6.37e-01 d.188.1.1 60445 1swvA 267 1.29e+00 1fezA 256 1.40e+00 1fezA c.108.1.3 43343 1rdfA 267 1.40e+00 c.108.1.3 104884 1rqlA 267 1.42e+00 c.108.1.3 97750 1rypA 243 1.52e+00 1pmaA d.153.1.4 41932 1g0uG 252 1.55e+00 d.153.1.4 41952 1khhA 198 1.70e+00 c.66.1.16 68615 1p1cA 199 1.70e+00 c.66.1.16 87669 1xclA 235 1.80e+00 1thtA 305 2.44e+00 1thtA c.69.1.13 34711 2ap1A 327 2.58e+00 1vorO 114 3.31e+00 1nkwL 116 3.34e+00 i.1.1.2 80597 1mu5A 471 3.89e+00 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1z5bA 469 3.89e+00 1mx0A 472 3.90e+00 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1vhfA 113 3.90e+00 d.58.5.2 100671 1gl6A 436 4.95e+00 c.37.1.11 70259 1e9rA 437 4.97e+00 c.37.1.11 64827 1jatB 138 5.40e+00 1jatB d.20.1.1 62819 1rxtA 496 8.23e+00 1fjcA 96 8.28e+00 1fjcA d.58.7.1 39212 1yoeA 322 8.81e+00 1ni5A 433 9.13e+00 c.26.2.5,d.229.1.1 80533,80534 1sk4A 163 9.18e+00 d.118.1.1 105664 1twqA 165 9.27e+00 1nknA 89 9.94e+00 h.1.26.1 85825 1c44A 123 1.00e+01 1qndA d.106.1.1 40795 1yirA 408 1.01e+01 1o5jA 113 1.04e+01 d.58.5.2 92503 1xm2A 173 1.11e+01 1qndA 123 1.18e+01 1qndA d.106.1.1 40794 1kr4A 125 1.19e+01 d.58.5.2 72889 1zclA 180 1.36e+01 1zckA 154 1.40e+01 1w77A 228 1.41e+01 1wp5A 323 1.45e+01 1rxdA 159 1.49e+01 1ksaA 366 1.65e+01 4bcl b.75.1.1 27969 1m50A 365 1.65e+01 b.75.1.1 78632 1exg 110 1.69e+01 1exg b.2.2.1 22387 2e2c 156 1.79e+01 1u9aA d.20.1.1 38336 1x24A 180 1.89e+01 1yrvA 169 1.99e+01 1uujA 88 2.18e+01 a.221.1.1 108046 2f51A 118 2.20e+01 2bjkA 516 2.28e+01 1uzbA 516 2.31e+01 c.82.1.1 100220 1wsrA 375 2.34e+01 1h2tC 723 2.46e+01 a.118.1.14,a.118.1.14,a.118.1.14 76580,76581,76582 1oepA 432 2.55e+01 c.1.11.1,d.54.1.1 86918,86919 1h2vC 771 2.58e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 1h6kA 757 2.58e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1qysA 106 2.59e+01 k.41.1.1 96603 1n52A 790 2.62e+01 a.118.1.14,a.118.1.14,a.118.1.14 79999,80000,80001 1kw4A 89 2.68e+01 a.60.1.2 73077 1xg7A 250 2.75e+01 1jd9A 453 2.82e+01 b.71.1.1,c.1.8.1 77106,77107 2al7A 186 2.85e+01 2cpjA 99 2.87e+01 1s67L 119 2.91e+01 d.110.3.2 105303 1gyrA 364 3.04e+01 b.35.1.2,c.2.1.1 83386,83387 1gu7A 364 3.06e+01 b.35.1.2,c.2.1.1 83321,83322 1f1sA 814 3.09e+01 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 1n9gB 386 3.13e+01 b.35.1.2,c.2.1.1 91722,91723 2b20A 403 3.20e+01 1u08A 386 3.20e+01 c.67.1.1 107543 1h0kA 364 3.21e+01 b.35.1.2,c.2.1.1 83435,83436 2fo0A 495 3.27e+01 1n9gA 386 3.28e+01 b.35.1.2,c.2.1.1 91720,91721 1nepA 130 3.45e+01 b.1.18.7 80440 1xqaA 113 3.49e+01 1v9yA 167 3.57e+01 d.110.3.2 108454 1t3tA 1303 3.65e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1xqdA 403 3.81e+01 2cxxA 190 3.82e+01 1f24A 402 3.84e+01 1rom a.104.1.1 18953 1f26A 402 3.84e+01 1rom a.104.1.1 18951 1cl6A 402 3.84e+01 1rom a.104.1.1 18960 1cmjA 402 3.85e+01 1rom a.104.1.1 18959 1gejA 403 3.85e+01 1rom a.104.1.1 18954 1ehfA 403 3.86e+01 1rom a.104.1.1 18957 1jfbA 404 3.86e+01 a.104.1.1 66624 1cmnA 402 3.87e+01 1rom a.104.1.1 18958 1ehgA 403 3.88e+01 1rom a.104.1.1 18956 1ulwA 402 3.88e+01 1f25A 402 3.88e+01 1rom a.104.1.1 18952 1jy2O 56 4.17e+01 h.1.8.1 67441 1b6g 310 4.32e+01 1b6g c.69.1.8 34661 1ede 310 4.32e+01 1b6g c.69.1.8 34662 1exrA 148 4.32e+01 1cll a.39.1.5 17299 1clm 148 4.34e+01 1cll a.39.1.5 17301 1oplA 537 4.38e+01 b.34.2.1,d.93.1.1,d.144.1.7 87235,87236,87237 2a5lA 200 4.43e+01 2fulA 177 4.65e+01 1eqfA 280 4.69e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1qnrA 344 4.69e+01 1qnoA c.1.8.3 28834 1ezrA 314 4.72e+01 2masA c.70.1.1 34816 2afdA 88 4.77e+01 1vrkA 148 4.88e+01 1cll k.21.1.1 46451 1g94A 448 5.04e+01 b.71.1.1,c.1.8.1 65169,65170 1aqm 453 5.05e+01 1smd b.71.1.1,c.1.8.1 27717,28704 2b5eA 504 5.21e+01 1pn2A 280 5.34e+01 d.38.1.4,d.38.1.4 94930,94931 1opjA 293 5.48e+01 d.144.1.7 87230 1pn4A 280 5.49e+01 d.38.1.4,d.38.1.4 94940,94941 2fb1A 226 5.49e+01 1zx0A 236 5.53e+01 1uk8A 282 5.55e+01 c.69.1.10 107907 1ao5A 237 5.58e+01 5ptp b.47.1.2 26334 1jd7A 453 5.65e+01 b.71.1.1,c.1.8.1 77104,77105 2d0dA 282 5.66e+01 1y1uA 585 5.69e+01 1s1qA 145 5.75e+01 d.20.1.2 98351 1zd9A 188 5.85e+01 1nrjB 218 5.97e+01 c.37.1.8 86125 2f4jA 287 6.01e+01 1kxhA 448 6.28e+01 b.71.1.1,c.1.8.1 73151,73152 1xad 345 6.31e+01 1cnzA c.77.1.1 35055 2h18A 193 6.48e+01 1nlaA 64 6.50e+01 a.43.1.1 85848 1edsA 31 6.57e+01 1edsA j.35.1.1 46240 1n7hA 381 6.60e+01 c.2.1.2 80250 1pdgA 109 6.63e+01 1pdgA g.17.1.1 44748 1ul7A 102 6.78e+01 d.129.6.1 99540 1qs7A 145 6.82e+01 k.21.1.1 88373 1qtxA 148 6.90e+01 k.21.1.1 88375 1z8yB 89 7.03e+01 2f0rA 159 7.20e+01 2fjlA 150 7.22e+01 1yat 113 7.38e+01 1fkj d.26.1.1 38427 1fjrA 195 7.40e+01 1fjrA b.102.1.1 59855 2atrA 138 7.53e+01 2g1tA 287 7.56e+01 2g2hA 287 7.62e+01 1vi7A 217 7.67e+01 d.14.1.11,d.58.11.2 100740,100741 1hdeA 310 7.72e+01 1b6g c.69.1.8 34675 1oen 540 7.72e+01 1ayl c.91.1.1,c.109.1.1 64750,64751 1w9yA 319 7.79e+01 1v5sA 126 7.86e+01 d.129.6.1 108384 1lv5A 580 7.98e+01 c.55.3.5,e.8.1.1 84719,84720 1rhjB 110 8.01e+01 1opkA 495 8.04e+01 b.34.2.1,d.93.1.1,d.144.1.7 87232,87233,87234 1u4bA 580 8.06e+01 c.55.3.5,e.8.1.1 107664,107665 1nk4A 580 8.08e+01 c.55.3.5,e.8.1.1 91923,91924 2bdpA 580 8.12e+01 1xwl c.55.3.5,e.8.1.1 33709,43002 1ty9A 222 8.12e+01 1irxA 523 8.17e+01 a.97.1.2,c.26.1.1 71378,71379 1riiA 265 8.18e+01 1uvqA 197 8.20e+01 b.1.1.2,d.19.1.1 100062,100063 2f46A 156 8.21e+01 1v0aA 178 8.43e+01 1wtbA 79 8.77e+01 1mknA 59 8.91e+01 1mknA g.5.1.1 44383 1byfA 125 8.95e+01 1byfA d.169.1.1 42419 1yg2A 179 8.97e+01