# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ap1A 327 1.66e-03 1yrvA 169 6.67e-01 1z5bA 469 1.14e+00 1u9aA 160 1.30e+00 1u9aA d.20.1.1 38333 1wg8A 285 1.64e+00 1ufiA 64 1.95e+00 a.30.4.1 99336 1z8uA 102 2.11e+00 2fa8A 105 2.77e+00 1td6A 306 3.19e+00 2grrA 161 3.27e+00 1yirA 408 3.32e+00 1rypA 243 3.59e+00 1pmaA d.153.1.4 41932 1wp5A 323 3.83e+00 1swvA 267 3.87e+00 1gqeA 365 3.90e+00 e.38.1.1 70351 1g0uG 252 3.97e+00 d.153.1.4 41952 1rqlA 267 4.18e+00 c.108.1.3 97750 1ujwB 135 4.63e+00 h.4.9.1 99472 1f20A 435 4.68e+00 b.43.4.1,c.25.1.4 64932,64933 2b6hA 192 4.98e+00 1fezA 256 5.33e+00 1fezA c.108.1.3 43343 1wf9A 107 5.38e+00 1w0bA 102 5.63e+00 a.7.11.1 108985 1u08A 386 5.88e+00 c.67.1.1 107543 1jl5A 454 6.23e+00 c.10.2.6 66830 1jy2O 56 6.32e+00 h.1.8.1 67441 1r0pA 312 6.64e+00 d.144.1.7 96734 1cuk 203 6.73e+00 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1jsdA 319 7.09e+00 b.19.1.2 63258 1a8y 367 7.42e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1gg3A 279 7.52e+00 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 2ahqA 76 7.77e+00 1ofgA 381 8.31e+00 1ofgA c.2.1.3,d.81.1.5 30064,39979 1b7yA 350 8.45e+00 1pysA d.104.1.1 40776 1nrjA 158 8.76e+00 d.110.4.4 86124 1h6dA 433 8.91e+00 c.2.1.3,d.81.1.5 65656,65657 1qsdA 106 9.00e+00 1qsdA a.7.5.1 16335 1zoyC 140 9.14e+00 1gu7A 364 9.16e+00 b.35.1.2,c.2.1.1 83321,83322 1nepA 130 9.17e+00 b.1.18.7 80440 1xttA 216 9.17e+00 1fseA 74 9.18e+00 1fseA a.4.6.2 60000 1kvkA 395 9.71e+00 d.14.1.5,d.58.26.3 73060,73061 2bjkA 516 1.02e+01 2g0uA 92 1.02e+01 1uzbA 516 1.08e+01 c.82.1.1 100220 1jggA 60 1.08e+01 2hddA a.4.1.1 62950 1fzqA 181 1.09e+01 1hurA c.37.1.8 32060 1ajsA 412 1.12e+01 1ajsA c.67.1.1 34276 1xqaA 113 1.14e+01 1r1qA 100 1.18e+01 d.93.1.1 104763 2db9A 149 1.22e+01 1h2kA 349 1.26e+01 b.82.2.6 76572 2ajrA 331 1.27e+01 1wzvA 155 1.29e+01 1q02A 52 1.35e+01 a.5.2.1 95490 1u7kA 131 1.43e+01 1ztpA 251 1.47e+01 2aobA 99 1.49e+01 1r8sA 164 1.49e+01 c.37.1.8 97247 1eqfA 280 1.51e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1bjwA 382 1.51e+01 1bjwA c.67.1.1 34349 1g03A 134 1.52e+01 1qrjB a.73.1.1 60162 1wgxA 73 1.53e+01 1vd2A 89 1.53e+01 d.15.2.2 108517 1q1vA 70 1.57e+01 a.159.4.1 104479 1kveB 77 1.73e+01 1kveB 1zwwA 256 1.74e+01 1ev0A 58 1.74e+01 1ev0A d.71.1.1 39594 1q2hA 69 1.74e+01 a.34.4.1 104498 1a17 166 1.75e+01 1a17 a.118.8.1 19206 1b5pA 385 1.75e+01 c.67.1.1 90403 1sziA 247 1.76e+01 a.24.23.1 106159 1qnrA 344 1.83e+01 1qnoA c.1.8.3 28834 1w4tA 299 1.83e+01 1o5iA 249 2.08e+01 c.2.1.2 92499 1lkkA 105 2.10e+01 1lckA d.93.1.1 40412 1uj8A 77 2.15e+01 1l9hA 349 2.28e+01 f.13.1.2 73720 1zvkA 358 2.29e+01 1tllA 688 2.31e+01 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 2a5lA 200 2.31e+01 2f6uA 234 2.31e+01 1gvfA 286 2.38e+01 c.1.10.2 70599 1ydhA 216 2.40e+01 1exrA 148 2.42e+01 1cll a.39.1.5 17299 1d9cA 121 2.43e+01 1d9cA a.26.1.3 16901 1sg7A 96 2.44e+01 2h88C 140 2.44e+01 1a8d 452 2.46e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1fjlA 81 2.56e+01 2hddA a.4.1.1 16017 1lvfA 110 2.59e+01 a.47.2.1 74280 1ymmA 191 2.60e+01 1ggzA 148 2.64e+01 a.39.1.5 70176 1u9jA 358 2.72e+01 2aegA 268 2.74e+01 1mu5A 471 2.85e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1v2zA 111 2.90e+01 a.186.1.1 108300 1g8iA 190 2.92e+01 1rec a.39.1.5 60363 2hddA 61 2.94e+01 2hddA a.4.1.1 15971 1q18A 332 2.95e+01 c.55.1.7,c.55.1.7 104470,104471 1z21A 112 2.96e+01 2bpsA 81 2.98e+01 1eluA 390 3.03e+01 1elqA c.67.1.3 34434 1elqA 390 3.10e+01 1elqA c.67.1.3 34436 1xkrA 206 3.11e+01 1yx1A 264 3.19e+01 1a92A 50 3.22e+01 1a92A h.4.6.1 45791 2fi9A 128 3.37e+01 1o4sA 389 3.60e+01 c.67.1.1 86620 1pysA 350 3.65e+01 1pysA d.104.1.1 40775 1j33A 335 3.66e+01 c.39.1.1 77069 1m3qA 317 3.66e+01 a.96.1.3,d.129.1.2 91184,91185 1gx3A 284 3.70e+01 d.3.1.5 70678 2fbwC 141 3.71e+01 1o6zA 303 3.86e+01 c.2.1.5,d.162.1.1 81107,81108 1kinA 366 3.89e+01 2ffeA 311 3.98e+01 1gt91 357 3.98e+01 2fupA 168 4.05e+01 1t1gA 364 4.06e+01 c.41.1.2 106246 1g5gA 481 4.06e+01 f.12.1.1,h.3.2.1 65155,65156 2f3yA 148 4.08e+01 1sur 215 4.10e+01 1sur c.26.2.2 31620 2dfkA 402 4.10e+01 3nul 130 4.18e+01 3nul d.110.1.1 40891 1adn 92 4.19e+01 1adn g.48.1.1 45348 1cpcA 162 4.19e+01 1cpcA a.1.1.3 15643 1ebmA 317 4.26e+01 1ebmA a.96.1.3,d.129.1.2 18751,41300 1gypA 358 4.46e+01 1dssG c.2.1.3,d.81.1.1 30004,39919 1d9uA 154 4.47e+01 1am7A d.2.1.4 59111 1wx1A 335 4.49e+01 1q4gA 553 4.52e+01 a.93.1.2,g.3.11.1 95789,95790 1sjiA 350 4.53e+01 1tn4 159 4.56e+01 1ncx a.39.1.5 17248 2bllA 345 4.58e+01 2a3qA 170 4.59e+01 1jj2L 194 4.68e+01 1ffkI d.12.1.2 63097 1q79A 514 4.71e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1pwxA 254 4.78e+01 c.2.1.2 95262 1sk4A 163 4.83e+01 d.118.1.1 105664 1zmtA 254 4.83e+01 1qmqA 414 5.02e+01 1phd a.104.1.1 18907 7odcA 424 5.02e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1yg2A 179 5.12e+01 1k3tA 359 5.14e+01 c.2.1.3,d.81.1.1 72022,72023 1zd9A 188 5.17e+01 1wovA 250 5.18e+01 1bs0A 384 5.21e+01 1bs0A c.67.1.4 34490 1pnsC 206 5.25e+01 i.1.1.1 88170 1sflA 238 5.26e+01 1fjgC 239 5.27e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1na6A 404 5.32e+01 b.142.1.1,c.52.1.22 91748,91749 1z08A 170 5.32e+01 1qj4A 257 5.33e+01 1qj4A c.69.1.20 34796 1wmhA 89 5.37e+01 1jpzA 473 5.41e+01 a.104.1.1 67069 1f5aA 513 5.44e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1vjeA 166 5.50e+01 d.185.1.2 100807 1innA 166 5.51e+01 1j98A d.185.1.2 62608 1s62A 106 5.59e+01 1yasA 257 5.60e+01 1qj4A c.69.1.20 34801 2cglA 489 5.61e+01 1k1fA 72 5.61e+01 a.147.1.1 68007 2b8iA 77 5.66e+01 2ddrA 306 5.67e+01 2c43A 323 5.72e+01 1onwA 390 5.79e+01 b.92.1.7,c.1.9.13 87172,87173 1qgtA 149 5.80e+01 1qgtA a.62.1.1 18135 1rgxA 114 5.92e+01 g.77.1.1 104932 1g4yR 148 5.93e+01 1cll a.39.1.5 60252 1uzcA 71 6.06e+01 a.159.2.1 100222 1rlmB 271 6.10e+01 1wekA 217 6.14e+01 2ck3A 510 6.14e+01 1xhlA 297 6.16e+01 c.2.1.2 109591 2h1nA 567 6.24e+01 1mdoA 393 6.26e+01 c.67.1.4 79013 1stzA 338 6.30e+01 a.4.5.51,d.110.2.3 106009,106010 1gdeA 389 6.30e+01 c.67.1.1 60456 1o5xA 248 6.32e+01 c.1.1.1 92528 2c0rA 362 6.36e+01 2gkpA 167 6.44e+01 1omrA 201 6.47e+01 a.39.1.5 93349 2b20A 403 6.53e+01 1sxrA 183 6.53e+01 d.118.1.1 106101 1bbpA 173 6.57e+01 1bbpA b.60.1.1 27147 1nqzA 194 6.62e+01 d.113.1.1 86077 1yh6A 179 6.67e+01 1sq5A 308 6.72e+01 c.37.1.6 105882 1iyjB 817 6.79e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 2gupA 292 6.80e+01 1rec 201 6.84e+01 1rec a.39.1.5 17326 1m4zA 238 6.84e+01 b.34.12.1 78630 1s1qA 145 6.86e+01 d.20.1.2 98351 1u19A 349 6.86e+01 1e79A 510 6.92e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18269,26434,32314 1p8xA 344 7.01e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 2g7jA 124 7.09e+01 1s72M 194 7.22e+01 d.12.1.2 105332 1w3uA 362 7.22e+01 1vqoM 195 7.25e+01 1hynP 379 7.26e+01 1hynP d.112.1.2 61408 1lyxA 248 7.37e+01 c.1.1.1 78304 2fh1A 344 7.37e+01 1zfpE 98 7.37e+01 1griA d.93.1.1 40465 1jyrA 96 7.38e+01 d.93.1.1 71969 8rucI 123 7.42e+01 1rboC d.73.1.1 39629 1rm4A 337 7.47e+01 c.2.1.3,d.81.1.1 105000,105001 1div 149 7.47e+01 1div d.99.1.1,d.100.1.1 40692,40693 1z7bA 358 7.50e+01 1sz2A 332 7.52e+01 1uwcA 261 7.56e+01 c.69.1.17 100101 1h8eA 510 7.56e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1dar 691 7.67e+01 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1 25707,32142,37547,39300 1tiiD 99 7.70e+01 1tiiD b.40.2.1 24965 1go4E 100 7.72e+01 h.1.22.1 70296 1vkkA 154 7.77e+01 d.109.1.2 108669 1iapA 211 7.84e+01 a.91.1.1 62119 1r5eA 115 7.94e+01 1y1uA 585 7.98e+01 2bydA 323 8.10e+01 1jfmA 174 8.12e+01 d.19.1.1 66640 1o5kA 306 8.16e+01 c.1.10.1 92504 1ayaA 101 8.18e+01 1qadA d.93.1.1 40460 1bu8A 452 8.29e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 1am7A 158 8.38e+01 1am7A d.2.1.4 36981 1zg2A 107 8.42e+01 2gokA 429 8.49e+01 1yz4A 160 8.57e+01 1p5fA 189 8.60e+01 c.23.16.2 94142 1qqgA 264 8.63e+01 1qqgA b.55.1.2,b.55.1.2 26987,26988 1shuX 182 8.64e+01 c.62.1.1 98882 1uliA 460 8.70e+01 b.33.1.2,d.129.3.3 107921,107922 1gd8A 118 8.72e+01 d.188.1.1 60445 1w6sB 74 8.74e+01 1t7sA 137 8.85e+01 a.7.7.1 106636 1oj4A 283 8.88e+01 d.14.1.5,d.58.26.5 93083,93084 1mkiA 330 8.89e+01 e.3.1.2 84994 1rloA 271 8.91e+01 1otgA 125 8.97e+01 1otgA d.80.1.2 39831