CreatePredAlphaCost pred_alpha2k alpha11 T0350.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0350.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0350.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \ phobic_fit 2 \ sidechain 5 \ n_ca_c 5 bad_peptide 10 \ bystroff 5 \ soft_clashes 20 backbone_clashes 2 \ break 50 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ constraints 10 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ missing_atoms 1 \ maybe_metal 0.5 \ maybe_ssbond 1 include rr.constraints # from T0350.dssp-ehl2.constraints HelixConstraint Q23 D27 0.6352 HelixConstraint Y37 E52 0.7187 StrandConstraint L58 L62 0.7409 StrandConstraint Y69 E75 0.7533 StrandConstraint V81 R83 0.6851 HelixConstraint K88 L101 10 HelixConstraint E107 L110 10 # from try4-opt2.sheets SheetConstraint (T0350)H57 (T0350)H63 (T0350)I74 (T0350)E68 hbond (T0350)K59 3 SheetConstraint (T0350)N67 (T0350)E75 (T0350)K88 (T0350)E80 hbond (T0350)V71 3