# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3proC 166 1.42e+00 3proC d.52.1.1,d.52.1.1 38812,38813 1n91A 108 1.55e+00 d.206.1.1 80326 1obdA 306 1.82e+00 d.143.1.1 86767 2cnqA 306 1.90e+00 d.143.1.1 130646 2gu2A 312 1.98e+00 2gu3A 136 2.12e+00 1qcsA 211 2.22e+00 1qcsA b.52.2.3,d.31.1.1 26927,38461 1t6sA 162 2.36e+00 a.4.5.60,a.4.5.60 112271,112272 1p5dX 463 2.83e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1zbfA 142 3.41e+00 c.55.3.1 124850 1ylxA 103 3.47e+00 d.82.5.1 123677 1ohtA 215 4.37e+00 d.118.1.1 87036 2nr1 27 4.85e+00 1rypK 198 4.95e+00 d.153.1.4 41879 1ykdA 398 5.41e+00 1tr0A 108 7.28e+00 d.58.4.4 107261 1nrlA 316 7.44e+00 a.123.1.1 92091 1s1hC 192 7.62e+00 i.1.1.1 105156 2cunA 410 7.92e+00 1t95A 240 7.96e+00 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1c44A 123 8.33e+00 1qndA d.106.1.1 40795 1s5jA 847 8.57e+00 c.55.3.5,e.8.1.1 112040,112041 2aq4A 434 8.75e+00 1w53A 84 8.95e+00 a.186.1.2 109175 1kveB 77 9.12e+00 1kveB 1jnyA 435 9.25e+00 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1ospO 257 9.60e+00 1ospO b.76.1.1 27971 1j6qA 136 1.02e+01 b.40.9.1 77091 1xr4A 509 1.08e+01 c.124.1.2,c.124.1.2 115860,115861 1o8xA 146 1.08e+01 c.47.1.10 86681 830cA 168 1.09e+01 1ck7A d.92.1.11 40400 1v7cA 351 1.09e+01 c.79.1.1 100446 1qwrA 319 1.14e+01 b.82.1.3 96491 1dq3A 454 1.17e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1s6cA 183 1.20e+01 a.39.1.5 98594 1mixA 206 1.23e+01 a.11.2.1,b.55.1.5 79166,79167 1lm4A 194 1.26e+01 d.167.1.1 84626 1wr2A 238 1.38e+01 1muwA 386 1.39e+01 c.1.15.3 79495 1bywA 110 1.41e+01 1bywA d.110.3.6 40912 1bif 469 1.47e+01 1bif 1914 232 1.49e+01 1914 1yduA 170 1.51e+01 b.162.1.1 123003 2c6cA 707 1.53e+01 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 1ifqA 138 1.62e+01 1ifqA d.110.4.1 62350 2bwqA 129 1.69e+01 b.7.1.2 129380 1fcdA 401 1.70e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1rypD 241 1.71e+01 1rypD d.153.1.4 41935 2a2lA 145 1.72e+01 d.110.9.1 126035 1sh8A 154 1.72e+01 d.38.1.5 105549 1trb 320 1.72e+01 1trb 1yewA 382 1.73e+01 1j3bA 529 1.79e+01 c.91.1.1,c.109.1.1 77071,77072 2bo9A 308 1.79e+01 c.56.5.1 128897 1x7yA 400 1.84e+01 c.36.1.11 114944 2bfdA 400 1.84e+01 2ajrA 331 1.87e+01 c.72.1.1 126892 1squA 155 1.89e+01 d.252.1.1 98971 1mngA 203 1.93e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1nlfA 279 1.96e+01 c.37.1.11 85850 1ud0A 113 1.98e+01 a.8.4.1 99198 1h72C 296 1.99e+01 d.14.1.5,d.58.26.1 60712,60713 1r8gA 372 2.00e+01 d.128.1.3 104845 1jovA 270 2.01e+01 b.30.5.7 84192 1vk8A 106 2.02e+01 d.58.48.1 108636 1u4bA 580 2.04e+01 c.55.3.5,e.8.1.1 107664,107665 2c7hA 86 2.05e+01 1iu8A 206 2.05e+01 c.56.4.1 71436 1c1lA 136 2.05e+01 1c1lA b.29.1.3 24219 1avwB 171 2.06e+01 1wba b.42.4.1 25599 1iujA 106 2.08e+01 d.58.4.5 90701 1fit 147 2.08e+01 1fit 1snzA 344 2.15e+01 b.30.5.4 98930 2g3aA 152 2.16e+01 d.108.1.1 134557 1vh5A 148 2.18e+01 d.38.1.5 100642 1z2nX 324 2.25e+01 2afbA 351 2.26e+01 c.72.1.1 126674 1jvbA 347 2.26e+01 b.35.1.2,c.2.1.1 77181,77182 1yzsA 121 2.29e+01 2fwuA 157 2.29e+01 b.1.27.1 134262 1aqcA 172 2.30e+01 1x11A b.55.1.2 26983 1nwzA 125 2.31e+01 d.110.3.1 86370 1ob8A 135 2.36e+01 c.52.1.18 111627 1yb2A 275 2.43e+01 c.66.1.13 122868 2b9hA 353 2.49e+01 1go4A 205 2.49e+01 d.135.1.1 70292 1u04A 771 2.50e+01 b.34.14.1,c.55.3.10 107539,107540 1u5uA 374 2.57e+01 e.5.1.2 113052 1kwaA 88 2.61e+01 1kwaA b.36.1.1 24772 1zjcA 418 2.73e+01 e.60.1.1 125147 1vggA 161 2.75e+01 d.256.1.1 113647 2es7A 142 2.76e+01 c.47.1.20 132314 1wq3A 322 2.88e+01 1mjhA 162 2.93e+01 1mjhA c.26.2.4 31639 2cfuA 658 2.95e+01 1inlA 296 3.01e+01 c.66.1.17 66220 2fclA 169 3.06e+01 d.218.1.11 133273 1ywqA 200 3.07e+01 d.90.1.1 124162 1oz9A 150 3.08e+01 d.92.1.15 93808 1r2jA 366 3.08e+01 a.29.3.1,e.6.1.1 96869,96870 1q7sA 117 3.11e+01 c.131.1.1 96055 1vjvA 415 3.13e+01 d.3.1.9 108632 1mzuA 129 3.17e+01 d.110.3.1 79714 1ash 150 3.23e+01 1ash 1h5wA 309 3.31e+01 e.27.1.1 65635 1xovA 326 3.39e+01 b.34.11.4,c.56.5.6 122206,122207 1a0p 290 3.43e+01 1a0p 1zceA 155 3.45e+01 b.122.1.8 124907 1d4oA 184 3.49e+01 1d4oA c.31.1.4 31748 1yvhA 329 3.63e+01 a.39.1.7,a.48.1.1,d.93.1.1 124096,124097,124098 1r7mA 235 3.66e+01 d.95.2.1,d.95.2.1 111713,111714 1o26A 232 3.68e+01 d.207.1.1 86566 2essA 248 3.71e+01 d.38.1.8,d.38.1.8 132346,132347 2b9wA 424 3.74e+01 1vclA 432 3.78e+01 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1q4rA 112 3.80e+01 d.58.4.4 95823 1e0cA 271 3.82e+01 1e0cA c.46.1.2,c.46.1.2 32717,32718 1ukkA 142 3.89e+01 d.227.1.1 99491 1n9lA 109 3.90e+01 d.110.3.6 85468 1fc6A 388 3.92e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1dkuA 317 3.92e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1u9yA 284 3.95e+01 c.61.1.2,c.61.1.2 119655,119656 1gwyA 175 3.99e+01 b.97.1.1 83356 1z5bA 469 4.00e+01 a.156.1.3,d.14.1.3,d.122.1.2 124464,124465,124466 2g0wA 296 4.05e+01 c.1.15.4 134503 1xv2A 237 4.09e+01 d.290.1.1 116076 1hbkA 94 4.20e+01 1aca a.11.1.1 60887 1jidA 128 4.23e+01 d.201.1.1 66735 1z9vA 121 4.24e+01 2gjgA 248 4.28e+01 1p4fA 293 4.29e+01 d.144.1.7 104063 1o04A 500 4.35e+01 c.82.1.1 86508 1yarA 233 4.36e+01 d.153.1.4 122837 1crzA 403 4.37e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1zaiA 363 4.40e+01 c.1.10.1 124828 1wvqA 167 4.47e+01 1vpkA 378 4.48e+01 d.131.1.1,d.131.1.1,d.131.1.1 113963,113964,113965 2an3A 289 4.48e+01 c.66.1.15 127027 1in0A 163 4.54e+01 d.58.49.1,d.58.49.1 83694,83695 2fhfA 1083 4.56e+01 1nscA 390 4.59e+01 2qwc b.68.1.1 27591 2igd 61 4.78e+01 2igd 1nwwA 149 4.78e+01 d.17.4.8 86306 1mzbA 136 4.88e+01 a.4.5.42 91497 1rwiA 270 4.90e+01 b.68.9.1 97987 1zchA 255 4.91e+01 d.90.1.1 124908 1ebfA 358 4.97e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1zwyA 185 5.01e+01 c.51.4.3 125753 1xw3A 110 5.04e+01 1pvgA 418 5.14e+01 d.14.1.3,d.122.1.2 95161,95162 1e4fT 419 5.30e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1pguA 615 5.35e+01 b.69.4.1,b.69.4.1 88069,88070 1uy4A 145 5.40e+01 b.18.1.10 108131 1vhoA 346 5.41e+01 b.49.3.1,c.56.5.4 100694,100695 1vkkA 154 5.43e+01 d.109.1.2 108669 1xn5A 146 5.43e+01 d.129.3.5 115574 1a5t 334 5.49e+01 1a5t 2g7uA 257 5.49e+01 2f9lA 199 5.52e+01 c.37.1.8 133166 1vl2A 421 5.55e+01 c.26.2.1,d.210.1.1 108708,108709 1u96A 69 5.55e+01 a.17.1.2 113232 1iktA 120 5.56e+01 d.106.1.1 66188 1z5sD 83 5.56e+01 1gxrA 337 5.58e+01 b.69.4.1 70722 1x7vA 99 5.63e+01 d.58.4.11 109501 1dqtA 117 5.67e+01 1ah1 b.1.1.1 20653 1cs0A 1073 5.68e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1o7fA 469 5.68e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 5nul 138 5.73e+01 5nul 1x3mA 415 5.79e+01 c.55.1.2,c.55.1.2 121664,121665 1i27A 73 5.80e+01 1i27A a.4.5.30 61555 2gqrA 237 5.82e+01 5csmA 256 5.82e+01 5csmA a.130.1.2 19494 1yarH 217 5.86e+01 d.153.1.4 122844 1txvA 452 5.88e+01 b.69.8.1 112783 1k0hA 117 5.89e+01 b.106.1.2 71975 1ogoX 574 5.89e+01 b.133.1.1,b.80.1.10 92925,92926 1ykhB 132 5.95e+01 a.252.1.1 123519 1e2kA 331 5.98e+01 1qhiA c.37.1.1 31854 1yvrA 538 6.06e+01 a.118.25.1,c.62.1.5 124116,124117 1tqzA 133 6.09e+01 b.55.1.11 119327 1sc6A 404 6.17e+01 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1p0yA 444 6.24e+01 a.166.1.1,b.85.7.3 87654,87655 1ceo 343 6.35e+01 1ceo 1em2A 229 6.49e+01 1em2A d.129.3.2 41321 1ugjA 141 6.56e+01 b.41.1.3 107826 1iq5B 27 6.62e+01 1mi3A 322 6.63e+01 c.1.7.1 91274 1odmA 331 6.69e+01 b.82.2.1 86875 1y8tA 324 6.72e+01 b.36.1.4,b.47.1.1 122763,122764 1z6bA 154 6.76e+01 d.38.1.6 124510 1c8cA 64 6.85e+01 1azpA b.34.13.1 59084 1ehxA 94 6.91e+01 1ehxA b.1.18.13 21950 1vg0A 650 6.92e+01 c.3.1.3,d.16.1.6 108596,108597 1utcA 363 6.93e+01 a.118.1.4,b.69.6.1 99914,99915 2gk9A 426 6.93e+01 1l0qA 391 6.98e+01 b.1.3.1,b.69.2.3 77644,77645 1a1x 108 7.00e+01 1a1x 1bhe 376 7.03e+01 1bhe 1zatA 250 7.05e+01 b.160.1.1,d.335.1.1 124845,124846 1u84A 90 7.07e+01 a.230.1.1 113114 1gmiA 136 7.09e+01 b.7.1.1 65309 1jc9A 269 7.09e+01 d.171.1.1 66490 1go3E 187 7.09e+01 b.40.4.5,d.230.1.1 83054,83055 1sviA 195 7.22e+01 c.37.1.8 106048 2fb0A 94 7.24e+01 2cyjA 118 7.27e+01 c.103.1.1 131026 1gw5S 142 7.32e+01 d.110.4.2 70633 1fp1D 372 7.42e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1iybA 208 7.46e+01 d.124.1.1 90720 1x47A 98 7.56e+01 d.50.1.1 121680 2erbA 125 7.57e+01 1iyhA 198 7.58e+01 a.45.1.1,c.47.1.5 83790,83791 1oxxK 353 7.74e+01 b.40.6.3,c.37.1.12 93715,93716 1kutA 230 7.78e+01 d.143.1.1 73017 1wy0A 342 7.79e+01 1ym5A 300 7.84e+01 1pueE 89 7.91e+01 1awcA a.4.5.21 16165 2db9A 149 7.93e+01 2bkkA 264 7.95e+01 1dosA 358 7.95e+01 1dosA c.1.10.2 29175 1zxxA 319 7.97e+01 1iruK 201 8.05e+01 d.153.1.4 71362 1uzxA 169 8.08e+01 d.20.1.2 100238 2bvfA 459 8.09e+01 1nqkA 381 8.10e+01 c.1.16.4 92050 2gv8A 447 8.11e+01 c.3.1.5,c.3.1.5 135759,135760 1zh5A 195 8.12e+01 a.4.5.46,d.58.7.1 125073,125074 1s5aA 150 8.26e+01 d.17.4.10 98525 1dd9A 338 8.29e+01 1dd9A e.13.1.1 43254 1udxA 416 8.41e+01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1ykuA 136 8.46e+01 1ucdA 190 8.48e+01 d.124.1.1 107767 1gnlA 544 8.50e+01 e.26.1.1 70287 1b06A 210 8.50e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 2bgkA 278 8.54e+01 c.2.1.2 128480 1gd7A 109 8.55e+01 b.40.4.4 60441 1gzcA 239 8.64e+01 b.29.1.1 70803 1f1xA 322 8.65e+01 d.32.1.3,d.32.1.3 83208,83209 1v3wA 173 8.69e+01 b.81.1.5 100291 1x38A 602 8.74e+01 c.1.8.7,c.23.11.1 121655,121656 1sjiA 350 8.76e+01 1jksA 294 8.82e+01 d.144.1.7 71710 2a3qA 170 8.82e+01 a.204.1.2 126092 1scfA 273 8.85e+01 1exzA a.26.1.2 16873 1f1uA 323 8.92e+01 d.32.1.3,d.32.1.3 83200,83201 1oo0A 147 8.93e+01 d.232.1.1 87182 2gnqA 336 8.96e+01 1j8uA 325 8.98e+01 d.178.1.1 71611