# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1z7lA 276 9.64e-02 1aqcA 172 1.29e+00 1x11A b.55.1.2 26983 1v5mA 136 1.42e+00 b.55.1.1 108379 1mjhA 162 1.97e+00 1mjhA c.26.2.4 31639 1ylxA 103 2.10e+00 d.82.5.1 123677 1y9wA 140 2.23e+00 d.108.1.1 122783 1kmiZ 214 2.69e+00 h.4.11.1 72752 1dq3A 454 2.75e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1ufzA 83 3.01e+00 a.5.9.1 107821 1oa8A 133 3.17e+00 b.145.1.1 92698 1qqp3 220 3.31e+00 1qqp3 1n6zA 105 3.36e+00 d.263.1.1 85369 1ngmB 72 3.81e+00 j.104.1.1 85687 1t95A 240 4.40e+00 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1vlaA 150 5.67e+00 d.227.1.2 108735 1z5sD 83 7.21e+00 1wpbA 172 7.36e+00 a.233.1.1 114783 1c1lA 136 7.68e+00 1c1lA b.29.1.3 24219 1pvgA 418 7.91e+00 d.14.1.3,d.122.1.2 95161,95162 1sseB 86 8.53e+00 2f57A 317 9.50e+00 1qwlA 505 1.02e+01 e.5.1.1 96483 1jidA 128 1.02e+01 d.201.1.1 66735 1xyiA 66 1.11e+01 1j6qA 136 1.19e+01 b.40.9.1 77091 1n91A 108 1.21e+01 d.206.1.1 80326 5csmA 256 1.29e+01 5csmA a.130.1.2 19494 1sc3B 88 1.36e+01 1tr0A 108 1.40e+01 d.58.4.4 107261 1t6sA 162 1.47e+01 a.4.5.60,a.4.5.60 112271,112272 1vk8A 106 1.48e+01 d.58.48.1 108636 1ospO 257 1.49e+01 1ospO b.76.1.1 27971 1vr4A 103 1.54e+01 d.230.5.1 120432 2bj7A 138 1.60e+01 a.43.1.3,d.58.18.4 128608,128609 1i27A 73 1.65e+01 1i27A a.4.5.30 61555 1w6sB 74 1.74e+01 a.137.2.1 114285 2bwfA 77 1.75e+01 d.15.1.1 129363 2c4wA 176 1.77e+01 2fk4A 75 1.77e+01 1jlvA 209 1.82e+01 a.45.1.1,c.47.1.5 71729,71730 1tjlA 151 1.84e+01 a.2.14.1,g.39.1.13 107027,107028 1x4rA 99 1.87e+01 1j1jA 240 1.89e+01 a.118.16.1 90762 1uqrA 154 1.96e+01 c.23.13.1 99779 2azeA 155 1.98e+01 e.63.1.1 127605 1ltqA 301 2.08e+01 c.108.1.9,c.37.1.1 78208,78209 1u96A 69 2.12e+01 a.17.1.2 113232 2erfA 209 2.14e+01 b.29.1.4 132287 1j34C 46 2.22e+01 g.32.1.1 84050 1vr6A 350 2.31e+01 c.1.10.4 120439 1o08A 221 2.31e+01 c.108.1.6 86525 1go3F 107 2.34e+01 a.60.8.2 65407 1k2xA 177 2.34e+01 d.153.1.5 90929 1dd9A 338 2.37e+01 1dd9A e.13.1.1 43254 1ls1A 295 2.48e+01 a.24.13.1,c.37.1.10 78170,78171 1zejA 293 2.53e+01 2gibA 103 2.63e+01 d.254.1.2 135225 1tqzA 133 2.72e+01 b.55.1.11 119327 2erbA 125 2.77e+01 1jnyA 435 2.79e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1qu1A 155 2.82e+01 1qu1A h.3.1.1 45670 1vqoN 187 2.88e+01 c.55.4.1 120375 1wt6A 81 2.90e+01 8rucI 123 2.93e+01 1rboC d.73.1.1 39629 1yzsA 121 3.15e+01 1wh5A 80 3.17e+01 a.4.1.1 114633 1jovA 270 3.24e+01 b.30.5.7 84192 1o58A 303 3.27e+01 c.79.1.1 92491 1sw6A 327 3.38e+01 1sw6A d.211.1.1 19176 3grs 478 3.49e+01 3grs 1vqoQ 96 3.55e+01 b.34.5.1 120378 1xw3A 110 3.60e+01 1s7zA 117 3.89e+01 a.159.3.1 98715 1z21A 112 4.04e+01 a.243.1.2 124367 1jmuB 666 4.14e+01 1ly1A 181 4.14e+01 c.37.1.1 74334 1at0 145 4.30e+01 1at0 2cx1A 187 4.34e+01 b.122.1.1,d.17.6.4 130967,130968 2b9wA 424 4.37e+01 2fmpA 335 4.37e+01 a.60.6.1,a.60.12.1,d.218.1.2 133786,133787,133788 1c8cA 64 4.40e+01 1azpA b.34.13.1 59084 1fecA 490 4.41e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1h3gA 601 4.44e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1k5dB 201 4.63e+01 b.55.1.3 68169 1zvaA 77 4.70e+01 h.3.3.1 125701 1fjgT 106 4.72e+01 1fjfT a.7.6.1 16338 2aeuA 374 4.75e+01 c.67.1.8 126646 1bebA 162 4.79e+01 1bebA b.60.1.1 27115 1nycA 111 4.89e+01 b.61.2.2 92336 2cy5A 140 4.92e+01 b.55.1.2 131018 1w4tA 299 5.02e+01 d.3.1.5 120639 1i31A 314 5.07e+01 1bw8A b.2.7.1 22481 1x3aA 100 5.08e+01 a.240.1.1 121659 1fxd 58 5.14e+01 1fxd 1mbyA 88 5.35e+01 d.223.1.1 78931 2d9kA 75 5.73e+01 1j1iA 296 5.87e+01 c.69.1.10 83977 1q77A 138 5.96e+01 c.26.2.4 96023 1nr4A 71 5.98e+01 d.9.1.1 92077 5eau 548 6.01e+01 5eat 2ghjA 118 6.02e+01 1lc5A 364 6.10e+01 c.67.1.1 73827 1ohtA 215 6.22e+01 d.118.1.1 87036 1umqA 81 6.26e+01 a.4.1.12 99625 1zghA 260 6.31e+01 b.46.1.1,c.65.1.1 125028,125029 1l4uA 176 6.33e+01 c.37.1.2 73568 1xg0C 177 6.38e+01 a.1.1.3 115275 1go4A 205 6.46e+01 d.135.1.1 70292 2trcP 217 6.55e+01 1b9yC c.47.1.6 33051 1xn5A 146 6.57e+01 d.129.3.5 115574 1ufyA 122 6.58e+01 d.79.1.2 88489 1ln1A 214 6.73e+01 d.129.3.2 74038 2f5hA 37 6.78e+01 1u84A 90 6.84e+01 a.230.1.1 113114 1tyjA 170 6.90e+01 b.2.2.2 119390 1u0jA 267 6.94e+01 c.37.1.20 107546 1agjA 242 6.98e+01 1agjA b.47.1.1 25827 1otgA 125 7.18e+01 1otgA d.80.1.2 39831 2afdA 88 7.19e+01 1nc5A 373 7.19e+01 a.102.1.6 85548 1k61A 60 7.22e+01 a.4.1.1 77270 2igd 61 7.46e+01 2igd 2gw6A 123 7.54e+01 1g8iA 190 7.56e+01 1rec a.39.1.5 60363 1lfwA 470 7.61e+01 c.56.5.4,d.58.19.1 77942,77943 2d93A 134 7.68e+01 1e2wA 251 7.71e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 2b3nA 159 7.86e+01 d.38.1.4 127792 2cobA 70 7.86e+01 a.4.1.15 130673 1pujA 282 7.92e+01 c.37.1.8 88294 2fueA 262 7.98e+01 c.108.1.10 134119 1b7yB 785 7.99e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1 16301,16302,25312,39311,40780,41456 1avsA 90 8.20e+01 1cll a.39.1.5 17226 1xlqA 106 8.23e+01 d.15.4.1 122119 2fbwC 141 8.40e+01 1ng6A 148 8.42e+01 a.182.1.1 85670 1wnyA 186 8.42e+01 1grj 158 8.47e+01 1grj 1mvfD 82 8.50e+01 b.129.1.1 85143 2gb7A 305 8.52e+01 2cq8A 110 8.68e+01 1x0cA 549 8.73e+01 1iq8A 582 8.82e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1ieaB 228 8.88e+01 1iakB b.1.1.2,d.19.1.1 21632,38206 1ufmA 84 8.90e+01 a.4.5.47 107816 2eulA 156 8.93e+01 a.2.1.1,d.26.1.2 132392,132393 1k78A 149 8.94e+01 a.4.1.5,a.4.1.5 68255,68256