# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1z7lA 276 6.29e-01 1v5mA 136 9.45e-01 b.55.1.1 108379 1ngmB 72 9.62e-01 j.104.1.1 85687 1aqcA 172 9.65e-01 1x11A b.55.1.2 26983 1th5A 74 1.22e+00 d.52.8.1 119263 1dq3A 454 1.26e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1oa8A 133 1.81e+00 b.145.1.1 92698 1vlaA 150 2.13e+00 d.227.1.2 108735 1ufzA 83 2.25e+00 a.5.9.1 107821 1ylxA 103 2.67e+00 d.82.5.1 123677 1wpbA 172 2.73e+00 a.233.1.1 114783 1n6zA 105 3.43e+00 d.263.1.1 85369 1t6sA 162 4.36e+00 a.4.5.60,a.4.5.60 112271,112272 1auiA 521 5.44e+00 1auiA d.159.1.3 42085 1sseB 86 5.48e+00 1i27A 73 6.03e+00 1i27A a.4.5.30 61555 1v5xA 203 6.07e+00 c.1.2.4 100377 1ckv 141 6.28e+00 1ckv 1vk8A 106 6.85e+00 d.58.48.1 108636 1kmiZ 214 7.26e+00 h.4.11.1 72752 1qqp3 220 8.34e+00 1qqp3 1mjhA 162 8.42e+00 1mjhA c.26.2.4 31639 1vor1 73 8.74e+00 1p9qC 256 9.62e+00 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1xyiA 66 1.02e+01 1t95A 240 1.11e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1jlvA 209 1.14e+01 a.45.1.1,c.47.1.5 71729,71730 5csmA 256 1.31e+01 5csmA a.130.1.2 19494 1y9wA 140 1.34e+01 d.108.1.1 122783 1go3F 107 1.45e+01 a.60.8.2 65407 2erfA 209 1.49e+01 b.29.1.4 132287 1bbt3 220 1.50e+01 1qqp3 1qu1A 155 1.53e+01 1qu1A h.3.1.1 45670 1bmqB 88 1.68e+01 1pauB 1vr4A 103 1.71e+01 d.230.5.1 120432 1jnyA 435 1.89e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1w6sB 74 1.89e+01 a.137.2.1 114285 1pvgA 418 1.94e+01 d.14.1.3,d.122.1.2 95161,95162 1azpA 66 1.98e+01 1azpA b.34.13.1 37467 1s7zA 117 1.99e+01 a.159.3.1 98715 1k78A 149 2.02e+01 a.4.1.5,a.4.1.5 68255,68256 2c4wA 176 2.09e+01 8rucI 123 2.10e+01 1rboC d.73.1.1 39629 1u96A 69 2.14e+01 a.17.1.2 113232 1np8A 159 2.22e+01 a.39.1.8 92022 1rrpB 134 2.22e+01 1rrpB b.55.1.3 26995 1zs4A 83 2.24e+01 a.35.1.9 125585 1jmuB 666 2.25e+01 1wdgA 94 2.25e+01 h.3.3.1 109248 1jidA 128 2.25e+01 d.201.1.1 66735 2f57A 317 2.26e+01 1xwrA 97 2.35e+01 a.35.1.9 122406 2fk4A 75 2.42e+01 1qwlA 505 2.49e+01 e.5.1.1 96483 1x4rA 99 2.51e+01 1sc3B 88 2.65e+01 1bebA 162 2.68e+01 1bebA b.60.1.1 27115 1z5sD 83 2.69e+01 1j1jA 240 2.73e+01 a.118.16.1 90762 1k2xA 177 2.78e+01 d.153.1.5 90929 1o58A 303 2.79e+01 c.79.1.1 92491 1vg5A 73 2.80e+01 a.5.2.1 113640 1xg9A 260 2.81e+01 1zghA 260 2.81e+01 b.46.1.1,c.65.1.1 125028,125029 1x3aA 100 2.88e+01 a.240.1.1 121659 1wh5A 80 2.91e+01 a.4.1.1 114633 1c8cA 64 2.97e+01 1azpA b.34.13.1 59084 1vqoN 187 3.33e+01 c.55.4.1 120375 6paxA 133 3.34e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 1uby 367 3.34e+01 1uby 1vr6A 350 3.42e+01 c.1.10.4 120439 1o08A 221 3.57e+01 c.108.1.6 86525 1yl34 73 3.58e+01 2bwfA 77 3.60e+01 d.15.1.1 129363 2igd 61 3.65e+01 2igd 1iuhA 198 3.66e+01 d.61.1.2 83711 2rslA 140 3.66e+01 2rslA c.53.1.1 33345 1tzyA 129 3.72e+01 a.22.1.1 107530 1cdcA 99 3.88e+01 1cdcA b.1.1.1 19746 1nycA 111 3.88e+01 b.61.2.2 92336 1jj2M 186 3.93e+01 1ffkK c.55.4.1 63098 1hq3A 129 3.93e+01 1aoiC a.22.1.1 16434 1or7A 194 3.94e+01 a.4.13.2,a.177.1.1 87332,87333 1g4yR 148 3.96e+01 1cll a.39.1.5 60252 1n91A 108 4.05e+01 d.206.1.1 80326 1j34C 46 4.07e+01 g.32.1.1 84050 2b9wA 424 4.09e+01 1ny9A 143 4.24e+01 a.181.1.1 86401 1j6qA 136 4.24e+01 b.40.9.1 77091 1tr0A 108 4.33e+01 d.58.4.4 107261 1k0rA 366 4.35e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 1avsA 90 4.37e+01 1cll a.39.1.5 17226 1keyA 235 4.42e+01 a.118.16.1 72389 1i31A 314 4.57e+01 1bw8A b.2.7.1 22481 1zvaA 77 4.67e+01 h.3.3.1 125701 1s72N 187 4.76e+01 c.55.4.1 105333 1tjlA 151 4.77e+01 a.2.14.1,g.39.1.13 107027,107028 1dd9A 338 4.88e+01 1dd9A e.13.1.1 43254 1uqrA 154 4.89e+01 c.23.13.1 99779 1ly1A 181 4.95e+01 c.37.1.1 74334 1ufmA 84 4.97e+01 a.4.5.47 107816 2cszA 76 5.13e+01 1c1lA 136 5.16e+01 1c1lA b.29.1.3 24219 1uk5A 111 5.16e+01 a.7.7.1 99487 2afdA 88 5.32e+01 1jovA 270 5.45e+01 b.30.5.7 84192 1ltqA 301 5.51e+01 c.108.1.9,c.37.1.1 78208,78209 2gw6A 123 5.54e+01 2atxA 194 5.70e+01 c.37.1.8 127315 1k5dB 201 5.86e+01 b.55.1.3 68169 1ohtA 215 6.11e+01 d.118.1.1 87036 1jl2A 156 6.20e+01 c.55.3.1 66822 2fhi 147 6.22e+01 1fit 1h3gA 601 6.36e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1q77A 138 6.48e+01 c.26.2.4 96023 1l5xA 280 6.53e+01 c.106.1.1 77718 2g38A 99 6.71e+01 a.25.4.1 134549 1ufyA 122 6.72e+01 d.79.1.2 88489 2b7yA 182 6.75e+01 1o70A 324 6.76e+01 b.118.1.1,b.118.1.1 81115,81116 1kveB 77 6.76e+01 1kveB 1u0jA 267 6.78e+01 c.37.1.20 107546 1fjgT 106 6.81e+01 1fjfT a.7.6.1 16338 1fxrA 64 6.94e+01 1fxd d.58.1.4 38993 1xn5A 146 6.94e+01 d.129.3.5 115574 1otgA 125 6.95e+01 1otgA d.80.1.2 39831 1s3eA 520 6.95e+01 c.3.1.2,d.16.1.5 98426,98427 1hwtC 81 6.98e+01 1hwtC g.38.1.1,h.1.3.1 45085,45518 1tqzA 133 7.17e+01 b.55.1.11 119327 2aeuA 374 7.19e+01 c.67.1.8 126646 5eau 548 7.21e+01 5eat 2fflA 756 7.25e+01 1sw6A 327 7.29e+01 1sw6A d.211.1.1 19176 1u84A 90 7.31e+01 a.230.1.1 113114 1ghj 79 7.31e+01 1ghj 1tv9A 335 7.56e+01 a.60.6.1,a.60.12.1,d.218.1.2 112675,112676,112677 1jhfA 202 7.61e+01 a.4.5.2,b.87.1.1 63057,63058 1mmsA 140 7.74e+01 1mmsA a.4.7.1,d.47.1.1 16247,38766 1nc5A 373 7.99e+01 a.102.1.6 85548 2fmpA 335 7.99e+01 a.60.6.1,a.60.12.1,d.218.1.2 133786,133787,133788 1umqA 81 8.08e+01 a.4.1.12 99625 3grs 478 8.10e+01 3grs 2bj7A 138 8.12e+01 a.43.1.3,d.58.18.4 128608,128609 1r5sA 132 8.17e+01 f.50.1.1 111709 2cx1A 187 8.26e+01 b.122.1.1,d.17.6.4 130967,130968 1ospO 257 8.27e+01 1ospO b.76.1.1 27971 1kx5C 128 8.29e+01 a.22.1.1 77595 1iq8A 582 8.46e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 2gibA 103 8.52e+01 d.254.1.2 135225 1e6eB 128 8.53e+01 1ayfA d.15.4.1 59300 2gu3A 136 8.55e+01 1lfb 99 8.58e+01 1lfb 1zejA 293 8.70e+01 1z21A 112 8.73e+01 a.243.1.2 124367 1l4uA 176 8.83e+01 c.37.1.2 73568 1w4tA 299 8.91e+01 d.3.1.5 120639