# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zhvA 134 2.52e-02 1g61A 228 3.81e-02 1g61A d.126.1.1 41126 1dzkA 157 1.40e-01 1obpA b.60.1.1 27096 2g76A 335 2.08e-01 2f06A 144 2.42e-01 1kwmA 402 3.23e-01 c.56.5.1,d.58.3.1 73079,73080 2g0dA 409 5.67e-01 1yqhA 109 6.34e-01 1vjqA 79 8.23e-01 k.43.1.1 100830 1v6sA 390 9.01e-01 c.86.1.1 100424 1wwkA 307 1.22e+00 1yj7A 171 1.26e+00 1umgA 362 1.34e+00 d.280.1.1 107956 1bsg 266 1.43e+00 1btl e.3.1.1 42729 1yqgA 263 2.73e+00 1lngA 87 2.86e+00 d.201.1.1 74045 1pba 81 2.99e+00 1pytA d.58.3.1 39067 1rz4A 226 3.02e+00 a.4.5.53,a.118.1.18 105131,105132 1zvpA 133 3.12e+00 1q1oA 98 3.17e+00 d.15.2.2 95596 1l3iA 192 3.19e+00 c.66.1.22 77676 1fp2A 352 3.25e+00 1fpxA a.4.5.29,c.66.1.12 59941,59942 1mp1A 111 3.69e+00 a.188.1.1 91382 1oo0A 147 4.48e+00 d.232.1.1 87182 1jetA 517 4.60e+00 1jevA c.94.1.1 35718 1fjgP 88 4.65e+00 1emwA d.27.1.1 38444 1wwpA 119 4.69e+00 2cvlA 124 4.89e+00 1ewsA 32 4.99e+00 1ewsA g.9.1.1 59534 1ve1A 304 5.15e+00 1ccwA 137 5.29e+00 1be1 c.23.6.1 31238 1jbeA 128 5.43e+00 3chy c.23.1.1 62845 2gukA 120 5.75e+00 2atzA 180 5.84e+00 1vixA 420 6.13e+00 c.56.5.4,d.58.19.1 100777,100778 1cmcA 104 6.48e+00 1cmbA a.43.1.5 17462 2g03A 194 6.93e+00 1umnA 165 6.94e+00 a.25.1.1 99607 1ctf 74 7.15e+00 1ctf d.45.1.1 38759 1ls1A 295 7.49e+00 a.24.13.1,c.37.1.10 78170,78171 1vmaA 306 7.50e+00 a.24.13.1,c.37.1.10 108887,108888 1myn 44 7.62e+00 1gpt g.3.7.4 44172 2a9sA 171 7.93e+00 1mzhA 225 7.97e+00 c.1.10.1 79698 1tl9A 339 8.16e+00 1v2xA 194 8.32e+00 c.116.1.1 100274 1s9uA 207 8.47e+00 a.184.1.1 105390 1sbxA 106 8.49e+00 a.6.1.4 105414 1sbyA 254 8.93e+00 1x54A 434 8.98e+00 1j3mA 129 9.00e+00 d.129.7.1 103836 1ospO 257 9.04e+00 1ospO b.76.1.1 27971 1kvkA 395 9.16e+00 d.14.1.5,d.58.26.3 73060,73061 1k4nA 192 9.21e+00 d.32.1.5 72059 1mwqA 101 9.45e+00 d.58.4.7 91481 1jysA 242 9.48e+00 c.56.2.1 77216 1vfjA 116 9.61e+00 1qzzA 374 1.00e+01 a.4.5.29,c.66.1.12 96719,96720 2d28C 149 1.02e+01 1gnkA 112 1.05e+01 2pii d.58.5.1 39073 1lvaA 258 1.10e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1tjyA 316 1.13e+01 c.93.1.1 107062 1meoA 209 1.15e+01 c.65.1.1 79035 1wd7A 261 1.18e+01 1dpe 507 1.21e+01 1dpe c.94.1.1 35799 1gh9A 71 1.23e+01 1gh9A g.41.6.1 45266 1oxkB 134 1.27e+01 c.23.1.1 93691 1jd1A 129 1.32e+01 1qu9A d.79.1.1 62890 1xmpA 170 1.37e+01 1j7xA 302 1.40e+01 c.14.1.2 66425 2fe7A 166 1.49e+01 1o4vA 183 1.55e+01 c.23.8.1 86628 1in0A 163 1.56e+01 d.58.49.1,d.58.49.1 83694,83695 2pii 112 1.57e+01 2pii d.58.5.1 39071 1x31C 206 1.60e+01 1z3eB 73 1.61e+01 1wcwA 261 1.63e+01 1yg2A 179 1.66e+01 1b0uA 262 1.67e+01 1b0uA c.37.1.12 32370 1hxvA 113 1.72e+01 d.26.1.1 71089 1ug3A 339 1.74e+01 2f60K 64 1.74e+01 1o4sA 389 1.85e+01 c.67.1.1 86620 2f4nA 273 1.85e+01 1wkrA 340 1.85e+01 b.50.1.2 109395 1nm2A 317 1.86e+01 c.19.1.1,d.58.23.1 80654,80655 1jmsA 381 1.88e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1ks8A 433 1.93e+01 a.102.1.2 77519 1t3tA 1303 1.95e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1ka2A 499 1.95e+01 d.92.1.5 77305 1ijtA 128 2.01e+01 1bfg b.42.1.1 62510 1lf7A 182 2.02e+01 b.60.1.1 73878 1iseA 185 2.06e+01 d.67.3.1 90691 1xcbA 211 2.08e+01 a.4.5.38,c.2.1.12 109552,109553 1r6xA 395 2.15e+01 b.122.1.3,c.26.1.5 97167,97168 1fmjA 351 2.23e+01 c.37.1.5 59879 1bed 181 2.27e+01 1fvkA c.47.1.13 90330 2b82A 211 2.29e+01 1x9zA 188 2.30e+01 1t1vA 93 2.33e+01 c.47.1.14 106278 1u9cA 224 2.34e+01 1u5hA 273 2.37e+01 1rypL 212 2.37e+01 d.153.1.4 41880 1ve4A 206 2.39e+01 1jbwA 428 2.41e+01 c.59.1.2,c.72.2.2 62860,62861 1uv7A 110 2.44e+01 d.67.4.1 100040 1whsA 255 2.46e+01 1ivyA c.69.1.5 34649 1atlA 202 2.50e+01 1atlA d.92.1.9 40322 1sgwA 214 2.50e+01 c.37.1.12 105541 1f7uA 607 2.54e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1o50A 157 2.61e+01 d.37.1.1,d.37.1.1 92478,92479 1rmwA 212 2.61e+01 1zl0A 311 2.64e+01 1h6pA 203 2.65e+01 a.146.1.1 60690 1whzA 70 2.68e+01 1yqzA 438 2.74e+01 1rybA 212 2.75e+01 c.56.3.1 98098 2c60A 111 2.75e+01 1ugmA 125 2.79e+01 d.15.1.3 107827 1lrv 244 2.85e+01 1lrv a.118.1.5 19146 1wdyA 285 2.90e+01 1evlA 401 2.90e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 2bkrA 212 2.91e+01 1v54E 109 3.02e+01 a.118.11.1 100326 1e3dA 266 3.03e+01 2frvA e.19.1.1 59188 1v8fA 276 3.05e+01 c.26.1.4 100503 1k66A 149 3.07e+01 c.23.1.1 90941 1vj1A 363 3.07e+01 b.35.1.2,c.2.1.1 100794,100795 1zv1A 65 3.09e+01 1vhxA 150 3.11e+01 c.55.3.8 100712 1jnyA 435 3.17e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1dk8A 147 3.19e+01 1agrE a.91.1.1 18548 1u11A 182 3.22e+01 c.23.8.1 107576 1o2dA 371 3.25e+01 e.22.1.2 86591 1yzhA 214 3.33e+01 1idrA 136 3.33e+01 1dlyA a.1.1.1 62301 2a8jA 420 3.33e+01 1b65A 375 3.38e+01 1b65A d.154.1.1 42020 1u2zA 433 3.38e+01 c.66.1.31 107626 1dlyA 164 3.40e+01 1dlyA a.1.1.1 14983 1r1qA 100 3.40e+01 d.93.1.1 104763 2dpmA 284 3.43e+01 2dpmA c.66.1.28 34246 1hdoA 206 3.55e+01 1he2A c.2.1.2 60965 2b61A 377 3.62e+01 1isiA 265 3.64e+01 e.4.1.1 71394 1w8iA 156 3.65e+01 1wy5A 317 3.68e+01 1ufzA 83 3.71e+01 a.5.9.1 107821 1iqzA 81 3.74e+01 d.58.1.4 66281 1j93A 353 3.78e+01 c.1.22.1 66454 1cfzA 162 3.78e+01 1cfzA c.56.1.1 33754 1jfuA 186 3.80e+01 c.47.1.10 62940 2b1yA 104 3.81e+01 1wi6A 88 3.81e+01 2fclA 169 3.81e+01 1pjr 724 3.84e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 2bepA 159 3.84e+01 1wyzA 242 3.87e+01 1s69A 124 3.97e+01 a.1.1.1 105305 1p2xA 159 4.12e+01 a.40.1.1 104062 1s7zA 117 4.16e+01 a.159.3.1 98715 1gt1A 159 4.25e+01 b.60.1.1 90515 1vqoB 338 4.27e+01 1v92A 46 4.30e+01 a.5.2.3 100531 1v7rA 186 4.31e+01 c.51.4.1 100482 1avqA 228 4.48e+01 1avqA c.52.1.13 33326 2tct 207 4.49e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1ub9A 100 4.55e+01 a.4.5.28 99159 1bea 127 4.59e+01 1bea a.52.1.2 17826 1d2zB 153 4.61e+01 1d2zB a.77.1.2 18439 2cg4A 152 4.63e+01 1aua 296 4.70e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1ul7A 102 4.70e+01 d.129.6.1 99540 1vr5A 547 4.71e+01 1iujA 106 4.79e+01 d.58.4.5 90701 1ylmA 144 4.81e+01 1ufkA 254 4.82e+01 c.66.1.39 99340 1y81A 138 4.85e+01 1f5qB 252 4.86e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 2crbA 97 4.91e+01 2scpA 174 5.04e+01 2scpA a.39.1.5 17256 1vk9A 151 5.05e+01 c.139.1.1 108640 1chd 203 5.08e+01 1chd c.40.1.1 32478 1ys7A 233 5.14e+01 1oaiA 59 5.16e+01 a.5.2.3 81255 1y6xA 93 5.19e+01 1qd9A 124 5.20e+01 1qu9A d.79.1.1 39758 1yi8A 351 5.21e+01 1wy2A 351 5.34e+01 2grrA 161 5.60e+01 1c3pA 375 5.70e+01 1c3pA c.42.1.2 32606 1x46A 150 5.76e+01 1t95A 240 5.77e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1u7bA 261 5.79e+01 1nb9A 147 6.03e+01 b.43.5.1 85515 1s3zA 165 6.08e+01 d.108.1.1 105250 1ogdA 131 6.10e+01 c.133.1.1 92893 1pkhA 204 6.15e+01 b.85.4.1 94832 1mfmA 153 6.16e+01 1mfmA b.1.8.1 22246 1dlwA 116 6.20e+01 1dlyA a.1.1.1 14982 2d1uA 104 6.22e+01 1fkqA 124 6.28e+01 3lzt d.2.1.2 36601 1z7lA 276 6.32e+01 1t98A 287 6.35e+01 1ghhA 81 6.36e+01 1ghhA d.57.1.1 38940 1mw5A 187 6.38e+01 d.259.1.1 91477 1rkd 309 6.41e+01 1rkd c.72.1.1 34928 1o1xA 155 6.45e+01 c.121.1.1 86553 1dd9A 338 6.47e+01 1dd9A e.13.1.1 43254 1v84A 253 6.55e+01 c.68.1.7 108419 1guuA 52 6.63e+01 a.4.1.3 83332 1ycdA 243 6.64e+01 1yrrA 382 6.68e+01 1ec7A 446 6.73e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1x6mA 196 6.80e+01 1zlqA 502 6.82e+01 2gu3A 136 6.88e+01 1h4vB 421 6.89e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 2cfeA 162 6.91e+01 1y0hA 105 6.93e+01 2dcnA 311 7.08e+01 1m5wA 243 7.09e+01 c.1.24.1 84836 1t1uA 639 7.10e+01 2f94F 350 7.13e+01 1xy7A 166 7.20e+01 1f3kA 26 7.22e+01 g.3.6.1 44101 1m7yA 435 7.25e+01 c.67.1.4 78761 2f8lA 344 7.31e+01 2cbzA 237 7.32e+01 1vfgA 390 7.33e+01 a.173.1.1,d.218.1.4 108570,108571 1gadO 330 7.36e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 1fonA 240 7.40e+01 5ptp b.47.1.2 26231 1rrmA 386 7.43e+01 e.22.1.2 105081 1pfbA 55 7.52e+01 b.34.13.2 94655 1f2tB 148 7.62e+01 1f2tB 1wu7A 434 7.80e+01 1xqaA 113 7.90e+01 1lkdA 297 7.94e+01 d.32.1.3,d.32.1.3 78059,78060 1rz3A 201 7.97e+01 c.37.1.6 98132 1aisB 200 7.98e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1oe4A 247 8.02e+01 c.18.1.3 86895 1i4jA 110 8.05e+01 d.55.1.1 76734 1gsoA 431 8.14e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1yrbA 262 8.19e+01 1cliA 345 8.22e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1f7zA 233 8.23e+01 5ptp b.47.1.2 59681 1wznA 252 8.30e+01 1fm4A 159 8.31e+01 1bv1 d.129.3.1 76186 1b9hA 388 8.33e+01 1b9hA c.67.1.4 34488 1hyp 80 8.34e+01 1hyp a.52.1.1 17806 1r5rA 119 8.39e+01 a.39.2.1 97104 1dg9A 157 8.43e+01 1dg9A c.44.1.1 32637 1i2kA 269 8.44e+01 e.17.1.1 90661 1u5vA 273 8.49e+01 1d2vC 466 8.50e+01 1mhlC 1opc 110 8.52e+01 1opc a.4.6.1 16231 1e4fT 419 8.53e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1s2oA 244 8.54e+01 1xwwA 157 8.61e+01 1uxxX 133 8.75e+01 b.18.1.10 100169 2c3nA 247 8.78e+01 2fiuA 99 8.79e+01 1fvkA 189 8.80e+01 1fvkA c.47.1.13 90351 1jf8A 131 8.99e+01 c.44.1.1 66621