Best Alignments for T0349

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1zhvA/T0349-1zhvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zhvA/T0349-1zhvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.8722e-031.47e-11
1vjqA/T0349-1vjqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vjqA/T0349-1vjqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7492e-011.63e-07 k.43.1.1
1yj7A/T0349-1yj7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yj7A/T0349-1yj7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2713e-016.97e-08
1kwmA/T0349-1kwmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1kwmA/T0349-1kwmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5486e-013.73e-09 c.56.5.1
d.58.3.1
1g61A/T0349-1g61A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1g61A/T0349-1g61A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5768e-012.23e-07 1g61A d.126.1.1
1dzkA/T0349-1dzkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dzkA/T0349-1dzkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6729e-011.46e-08 1obpA b.60.1.1
2f06A/T0349-2f06A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f06A/T0349-2f06A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.8704e-017.16e-07
1zvpA/T0349-1zvpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zvpA/T0349-1zvpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0461e+004.47e-08
1v6sA/T0349-1v6sA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v6sA/T0349-1v6sA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4498e+002.80e-05 c.86.1.1
1gnkA/T0349-1gnkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gnkA/T0349-1gnkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5761e+001.15e-06 2pii d.58.5.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001