# TARGET T0349 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0349.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 5.88375 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.079 0.068 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.019 0.141 0.654 2 R 0.054 0.147 0.005 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.064 0.018 0.082 0.620 3 E 0.047 0.111 0.005 0.001 0.006 0.004 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.079 0.015 0.090 0.629 4 L 0.082 0.186 0.003 0.001 0.010 0.005 0.011 0.003 0.001 0.001 0.003 0.001 0.003 0.008 0.002 0.001 0.111 0.013 0.072 0.485 5 L 0.076 0.312 0.002 0.001 0.004 0.004 0.017 0.014 0.001 0.003 0.002 0.001 0.040 0.009 0.005 0.001 0.190 0.012 0.046 0.260 6 R 0.072 0.267 0.002 0.001 0.001 0.001 0.001 0.001 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.084 0.021 0.075 0.464 7 T 0.094 0.239 0.003 0.001 0.001 0.001 0.001 0.001 0.015 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.165 0.067 0.043 0.366 8 N 0.085 0.085 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.085 0.037 0.096 0.604 9 D 0.056 0.019 0.035 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.010 0.355 0.497 10 A 0.023 0.024 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.039 0.008 0.267 0.636 11 V 0.008 0.083 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.009 0.534 0.345 12 L 0.022 0.435 0.002 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.005 0.316 0.204 13 L 0.006 0.954 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.003 0.033 14 S 0.004 0.951 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.003 0.037 15 A 0.008 0.952 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.001 0.031 16 V 0.010 0.946 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.002 0.031 17 G 0.010 0.926 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.003 0.051 18 A 0.017 0.900 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.066 19 L 0.046 0.891 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.001 0.044 20 L 0.042 0.879 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.002 0.043 21 D 0.130 0.600 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.115 0.008 0.129 22 G 0.340 0.213 0.011 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.078 0.024 0.324 23 A 0.139 0.059 0.237 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.028 0.101 0.421 24 D 0.122 0.035 0.011 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.065 0.024 0.201 0.535 25 I 0.284 0.058 0.030 0.017 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.084 0.017 0.057 0.449 26 G 0.021 0.059 0.002 0.002 0.004 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.389 0.007 0.113 0.391 27 H 0.067 0.037 0.007 0.001 0.005 0.002 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.194 0.014 0.118 0.546 28 L 0.121 0.065 0.003 0.001 0.001 0.002 0.003 0.002 0.001 0.001 0.001 0.002 0.006 0.029 0.003 0.002 0.488 0.006 0.066 0.199 29 V 0.032 0.118 0.001 0.001 0.001 0.001 0.004 0.004 0.001 0.003 0.003 0.001 0.026 0.012 0.018 0.004 0.267 0.005 0.130 0.369 30 L 0.023 0.101 0.005 0.001 0.002 0.001 0.001 0.001 0.010 0.023 0.001 0.002 0.001 0.001 0.001 0.001 0.509 0.009 0.046 0.264 31 D 0.027 0.091 0.002 0.001 0.001 0.001 0.001 0.001 0.125 0.021 0.014 0.002 0.002 0.001 0.001 0.001 0.428 0.010 0.031 0.244 32 Q 0.099 0.066 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.141 0.019 0.093 0.572 33 N 0.078 0.067 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.043 0.028 0.413 0.360 34 M 0.377 0.053 0.029 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.072 0.072 0.174 0.217 35 S 0.044 0.151 0.005 0.002 0.005 0.002 0.002 0.001 0.001 0.001 0.007 0.001 0.002 0.001 0.001 0.001 0.133 0.014 0.273 0.357 36 I 0.090 0.058 0.050 0.002 0.031 0.020 0.008 0.007 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.211 0.017 0.113 0.389 37 L 0.150 0.085 0.005 0.001 0.001 0.013 0.002 0.001 0.002 0.001 0.001 0.001 0.002 0.003 0.001 0.001 0.088 0.008 0.369 0.270 38 E 0.092 0.134 0.003 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.122 0.010 0.178 0.452 39 G 0.111 0.153 0.006 0.001 0.001 0.001 0.001 0.001 0.011 0.006 0.001 0.001 0.005 0.002 0.001 0.002 0.176 0.015 0.047 0.460 40 S 0.618 0.093 0.045 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.010 0.013 0.170 41 L 0.075 0.336 0.017 0.002 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.133 0.011 0.040 0.370 42 G 0.246 0.104 0.033 0.001 0.004 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.217 0.026 0.047 0.308 43 V 0.085 0.079 0.208 0.008 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.149 0.010 0.044 0.410 44 I 0.052 0.062 0.015 0.006 0.010 0.003 0.003 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.482 0.003 0.033 0.322 45 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 46 R 0.011 0.012 0.003 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.432 0.005 0.070 0.457 47 R 0.138 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.488 0.015 0.043 0.290 48 V 0.129 0.025 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.600 0.007 0.024 0.203 49 L 0.023 0.023 0.002 0.001 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.737 0.004 0.021 0.177 50 V 0.006 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.809 0.002 0.023 0.139 51 H 0.003 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.224 0.006 0.194 0.561 52 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.195 0.006 0.058 0.737 53 D 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.006 0.184 0.792 54 D 0.206 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.011 0.400 0.378 55 L 0.281 0.268 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.008 0.065 0.369 56 A 0.040 0.467 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.013 0.098 0.377 57 G 0.061 0.414 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.017 0.063 0.441 58 A 0.084 0.696 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.010 0.193 59 R 0.014 0.896 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.006 0.076 60 R 0.007 0.898 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.004 0.086 61 L 0.007 0.952 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.037 62 L 0.003 0.977 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.016 63 T 0.004 0.975 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.015 64 D 0.012 0.963 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.017 65 A 0.040 0.866 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.061 0.001 0.029 66 G 0.556 0.163 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.204 0.004 0.064 67 L 0.007 0.009 0.945 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.025 68 A 0.015 0.047 0.001 0.009 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.143 0.005 0.115 0.657 69 H 0.058 0.044 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.066 0.005 0.068 0.748 70 E 0.096 0.110 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.003 0.117 0.010 0.139 0.512 71 L 0.237 0.157 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.004 0.004 0.004 0.002 0.104 0.024 0.077 0.375 72 R 0.148 0.263 0.012 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.095 0.030 0.073 0.364 73 S 0.136 0.141 0.014 0.001 0.001 0.001 0.001 0.001 0.012 0.012 0.003 0.001 0.001 0.001 0.001 0.001 0.062 0.038 0.057 0.518 74 D 0.080 0.055 0.009 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.020 0.071 0.731 75 D 0.047 0.022 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.018 0.186 0.697