# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjqA 79 4.16e-02 k.43.1.1 100830 1zhvA 134 5.48e-02 2f06A 144 9.17e-01 1yj7A 171 1.22e+00 1rybA 212 1.41e+00 c.56.3.1 98098 1b65A 375 1.42e+00 1b65A d.154.1.1 42020 1eexB 224 1.63e+00 1dioB c.51.3.1 33213 1gh9A 71 1.93e+00 1gh9A g.41.6.1 45266 2fclA 169 2.52e+00 1dzkA 157 2.55e+00 1obpA b.60.1.1 27096 2hhmA 276 2.72e+00 1imbA e.7.1.1 42955 1imbA 277 2.73e+00 1imbA e.7.1.1 42957 1kwmA 402 2.81e+00 c.56.5.1,d.58.3.1 73079,73080 2ewrA 170 2.89e+00 1umgA 362 2.98e+00 d.280.1.1 107956 2gukA 120 3.10e+00 1xppA 115 3.17e+00 2b30A 301 3.23e+00 1s2oA 244 3.65e+00 2bjiA 277 4.16e+00 1jd1A 129 4.46e+00 1qu9A d.79.1.1 62890 1ea9C 583 4.50e+00 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1dp4A 435 4.75e+00 1dp4A c.93.1.1 35710 1l5jA 865 5.09e+00 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1yqhA 109 5.30e+00 1g61A 228 5.40e+00 1g61A d.126.1.1 41126 1n71A 180 5.44e+00 d.108.1.1 85370 1b87A 181 5.46e+00 1b87A d.108.1.1 40797 1f2tB 148 5.61e+00 1f2tB 1k1xA 659 5.64e+00 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1tlfA 301 5.66e+00 1tlfA c.93.1.1 35687 2ax4A 198 5.78e+00 1jyeA 349 5.81e+00 c.93.1.1 67455 1ve1A 304 5.91e+00 2cg4A 152 6.55e+00 1obpA 159 6.92e+00 1obpA b.60.1.1 27092 1hdoA 206 7.10e+00 1he2A c.2.1.2 60965 1ewsA 32 7.16e+00 1ewsA g.9.1.1 59534 1omzA 293 7.19e+00 c.68.1.15 87093 2c60A 111 7.46e+00 1qd9A 124 7.65e+00 1qu9A d.79.1.1 39758 1yioA 208 7.67e+00 1yfnA 118 7.76e+00 2ct8A 497 8.04e+00 1hn2A 159 8.21e+00 b.60.1.1 65890 1gt1A 159 8.22e+00 b.60.1.1 90515 2a4nA 182 8.31e+00 2g76A 335 8.43e+00 1j7xA 302 8.98e+00 c.14.1.2 66425 1pba 81 9.16e+00 1pytA d.58.3.1 39067 1kdgA 546 9.83e+00 c.3.1.2,d.16.1.1 77337,77338 1jbeA 128 9.91e+00 3chy c.23.1.1 62845 1gnkA 112 9.97e+00 2pii d.58.5.1 39073 1ble 163 1.02e+01 1ble c.38.1.1 32475 1id1A 153 1.04e+01 1id1A c.2.1.9 62286 1wcwA 261 1.05e+01 1mkzA 172 1.06e+01 c.57.1.1 84998 1rp0A 284 1.09e+01 2cvlA 124 1.09e+01 1v7rA 186 1.09e+01 c.51.4.1 100482 1yqtA 538 1.12e+01 1meoA 209 1.13e+01 c.65.1.1 79035 1v6sA 390 1.15e+01 c.86.1.1 100424 3chy 128 1.17e+01 3chy c.23.1.1 31038 1w30A 201 1.24e+01 1zvpA 133 1.30e+01 1qyrA 252 1.31e+01 c.66.1.24 104657 1oo0A 147 1.32e+01 d.232.1.1 87182 1edg 380 1.33e+01 1edg c.1.8.3 28807 1ezwA 349 1.37e+01 1ezwA c.1.16.3 29558 2pii 112 1.37e+01 2pii d.58.5.1 39071 1bvoA 175 1.38e+01 1a3qA b.2.5.3 22457 1x9zA 188 1.40e+01 1jfrA 262 1.42e+01 1jfrA c.69.1.16 34724 1ho1A 242 1.45e+01 1ho1A c.1.24.1 61097 1r6dA 337 1.47e+01 c.2.1.2 97148 1u5tC 202 1.47e+01 a.4.5.54,a.4.5.54 107688,107689 1yrrA 382 1.53e+01 1r1qA 100 1.53e+01 d.93.1.1 104763 1wexA 104 1.54e+01 1atlA 202 1.59e+01 1atlA d.92.1.9 40322 2fiuA 99 1.60e+01 1x31C 206 1.77e+01 1cy5A 97 1.78e+01 1cy5A a.77.1.3 18430 1ta3B 303 1.80e+01 c.1.8.3 106732 1wr8A 231 1.84e+01 2af4C 333 1.84e+01 1gmuA 143 1.87e+01 b.107.1.1,d.58.38.1 65335,65336 1j3mA 129 1.92e+01 d.129.7.1 103836 1xhfA 123 1.96e+01 2d1uA 104 1.97e+01 1qu9A 128 2.01e+01 1qu9A d.79.1.1 39755 1sbyA 254 2.03e+01 1oxkB 134 2.03e+01 c.23.1.1 93691 1b16A 254 2.05e+01 1b16A c.2.1.2 29875 1w25A 459 2.09e+01 1nksA 194 2.10e+01 1nksA c.37.1.1 31886 1mucA 373 2.11e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 2cvjA 180 2.21e+01 1ospO 257 2.23e+01 1ospO b.76.1.1 27971 1tl9A 339 2.24e+01 5abp 306 2.25e+01 8abp c.93.1.1 35651 1uv7A 110 2.27e+01 d.67.4.1 100040 2fe7A 166 2.36e+01 1m7xA 617 2.38e+01 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1y60A 169 2.41e+01 1w8iA 156 2.46e+01 1s69A 124 2.47e+01 a.1.1.1 105305 1xd7A 145 2.48e+01 a.4.5.55 109566 1rz4A 226 2.48e+01 a.4.5.53,a.118.1.18 105131,105132 1xpmA 396 2.51e+01 8abp 306 2.57e+01 8abp c.93.1.1 35647 1wi6A 88 2.65e+01 1ctf 74 2.66e+01 1ctf d.45.1.1 38759 1ub0A 258 2.71e+01 c.72.1.2 88394 1yzyA 413 2.74e+01 2ci1A 275 2.83e+01 1rv9A 259 2.83e+01 d.194.1.2 105105 1rypL 212 2.83e+01 d.153.1.4 41880 1rtxA 123 2.87e+01 a.1.1.1 97827 2bepA 159 2.87e+01 1ug8A 87 2.90e+01 d.68.7.1 107825 2fqxA 318 2.90e+01 1fcjA 322 2.90e+01 1oasA c.79.1.1 35289 1dkuA 317 2.92e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1chd 203 2.92e+01 1chd c.40.1.1 32478 1oz9A 150 2.93e+01 d.92.1.15 93808 1xpkC 388 2.94e+01 1kwgA 645 2.98e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 3rubS 123 3.04e+01 1rboC d.73.1.1 39616 1xzzA 246 3.04e+01 2agaA 190 3.06e+01 1bu8A 452 3.07e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 1han 297 3.07e+01 1han d.32.1.3,d.32.1.3 38506,38507 1lkdA 297 3.07e+01 d.32.1.3,d.32.1.3 78059,78060 1xewY 172 3.09e+01 1wwkA 307 3.11e+01 2fiqA 420 3.14e+01 1xb4A 202 3.16e+01 1nox 205 3.20e+01 1nox d.90.1.1 40242 1t1vA 93 3.23e+01 c.47.1.14 106278 2adbA 148 3.32e+01 2g0dA 409 3.36e+01 1qahA 136 3.37e+01 d.79.1.1 96338 1ykjA 394 3.38e+01 1fgs 428 3.49e+01 1fgs c.59.1.2,c.72.2.2 33959,34962 1itxA 419 3.53e+01 c.1.8.5,d.26.3.1 71425,71426 1ukuA 102 3.60e+01 d.58.5.2 99533 1vhxA 150 3.60e+01 c.55.3.8 100712 1yzbA 182 3.62e+01 1nn5A 215 3.63e+01 c.37.1.1 85892 1zmaA 118 3.74e+01 1wdyA 285 3.80e+01 1pjqA 457 3.81e+01 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1mzhA 225 3.83e+01 c.1.10.1 79698 1vf8A 377 3.83e+01 1e2fA 215 3.85e+01 3tmkA c.37.1.1 59164 1e2gA 215 3.91e+01 3tmkA c.37.1.1 59165 1ujcA 161 4.05e+01 2f1rA 171 4.05e+01 1h6hA 143 4.06e+01 d.189.1.1 65681 1qysA 106 4.07e+01 k.41.1.1 96603 1s7hA 200 4.08e+01 d.58.48.2 105349 1fjgP 88 4.09e+01 1emwA d.27.1.1 38444 2aeeA 211 4.13e+01 1wu7A 434 4.21e+01 1jqgA 433 4.29e+01 c.56.5.1,d.58.3.1 71791,71792 1wycA 392 4.32e+01 1xp8A 366 4.34e+01 1pbe 394 4.47e+01 1pbe c.3.1.2,d.16.1.2 30338,37869 1j0fA 100 4.52e+01 c.47.1.14 90739 1eemA 241 4.62e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1rz3A 201 4.75e+01 c.37.1.6 98132 1e12A 253 4.76e+01 1c3wA f.13.1.1 43428 1vq3A 94 4.78e+01 1ii5A 233 4.79e+01 c.94.1.1 62412 1njrA 284 4.81e+01 c.50.1.2 103858 1h75A 81 4.84e+01 1h75A c.47.1.1 60716 1w8kA 447 4.84e+01 1avoA 60 4.86e+01 1avoA a.24.8.1 16619 8fabA 212 4.92e+01 8fabA b.1.1.1,b.1.1.2 19772,20882 1zt2B 212 4.94e+01 1lj9A 144 4.97e+01 a.4.5.28 78035 1x6vA 630 4.99e+01 1ve4A 206 5.08e+01 1ynfA 458 5.08e+01 1tf1A 198 5.09e+01 d.110.2.2 106826 1y81A 138 5.16e+01 1wd7A 261 5.17e+01 1cmbA 104 5.26e+01 1cmbA a.43.1.5 17460 2ethA 154 5.30e+01 2fwuA 157 5.32e+01 1oniA 137 5.38e+01 d.79.1.1 87144 1cmcA 104 5.41e+01 1cmbA a.43.1.5 17462 1wybA 392 5.43e+01 1e9lA 377 5.44e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1x54A 434 5.50e+01 1od8A 313 5.53e+01 c.1.8.3 86838 1v0lA 313 5.53e+01 c.1.8.3 108207 1e0wA 313 5.55e+01 1taxA c.1.8.3 59150 1vixA 420 5.58e+01 c.56.5.4,d.58.19.1 100777,100778 1hh2P 344 5.59e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 2d27A 149 5.63e+01 1yr4A 237 5.63e+01 2f91A 237 5.65e+01 1w78A 422 5.67e+01 1rp4A 389 5.69e+01 a.227.1.1 105027 2gbp 309 5.77e+01 1gca c.93.1.1 35657 2a8mA 420 5.80e+01 1pytA 94 5.82e+01 1pytA d.58.3.1 39064 1wy5A 317 5.82e+01 1q1oA 98 5.91e+01 d.15.2.2 95596 1u11A 182 5.96e+01 c.23.8.1 107576 1wxdA 263 5.96e+01 2a8lA 420 5.96e+01 2cy0A 263 6.01e+01 2d5cA 263 6.02e+01 1m40A 263 6.17e+01 e.3.1.1 74437 1iqzA 81 6.23e+01 d.58.1.4 66281 1o4sA 389 6.33e+01 c.67.1.1 86620 1k0iA 394 6.41e+01 c.3.1.2,d.16.1.2 67942,67943 2gqrA 237 6.41e+01 1ypqA 135 6.48e+01 1ermA 263 6.48e+01 1btl e.3.1.1 42690 1xcbA 211 6.51e+01 a.4.5.38,c.2.1.12 109552,109553 1v8cA 168 6.51e+01 d.15.3.1,d.129.5.1 100495,100496 2a8jA 420 6.56e+01 1btl 263 6.60e+01 1btl e.3.1.1 42691 1lngA 87 6.61e+01 d.201.1.1 74045 1v54E 109 6.65e+01 a.118.11.1 100326 1dq3A 454 6.74e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1efyA 350 6.79e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1v5xA 203 6.82e+01 c.1.2.4 100377 1reqB 637 6.87e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 2f5tX 233 6.88e+01 1z3iX 644 6.88e+01 1q9uA 130 6.88e+01 d.129.7.1 96314 1z5yE 149 6.89e+01 1k1eA 180 6.94e+01 c.108.1.5 67995 2mltA 27 6.95e+01 j.19.1.1 46171 2occE 109 7.02e+01 2occE a.118.11.1 19224 2f1kA 279 7.05e+01 1g2iA 166 7.08e+01 1g2iA c.23.16.2 31438 1v5mA 136 7.13e+01 b.55.1.1 108379 1j6wA 175 7.26e+01 1j98A d.185.1.2 62663 1io0A 185 7.31e+01 c.10.1.1 76753 1wb0A 445 7.31e+01 1o26A 232 7.45e+01 d.207.1.1 86566 1mixA 206 7.45e+01 a.11.2.1,b.55.1.5 79166,79167 1ycdA 243 7.46e+01 2f6rA 281 7.49e+01 1ga8A 311 7.50e+01 1ga8A c.68.1.4 34516 1m5wA 243 7.56e+01 c.1.24.1 84836 1tjyA 316 7.58e+01 c.93.1.1 107062 1xfiA 367 7.63e+01 e.50.1.1 109584 1vpkA 378 7.65e+01 1nwzA 125 7.65e+01 d.110.3.1 86370 3pyp 125 7.65e+01 3pyp d.110.3.1 40897 16vpA 366 7.67e+01 16vpA d.180.1.1 42601 1gdvA 85 7.69e+01 1ctj a.3.1.1 60458 1jcfA 344 7.70e+01 c.55.1.1,c.55.1.1 62878,62879 1fonA 240 7.78e+01 5ptp b.47.1.2 26231 1ivnA 190 7.80e+01 c.23.10.5 83719 1kamA 194 7.81e+01 c.26.1.3 72254 1whbA 157 7.88e+01 1mumA 295 7.97e+01 c.1.12.7 85108 1mp1A 111 8.01e+01 a.188.1.1 91382 1zgkA 308 8.02e+01 2a5hA 416 8.09e+01 1nm2A 317 8.18e+01 c.19.1.1,d.58.23.1 80654,80655 1u6dX 308 8.18e+01 1wddS 128 8.20e+01 1gx1A 160 8.22e+01 d.79.5.1 70675 2cbzA 237 8.35e+01 1srqA 341 8.53e+01 e.55.1.1 105967 1bywA 110 8.55e+01 1bywA d.110.3.6 40912 1hkkA 364 8.56e+01 c.1.8.5,d.26.3.1 90634,90635 1w1hA 151 8.59e+01 1rf6A 427 8.59e+01 d.68.2.2 97366 1n82A 331 8.59e+01 c.1.8.3 91703 1z7lA 276 8.63e+01 1ct5A 256 8.64e+01 1ct5A c.1.6.2 28663 1gz2A 142 8.66e+01 d.169.1.1 83392 1kay 381 8.67e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1mfmA 153 8.69e+01 1mfmA b.1.8.1 22246 1tzaA 134 8.69e+01 b.1.23.1 107468 1tyyA 339 8.80e+01 1y0hA 105 8.82e+01 1t0aA 159 8.86e+01 1k4nA 192 8.90e+01 d.32.1.5 72059