# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zhvA 134 3.22e-02 2g0dA 409 4.34e-02 2eueA 279 5.70e-02 1g61A 228 2.45e-01 1g61A d.126.1.1 41126 2fe7A 166 6.48e-01 1tl9A 339 7.52e-01 1umnA 165 8.89e-01 a.25.1.1 99607 1dzkA 157 1.22e+00 1obpA b.60.1.1 27096 1ccwA 137 1.22e+00 1be1 c.23.6.1 31238 1v6sA 390 1.28e+00 c.86.1.1 100424 1yqgA 263 2.75e+00 2gq1A 332 3.80e+00 1v2xA 194 3.99e+00 c.116.1.1 100274 1sgwA 214 4.77e+00 c.37.1.12 105541 1jbeA 128 4.84e+00 3chy c.23.1.1 62845 3chy 128 4.89e+00 3chy c.23.1.1 31038 1d2vC 466 5.02e+00 1mhlC 1wdyA 285 5.35e+00 1w2tA 432 5.72e+00 1a05A 358 6.81e+00 1cnzA c.77.1.1 35059 1uypA 432 6.87e+00 b.29.1.19,b.67.2.3 100176,100177 1rtxA 123 6.96e+00 a.1.1.1 97827 1oxkB 134 7.03e+00 c.23.1.1 93691 1f7zA 233 7.67e+00 5ptp b.47.1.2 59681 2atzA 180 7.82e+00 1vqoB 338 8.06e+00 1yj7A 171 8.33e+00 1lfwA 470 8.44e+00 c.56.5.4,d.58.19.1 77942,77943 2f06A 144 8.46e+00 1cxpC 466 8.54e+00 1mhlC 1o1xA 155 9.44e+00 c.121.1.1 86553 1mszA 86 9.67e+00 d.68.7.1 79428 1vcsA 102 1.03e+01 1wyzA 242 1.05e+01 1u5hA 273 1.09e+01 1lb2B 84 1.12e+01 a.60.3.1 77871 2f4nA 273 1.12e+01 1yioA 208 1.15e+01 1r1qA 100 1.16e+01 d.93.1.1 104763 1jj2B 337 1.21e+01 1ffkB b.43.3.2 63086 1m7vA 363 1.22e+01 d.174.1.1 78748 1pba 81 1.23e+01 1pytA d.58.3.1 39067 1s72B 338 1.25e+01 b.43.3.2 105320 1ti6B 274 1.47e+01 b.3.5.1,d.58.1.5 106976,106977 1dpo 223 1.59e+01 5ptp b.47.1.2 25975 1wwkA 307 1.65e+01 1eyhA 144 1.68e+01 1eduA a.118.9.1 19214 1yqzA 438 1.69e+01 1njkA 156 1.71e+01 d.38.1.1 85818 1s69A 124 1.72e+01 a.1.1.1 105305 1ho1A 242 1.73e+01 1ho1A c.1.24.1 61097 1z6kA 293 1.73e+01 1ctf 74 1.76e+01 1ctf d.45.1.1 38759 1qzzA 374 1.76e+01 a.4.5.29,c.66.1.12 96719,96720 1j8fA 323 1.76e+01 1j8fA c.31.1.5 62738 2a9sA 171 1.76e+01 1euwA 152 1.78e+01 1dupA b.85.4.1 28349 1fjgP 88 1.80e+01 1emwA d.27.1.1 38444 1xcbA 211 1.82e+01 a.4.5.38,c.2.1.12 109552,109553 1obbA 480 1.84e+01 c.2.1.5,d.162.1.2 86760,86761 1n1bA 549 1.87e+01 a.102.4.1,a.128.1.3 79799,79800 1lrv 244 1.94e+01 1lrv a.118.1.5 19146 1wd5A 208 1.94e+01 1j93A 353 1.97e+01 c.1.22.1 66454 1vggA 161 1.97e+01 1u9cA 224 2.02e+01 1tjyA 316 2.02e+01 c.93.1.1 107062 1umhA 184 2.12e+01 b.18.1.21 99605 1fp2A 352 2.23e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1l3iA 192 2.24e+01 c.66.1.22 77676 1yqhA 109 2.26e+01 1s2wA 295 2.27e+01 c.1.12.7 98407 1q2lA 939 2.27e+01 1rypL 212 2.27e+01 d.153.1.4 41880 2g76A 335 2.30e+01 1idrA 136 2.46e+01 1dlyA a.1.1.1 62301 1gnkA 112 2.48e+01 2pii d.58.5.1 39073 1o4sA 389 2.55e+01 c.67.1.1 86620 1yrrA 382 2.57e+01 1xhfA 123 2.61e+01 1uspA 139 2.66e+01 d.227.1.1 99879 1fjsA 234 2.75e+01 1ucyE b.47.1.2 26336 1mctA 223 2.83e+01 5ptp b.47.1.2 25961 1jd1A 129 2.84e+01 1qu9A d.79.1.1 62890 1w6kA 732 2.86e+01 1kwmA 402 2.89e+01 c.56.5.1,d.58.3.1 73079,73080 1bjaA 95 2.91e+01 1bjaA a.4.5.9 16122 1ul7A 102 2.94e+01 d.129.6.1 99540 1h9hE 223 2.95e+01 b.47.1.2 103810 1dz3A 130 3.02e+01 1dz3A c.23.1.1 31105 2ex4A 241 3.04e+01 2a9fA 398 3.06e+01 1th8A 145 3.14e+01 d.122.1.3 106908 1p90A 145 3.16e+01 c.55.5.2 94377 1s83A 223 3.21e+01 b.47.1.2 98718 1vjqA 79 3.28e+01 k.43.1.1 100830 1u5kA 244 3.49e+01 1iqzA 81 3.60e+01 d.58.1.4 66281 1wwpA 119 3.60e+01 1tia 279 3.62e+01 3tgl c.69.1.17 34737 1g2lA 235 3.65e+01 b.47.1.2 65112 1mp1A 111 3.70e+01 a.188.1.1 91382 1yzhA 214 3.73e+01 1v92A 46 3.82e+01 a.5.2.3 100531 2olbA 517 3.95e+01 1jevA c.94.1.1 35721 1wcwA 261 4.01e+01 1v8fA 276 4.03e+01 c.26.1.4 100503 1bvoA 175 4.07e+01 1a3qA b.2.5.3 22457 1rz4A 226 4.15e+01 a.4.5.53,a.118.1.18 105131,105132 1o70A 324 4.23e+01 b.118.1.1,b.118.1.1 81115,81116 1umgA 362 4.33e+01 d.280.1.1 107956 1vixA 420 4.52e+01 c.56.5.4,d.58.19.1 100777,100778 1mucA 373 4.52e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1adt 356 4.53e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1ug1A 92 4.58e+01 b.34.2.1 99360 2ah5A 210 4.60e+01 1anv 356 4.62e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17890,45365,45371 1jetA 517 4.63e+01 1jevA c.94.1.1 35718 1whzA 70 4.69e+01 1fecA 490 4.72e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1q1oA 98 4.83e+01 d.15.2.2 95596 2g03A 194 4.83e+01 1jqgA 433 4.91e+01 c.56.5.1,d.58.3.1 71791,71792 1fnoA 417 4.93e+01 d.58.19.1,c.56.5.4 70145,75841 1uzcA 71 4.93e+01 a.159.2.1 100222 1xahA 354 4.99e+01 1u5vA 273 5.03e+01 1cmcA 104 5.08e+01 1cmbA a.43.1.5 17462 2grrA 161 5.14e+01 1zvpA 133 5.19e+01 2fb1A 226 5.25e+01 2b30A 301 5.31e+01 1meoA 209 5.38e+01 c.65.1.1 79035 2aehA 369 5.42e+01 1e3dA 266 5.46e+01 2frvA e.19.1.1 59188 1t1vA 93 5.59e+01 c.47.1.14 106278 1tif 78 5.65e+01 1tif d.15.8.1 37836 1wd7A 261 5.73e+01 1o2dA 371 5.78e+01 e.22.1.2 86591 1ve4A 206 5.79e+01 1aym2 261 5.89e+01 1aym2 1hxvA 113 6.06e+01 d.26.1.1 71089 1zkkA 167 6.10e+01 2fq4A 192 6.13e+01 1nm2A 317 6.13e+01 c.19.1.1,d.58.23.1 80654,80655 1tyyA 339 6.20e+01 1lngA 87 6.20e+01 d.201.1.1 74045 1j0fA 100 6.27e+01 c.47.1.14 90739 1xmaA 145 6.29e+01 1bsg 266 6.30e+01 1btl e.3.1.1 42729 1k4nA 192 6.32e+01 d.32.1.5 72059 1gg3A 279 6.38e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 1wu7A 434 6.38e+01 1cmbA 104 6.39e+01 1cmbA a.43.1.5 17460 1ys7A 233 6.45e+01 1io0A 185 6.47e+01 c.10.1.1 76753 2b61A 377 6.66e+01 1yqtA 538 6.70e+01 1yrcA 414 6.73e+01 1s7zA 117 6.73e+01 a.159.3.1 98715 1vj1A 363 6.73e+01 b.35.1.2,c.2.1.1 100794,100795 1pymA 295 6.82e+01 1pymA c.1.12.7 29308 1f7uA 607 6.95e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1sedA 117 6.95e+01 a.219.1.1 105449 1wj7A 104 7.02e+01 1xqaA 113 7.10e+01 1s3zA 165 7.23e+01 d.108.1.1 105250 2scpA 174 7.29e+01 2scpA a.39.1.5 17256 1jmsA 381 7.29e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1uf3A 228 7.32e+01 d.159.1.6 99317 1y0eA 223 7.40e+01 1ogiA 303 7.41e+01 b.43.4.2,c.25.1.1 92914,92915 1h6kA 757 7.48e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1pjr 724 7.54e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 2ct8A 497 7.61e+01 1mdwA 328 7.64e+01 d.3.1.3 84934 1h4wA 224 7.75e+01 b.47.1.2 65622 1hdoA 206 7.77e+01 1he2A c.2.1.2 60965 2ewrA 170 7.77e+01 1dz4A 414 7.82e+01 1phd a.104.1.1 18903 1k8kG 151 8.21e+01 a.118.13.1 68313 1rmwA 212 8.23e+01 2bsaA 303 8.28e+01 1v8aA 265 8.28e+01 c.72.1.2 100494 1n8nA 212 8.39e+01 c.108.1.12 91706 2b82A 211 8.40e+01 1ryaA 160 8.43e+01 d.113.1.5 105122 1fobA 334 8.54e+01 c.1.8.3 83255 1jb0F 164 8.61e+01 1jb0F f.23.16.1 62825 1ble 163 8.64e+01 1ble c.38.1.1 32475 1fjgQ 105 8.64e+01 1fjfQ b.40.4.5 25352 1m5wA 243 8.71e+01 c.1.24.1 84836 1w34A 304 8.87e+01 1fkqA 124 8.91e+01 3lzt d.2.1.2 36601 2al6A 375 8.91e+01 1vr5A 547 8.97e+01 1qmqA 414 8.98e+01 1phd a.104.1.1 18907