PFRMAT RR TARGET T0349 AUTHOR SAM-T07 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa7str2_7near3nsep5.47.data03.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz MODEL 1 MRELLRTNDAVLLSAVGALLDGADIGHLVLDQNMSILEGSLGVIPRRVLV HEDDLAGARRLLTDAGLAHELRSDD 4 13 0 8 0.599139 4 14 0 8 0.516825 4 15 0 8 0.609347 4 16 0 8 0.577289 4 17 0 8 0.442516 4 18 0 8 0.502042 4 19 0 8 0.471371 4 28 0 8 0.497635 4 30 0 8 0.431831 4 41 0 8 0.440088 4 43 0 8 0.44903 4 44 0 8 0.47043 4 46 0 8 0.442909 4 47 0 8 0.509004 4 48 0 8 0.604647 4 49 0 8 0.557539 4 50 0 8 0.481229 4 58 0 8 0.561276 4 61 0 8 0.540344 5 14 0 8 0.692987 5 15 0 8 0.773041 5 16 0 8 0.753175 5 17 0 8 0.582682 5 18 0 8 0.679768 5 19 0 8 0.677975 5 20 0 8 0.565664 5 23 0 8 0.464136 5 25 0 8 0.57859 5 27 0 8 0.44804 5 28 0 8 0.653287 5 29 0 8 0.45541 5 30 0 8 0.554106 5 31 0 8 0.428694 5 34 0 8 0.502345 5 36 0 8 0.51186 5 37 0 8 0.550262 5 41 0 8 0.593343 5 42 0 8 0.501616 5 43 0 8 0.578384 5 44 0 8 0.614178 5 45 0 8 0.433677 5 46 0 8 0.524983 5 47 0 8 0.616206 5 48 0 8 0.746266 5 49 0 8 0.703986 5 50 0 8 0.593545 5 55 0 8 0.466521 5 58 0 8 0.672773 5 61 0 8 0.590963 5 62 0 8 0.545451 5 71 0 8 0.428029 6 15 0 8 0.522107 6 16 0 8 0.478739 6 18 0 8 0.428493 6 28 0 8 0.443035 6 41 0 8 0.430195 6 44 0 8 0.428178 6 46 0 8 0.445209 6 47 0 8 0.458149 6 48 0 8 0.506228 6 49 0 8 0.459472 6 58 0 8 0.453227 6 61 0 8 0.447148 7 16 0 8 0.598176 7 17 0 8 0.447022 7 18 0 8 0.513545 7 19 0 8 0.475243 7 28 0 8 0.473402 7 30 0 8 0.467543 7 34 0 8 0.447461 7 36 0 8 0.437521 7 37 0 8 0.450251 7 41 0 8 0.476786 7 43 0 8 0.460161 7 44 0 8 0.484059 7 46 0 8 0.454312 7 47 0 8 0.502915 7 48 0 8 0.58216 7 49 0 8 0.552222 7 50 0 8 0.488528 7 58 0 8 0.584791 7 61 0 8 0.545424 8 30 0 8 0.460164 8 31 0 8 0.453334 8 34 0 8 0.435305 8 41 0 8 0.429513 8 46 0 8 0.455137 8 47 0 8 0.454748 8 48 0 8 0.463809 8 49 0 8 0.449201 9 18 0 8 0.461727 9 28 0 8 0.43616 9 30 0 8 0.568291 9 31 0 8 0.528382 9 34 0 8 0.473047 9 36 0 8 0.452932 9 37 0 8 0.456712 9 41 0 8 0.454448 9 43 0 8 0.439503 9 44 0 8 0.455025 9 46 0 8 0.470272 9 47 0 8 0.486569 9 48 0 8 0.521709 9 49 0 8 0.516363 9 50 0 8 0.482426 9 58 0 8 0.531853 9 61 0 8 0.515353 10 19 0 8 0.450615 10 28 0 8 0.461684 10 30 0 8 0.593234 10 31 0 8 0.544701 10 34 0 8 0.471074 10 36 0 8 0.446862 10 37 0 8 0.457877 10 41 0 8 0.448627 10 43 0 8 0.443349 10 44 0 8 0.460134 10 46 0 8 0.472448 10 47 0 8 0.504093 10 48 0 8 0.553879 10 49 0 8 0.542849 10 50 0 8 0.492407 10 58 0 8 0.565856 10 61 0 8 0.552632 11 20 0 8 0.497138 11 28 0 8 0.561593 11 29 0 8 0.445846 11 30 0 8 0.656913 11 31 0 8 0.537433 11 34 0 8 0.511923 11 36 0 8 0.477995 11 37 0 8 0.519659 11 41 0 8 0.548306 11 42 0 8 0.453137 11 43 0 8 0.533501 11 44 0 8 0.58066 11 45 0 8 0.435551 11 46 0 8 0.481762 11 47 0 8 0.596802 11 48 0 8 0.720268 11 49 0 8 0.714706 11 50 0 8 0.61039 11 58 0 8 0.720766 11 61 0 8 0.651755 11 62 0 8 0.573915 12 28 0 8 0.649545 12 29 0 8 0.470477 12 30 0 8 0.685181 12 31 0 8 0.511731 12 34 0 8 0.546398 12 36 0 8 0.507945 12 37 0 8 0.563727 12 41 0 8 0.624117 12 42 0 8 0.496631 12 43 0 8 0.604703 12 44 0 8 0.653195 12 45 0 8 0.454489 12 46 0 8 0.501874 12 47 0 8 0.662695 12 48 0 8 0.790958 12 49 0 8 0.779159 12 50 0 8 0.679114 12 58 0 8 0.785722 12 61 0 8 0.696808 12 62 0 8 0.68437 13 23 0 8 0.448701 13 25 0 8 0.58799 13 28 0 8 0.705697 13 29 0 8 0.487252 13 30 0 8 0.668826 13 31 0 8 0.470319 13 34 0 8 0.559281 13 36 0 8 0.529865 13 37 0 8 0.579713 13 41 0 8 0.652975 13 42 0 8 0.500083 13 43 0 8 0.629327 13 44 0 8 0.670936 13 45 0 8 0.452318 13 46 0 8 0.51617 13 47 0 8 0.68317 13 48 0 8 0.807123 13 49 0 8 0.78285 13 50 0 8 0.676025 13 55 0 8 0.443373 13 58 0 8 0.812138 13 61 0 8 0.733037 13 62 0 8 0.73374 13 65 0 8 0.433982 14 23 0 8 0.484282 14 25 0 8 0.619825 14 28 0 8 0.64542 14 29 0 8 0.430373 14 30 0 8 0.580074 14 34 0 8 0.512071 14 36 0 8 0.483351 14 37 0 8 0.516157 14 41 0 8 0.591712 14 42 0 8 0.441174 14 43 0 8 0.569042 14 44 0 8 0.60617 14 45 0 8 0.440618 14 46 0 8 0.489509 14 47 0 8 0.629532 14 48 0 8 0.748626 14 49 0 8 0.717513 14 50 0 8 0.602424 14 55 0 8 0.432417 14 58 0 8 0.772087 14 61 0 8 0.699906 14 62 0 8 0.675227 14 65 0 8 0.458553 15 25 0 8 0.672442 15 27 0 8 0.449286 15 28 0 8 0.709759 15 29 0 8 0.468158 15 30 0 8 0.612167 15 34 0 8 0.52016 15 36 0 8 0.494548 15 37 0 8 0.543305 15 41 0 8 0.639102 15 42 0 8 0.473439 15 43 0 8 0.619919 15 44 0 8 0.664112 15 45 0 8 0.452608 15 46 0 8 0.503134 15 47 0 8 0.679614 15 48 0 8 0.808031 15 49 0 8 0.779251 15 50 0 8 0.666894 15 55 0 8 0.438936 15 58 0 8 0.82465 15 61 0 8 0.743502 15 62 0 8 0.75875 15 65 0 8 0.471872 15 67 0 8 0.443473 16 25 0 8 0.811865 16 27 0 8 0.598925 16 28 0 8 0.795283 16 29 0 8 0.560729 16 30 0 8 0.686211 16 31 0 8 0.459352 16 34 0 8 0.609261 16 36 0 8 0.589849 16 37 0 8 0.630753 16 39 0 8 0.429344 16 40 0 8 0.433251 16 41 0 8 0.722372 16 42 0 8 0.55158 16 43 0 8 0.697639 16 44 0 8 0.734763 16 45 0 8 0.515072 16 46 0 8 0.588939 16 47 0 8 0.752317 16 48 0 8 0.849964 16 49 0 8 0.815331 16 50 0 8 0.709109 16 55 0 8 0.504386 16 57 0 8 0.471767 16 58 0 8 0.846914 16 61 0 8 0.770222 16 62 0 8 0.786909 16 65 0 8 0.555249 16 67 0 8 0.529092 16 71 0 8 0.458115 17 27 0 8 0.537588 17 28 0 8 0.670984 17 29 0 8 0.477744 17 30 0 8 0.577243 17 31 0 8 0.436448 17 34 0 8 0.52407 17 36 0 8 0.503893 17 37 0 8 0.514833 17 41 0 8 0.562276 17 42 0 8 0.435771 17 43 0 8 0.543239 17 44 0 8 0.55755 17 45 0 8 0.475092 17 46 0 8 0.524898 17 47 0 8 0.609879 17 48 0 8 0.682028 17 49 0 8 0.629532 17 50 0 8 0.542095 17 55 0 8 0.474012 17 57 0 8 0.452645 17 58 0 8 0.703335 17 61 0 8 0.658394 17 62 0 8 0.559794 17 65 0 8 0.50295 17 67 0 8 0.433644 18 27 0 8 0.51903 18 28 0 8 0.695398 18 29 0 8 0.474032 18 30 0 8 0.553963 18 34 0 8 0.468843 18 36 0 8 0.451739 18 37 0 8 0.481135 18 41 0 8 0.557348 18 43 0 8 0.549909 18 44 0 8 0.587203 18 45 0 8 0.431622 18 46 0 8 0.489624 18 47 0 8 0.616886 18 48 0 8 0.748635 18 49 0 8 0.699054 18 50 0 8 0.572823 18 58 0 8 0.701389 18 61 0 8 0.625197 18 62 0 8 0.594671 19 28 0 8 0.821611 19 29 0 8 0.586127 19 30 0 8 0.65242 19 34 0 8 0.565789 19 36 0 8 0.553211 19 37 0 8 0.606446 19 41 0 8 0.707314 19 42 0 8 0.554893 19 43 0 8 0.695209 19 44 0 8 0.739851 19 45 0 8 0.508419 19 46 0 8 0.576848 19 47 0 8 0.743272 19 48 0 8 0.862217 19 49 0 8 0.82636 19 50 0 8 0.711706 19 55 0 8 0.463523 19 58 0 8 0.79259 19 61 0 8 0.690584 19 62 0 8 0.718677 19 65 0 8 0.444662 19 67 0 8 0.488009 20 29 0 8 0.657978 20 30 0 8 0.705595 20 31 0 8 0.516308 20 34 0 8 0.686083 20 36 0 8 0.689042 20 37 0 8 0.712664 20 38 0 8 0.471492 20 39 0 8 0.570546 20 40 0 8 0.556376 20 41 0 8 0.779482 20 42 0 8 0.646847 20 43 0 8 0.737278 20 44 0 8 0.773298 20 45 0 8 0.587146 20 46 0 8 0.664659 20 47 0 8 0.747604 20 48 0 8 0.820666 20 49 0 8 0.785048 20 50 0 8 0.69041 20 54 0 8 0.501637 20 55 0 8 0.582175 20 57 0 8 0.556267 20 58 0 8 0.743479 20 61 0 8 0.670968 20 62 0 8 0.656248 20 65 0 8 0.614717 20 67 0 8 0.607958 20 71 0 8 0.557395 23 41 0 8 0.433723 23 43 0 8 0.432928 23 44 0 8 0.434547 23 46 0 8 0.460029 23 47 0 8 0.461566 23 48 0 8 0.500653 23 49 0 8 0.437483 23 50 0 8 0.433579 24 45 0 8 0.439428 24 51 0 8 0.47046 25 41 0 8 0.507418 25 42 0 8 0.486659 25 43 0 8 0.578867 25 44 0 8 0.644762 25 45 0 8 0.587567 25 46 0 8 0.655778 25 47 0 8 0.666086 25 48 0 8 0.742019 25 49 0 8 0.652937 25 50 0 8 0.597094 25 51 0 8 0.485642 26 41 0 8 0.450009 26 42 0 8 0.476465 26 43 0 8 0.567972 26 44 0 8 0.637282 26 45 0 8 0.733385 26 46 0 8 0.751014 26 47 0 8 0.676004 26 48 0 8 0.613791 26 49 0 8 0.513661 26 50 0 8 0.542236 26 51 0 8 0.526933 27 36 0 8 0.531275 27 37 0 8 0.530209 27 40 0 8 0.47754 27 41 0 8 0.603536 27 42 0 8 0.632213 27 43 0 8 0.725915 27 44 0 8 0.780908 27 45 0 8 0.800962 27 46 0 8 0.850162 27 47 0 8 0.850836 27 48 0 8 0.874658 27 49 0 8 0.818933 27 50 0 8 0.794719 27 51 0 8 0.634377 27 67 0 8 0.521261 28 37 0 8 0.805719 28 38 0 8 0.638943 28 39 0 8 0.596677 28 40 0 8 0.647457 28 41 0 8 0.797211 28 42 0 8 0.794689 28 43 0 8 0.864999 28 44 0 8 0.887161 28 45 0 8 0.858829 28 46 0 8 0.908073 28 47 0 8 0.932143 28 48 0 8 0.958466 28 49 0 8 0.936602 28 50 0 8 0.897152 28 51 0 8 0.678749 28 55 0 8 0.508162 28 57 0 8 0.434191 28 58 0 8 0.615186 28 61 0 8 0.562117 28 62 0 8 0.471737 28 67 0 8 0.567834 28 71 0 8 0.526976 28 72 0 8 0.442753 29 38 0 8 0.661069 29 39 0 8 0.605264 29 40 0 8 0.626935 29 41 0 8 0.761036 29 42 0 8 0.777158 29 43 0 8 0.841646 29 44 0 8 0.863878 29 45 0 8 0.873777 29 46 0 8 0.917427 29 47 0 8 0.932371 29 48 0 8 0.948509 29 49 0 8 0.910731 29 50 0 8 0.861484 29 51 0 8 0.679774 29 55 0 8 0.434833 29 58 0 8 0.504609 29 61 0 8 0.477291 29 67 0 8 0.43339 29 71 0 8 0.480108 30 39 0 8 0.737857 30 40 0 8 0.716722 30 41 0 8 0.85623 30 42 0 8 0.835819 30 43 0 8 0.890507 30 44 0 8 0.912934 30 45 0 8 0.881139 30 46 0 8 0.92227 30 47 0 8 0.948723 30 48 0 8 0.971856 30 49 0 8 0.956672 30 50 0 8 0.913368 30 51 0 8 0.698442 30 54 0 8 0.580558 30 55 0 8 0.644006 30 57 0 8 0.508948 30 58 0 8 0.775373 30 61 0 8 0.69865 30 62 0 8 0.552824 30 67 0 8 0.451884 30 71 0 8 0.605661 30 72 0 8 0.449958 31 40 0 8 0.689486 31 41 0 8 0.801177 31 42 0 8 0.778313 31 43 0 8 0.809815 31 44 0 8 0.84077 31 45 0 8 0.842715 31 46 0 8 0.895486 31 47 0 8 0.902035 31 48 0 8 0.90807 31 49 0 8 0.879727 31 50 0 8 0.851866 31 51 0 8 0.741492 31 52 0 8 0.453336 31 54 0 8 0.618026 31 55 0 8 0.571364 31 57 0 8 0.507634 31 58 0 8 0.683761 31 61 0 8 0.608048 31 71 0 8 0.55444 31 72 0 8 0.431543 32 41 0 8 0.747804 32 42 0 8 0.728673 32 43 0 8 0.750304 32 44 0 8 0.777675 32 45 0 8 0.82657 32 46 0 8 0.878556 32 47 0 8 0.860494 32 48 0 8 0.834535 32 49 0 8 0.811557 32 50 0 8 0.836916 32 51 0 8 0.809142 32 52 0 8 0.577579 32 54 0 8 0.589036 32 55 0 8 0.497839 32 57 0 8 0.486235 32 58 0 8 0.479547 32 71 0 8 0.49373 33 42 0 8 0.606739 33 43 0 8 0.638768 33 44 0 8 0.662073 33 45 0 8 0.726498 33 46 0 8 0.777076 33 47 0 8 0.754057 33 48 0 8 0.74747 33 49 0 8 0.735712 33 50 0 8 0.756197 33 51 0 8 0.74139 33 52 0 8 0.546594 33 54 0 8 0.49846 33 71 0 8 0.437637 34 43 0 8 0.682966 34 44 0 8 0.717805 34 45 0 8 0.657363 34 46 0 8 0.720797 34 47 0 8 0.759753 34 48 0 8 0.830308 34 49 0 8 0.808834 34 50 0 8 0.770404 34 51 0 8 0.641741 34 52 0 8 0.445761 34 54 0 8 0.539668 34 55 0 8 0.520997 34 57 0 8 0.487629 34 58 0 8 0.664866 34 61 0 8 0.59495 34 71 0 8 0.503546 35 44 0 8 0.665995 35 45 0 8 0.65936 35 46 0 8 0.710146 35 47 0 8 0.716248 35 48 0 8 0.743011 35 49 0 8 0.732272 35 50 0 8 0.69731 35 51 0 8 0.62612 35 52 0 8 0.432967 35 54 0 8 0.522857 35 55 0 8 0.446308 35 57 0 8 0.445674 35 58 0 8 0.44054 35 71 0 8 0.465343 36 45 0 8 0.681421 36 46 0 8 0.749598 36 47 0 8 0.789195 36 48 0 8 0.848263 36 49 0 8 0.817428 36 50 0 8 0.752101 36 51 0 8 0.594521 36 54 0 8 0.535795 36 55 0 8 0.511392 36 57 0 8 0.474547 36 58 0 8 0.648237 36 61 0 8 0.591912 36 71 0 8 0.504262 37 46 0 8 0.790398 37 47 0 8 0.83553 37 48 0 8 0.889336 37 49 0 8 0.858147 37 50 0 8 0.785322 37 51 0 8 0.587837 37 54 0 8 0.585841 37 55 0 8 0.599388 37 57 0 8 0.548569 37 58 0 8 0.754779 37 59 0 8 0.428604 37 61 0 8 0.679804 37 62 0 8 0.532961 37 71 0 8 0.555547 37 72 0 8 0.434391 38 47 0 8 0.751649 38 48 0 8 0.762339 38 49 0 8 0.718492 38 50 0 8 0.683791 38 51 0 8 0.614187 38 52 0 8 0.433816 38 54 0 8 0.517728 38 55 0 8 0.482955 38 57 0 8 0.467634 38 58 0 8 0.523652 38 61 0 8 0.50182 38 71 0 8 0.465525 39 48 0 8 0.775201 39 49 0 8 0.738351 39 50 0 8 0.720091 39 51 0 8 0.666304 39 52 0 8 0.488823 39 54 0 8 0.517074 39 55 0 8 0.476413 39 57 0 8 0.467159 39 58 0 8 0.52179 39 61 0 8 0.489836 39 71 0 8 0.468676 40 49 0 8 0.794338 40 50 0 8 0.769635 40 51 0 8 0.694916 40 52 0 8 0.513993 40 54 0 8 0.512866 40 55 0 8 0.476678 40 57 0 8 0.463774 40 58 0 8 0.55315 40 61 0 8 0.505919 40 71 0 8 0.47385 41 50 0 8 0.889652 41 51 0 8 0.711164 41 52 0 8 0.515027 41 54 0 8 0.605527 41 55 0 8 0.614077 41 57 0 8 0.56478 41 58 0 8 0.82082 41 59 0 8 0.459548 41 61 0 8 0.720717 41 62 0 8 0.651782 41 67 0 8 0.479297 41 71 0 8 0.598354 41 72 0 8 0.46688 42 51 0 8 0.771824 42 52 0 8 0.581897 42 54 0 8 0.603539 42 55 0 8 0.589292 42 57 0 8 0.55339 42 58 0 8 0.781834 42 59 0 8 0.462292 42 61 0 8 0.696356 42 62 0 8 0.605297 42 67 0 8 0.47933 42 71 0 8 0.576032 42 72 0 8 0.474379 43 52 0 8 0.554964 43 54 0 8 0.585342 43 55 0 8 0.586553 43 57 0 8 0.536147 43 58 0 8 0.787757 43 59 0 8 0.460141 43 61 0 8 0.698379 43 62 0 8 0.628825 43 67 0 8 0.484976 43 71 0 8 0.578044 43 72 0 8 0.476756 44 54 0 8 0.59411 44 55 0 8 0.612988 44 57 0 8 0.559387 44 58 0 8 0.848408 44 59 0 8 0.507764 44 61 0 8 0.762509 44 62 0 8 0.721584 44 64 0 8 0.429952 44 65 0 8 0.444199 44 67 0 8 0.547361 44 71 0 8 0.590536 44 72 0 8 0.471867 45 54 0 8 0.550754 45 55 0 8 0.552264 45 57 0 8 0.530028 45 58 0 8 0.675984 45 59 0 8 0.472957 45 61 0 8 0.641338 45 62 0 8 0.513586 45 64 0 8 0.456245 45 65 0 8 0.462891 45 67 0 8 0.529384 45 69 0 8 0.462363 45 71 0 8 0.537355 45 72 0 8 0.485911 46 55 0 8 0.579228 46 57 0 8 0.539175 46 58 0 8 0.689672 46 59 0 8 0.48134 46 61 0 8 0.64888 46 62 0 8 0.517991 46 67 0 8 0.551464 46 68 0 8 0.446735 46 69 0 8 0.538565 46 70 0 8 0.453403 46 71 0 8 0.568036 46 72 0 8 0.51682 47 57 0 8 0.574179 47 58 0 8 0.852081 47 59 0 8 0.53972 47 61 0 8 0.778333 47 62 0 8 0.734721 47 64 0 8 0.461895 47 65 0 8 0.452164 47 67 0 8 0.631045 47 68 0 8 0.43663 47 69 0 8 0.553395 47 70 0 8 0.463932 47 71 0 8 0.651967 47 72 0 8 0.545929 48 57 0 8 0.672923 48 58 0 8 0.931636 48 59 0 8 0.635318 48 61 0 8 0.869864 48 62 0 8 0.865319 48 64 0 8 0.508053 48 65 0 8 0.54105 48 67 0 8 0.740345 48 68 0 8 0.45539 48 69 0 8 0.59377 48 70 0 8 0.459465 48 71 0 8 0.746452 48 72 0 8 0.593264 49 58 0 8 0.927785 49 59 0 8 0.574223 49 61 0 8 0.853477 49 62 0 8 0.842241 49 65 0 8 0.505331 49 67 0 8 0.672006 49 69 0 8 0.565814 49 70 0 8 0.469676 49 71 0 8 0.742922 49 72 0 8 0.573148 50 59 0 8 0.650318 50 61 0 8 0.872357 50 62 0 8 0.828929 50 64 0 8 0.466648 50 65 0 8 0.567525 50 67 0 8 0.655681 50 69 0 8 0.551509 50 70 0 8 0.470562 50 71 0 8 0.738107 50 72 0 8 0.5695 51 61 0 8 0.495255 51 71 0 8 0.499963 55 64 0 8 0.428471 55 65 0 8 0.548421 55 67 0 8 0.479547 55 69 0 8 0.446978 55 71 0 8 0.6356 55 72 0 8 0.46662 58 67 0 8 0.66215 58 69 0 8 0.50491 58 71 0 8 0.697081 58 72 0 8 0.450761 59 69 0 8 0.63598 59 70 0 8 0.447008 59 71 0 8 0.728608 59 72 0 8 0.553547 61 71 0 8 0.548513 62 71 0 8 0.80878 62 72 0 8 0.58121 63 72 0 8 0.470646 END