Best Alignments for T0348

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1pft/T0348-1pft-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pft/T0348-1pft-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.0408e-032.92e-06 1pft g.41.3.1
1dl6A/T0348-1dl6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dl6A/T0348-1dl6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.5689e-013.50e-04 1dl6A g.41.3.1
1vk6A/T0348-1vk6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vk6A/T0348-1vk6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.8129e-019.83e-06 d.113.1.4
d.113.1.4
2ct7A/T0348-2ct7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ct7A/T0348-2ct7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2770e+008.34e-02
1s72Z/T0348-1s72Z-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1s72Z/T0348-1s72Z-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2540e+004.23e-02 g.41.8.1
1vqoZ/T0348-1vqoZ-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vqoZ/T0348-1vqoZ-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3770e+002.22e-02
1vd4A/T0348-1vd4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vd4A/T0348-1vd4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6202e+003.62e-03
1bc8C/T0348-1bc8C-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1bc8C/T0348-1bc8C-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4896e+002.59e-03 1awcA a.4.5.21
1odhA/T0348-1odhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1odhA/T0348-1odhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6327e+005.39e-01 d.239.1.1
1far/T0348-1far-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1far/T0348-1far-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.5652e+001.16e-01 1far g.49.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001