# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ct7A 86 1.44e-01 1vqoZ 83 2.48e-01 1rlyA 60 8.43e-01 g.41.3.1 104988 1vk6A 269 9.16e-01 d.113.1.4,d.113.1.4 100851,100852 1vckA 115 1.21e+00 1vd4A 62 1.32e+00 1odhA 174 1.39e+00 d.239.1.1 86850 1jm1A 204 1.47e+00 b.33.1.1 71745 1kmtA 141 1.73e+00 b.1.18.8 77442 1qxfA 66 2.17e+00 g.41.8.4 96527 1ur6B 52 2.24e+00 g.44.1.1 99812 1ee8A 266 2.34e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1l1oC 181 2.47e+00 b.40.4.3 73480 1d0qA 103 2.59e+00 1d0qA g.41.3.2 45208 2fqpA 97 2.98e+00 1y9wA 140 3.17e+00 1ww8A 439 3.33e+00 1yk4A 52 3.46e+00 1wd2A 60 3.77e+00 g.44.1.1 109232 1mswD 883 3.87e+00 e.8.1.3 79427 1neeA 138 4.24e+00 d.241.1.1,g.59.1.1 91841,91842 1nykA 165 4.45e+00 b.33.1.1 86408 1ptq 50 4.66e+00 1ptq g.49.1.1 45349 1x75A 132 4.68e+00 1w9aA 147 5.01e+00 1wrvA 308 5.53e+00 1s9rA 410 6.53e+00 d.126.1.4 98758 1u8bA 133 8.13e+00 1k8kA 418 8.39e+00 c.55.1.1,c.55.1.1 68305,68306 1upiA 225 8.71e+00 b.82.1.1 99757 1iro 54 8.93e+00 1rb9 g.41.5.1 45223 1wxiA 275 9.10e+00 2aq6A 147 1.03e+01 2awpA 198 1.04e+01 1ypvA 313 1.04e+01 1k7cA 233 1.17e+01 c.23.10.4 68267 1wijA 140 1.19e+01 1mr1C 99 1.29e+01 d.217.1.2 79420 1dxgA 36 1.30e+01 1dxgA g.41.5.2 45247 1wjvA 79 1.31e+01 1hyeA 313 1.38e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1r5mA 425 1.44e+01 1inp 400 1.44e+01 1inp e.7.1.1 42972 1qwtA 255 1.44e+01 b.26.1.3 96501 1rb9 53 1.46e+01 1rb9 g.41.5.1 45214 2cy5A 140 1.47e+01 1k7hA 476 1.55e+01 c.76.1.1 72101 1iyeA 309 1.66e+01 e.17.1.1 83786 2sak 121 1.69e+01 2sak d.15.5.1 37711 1ogdA 131 1.71e+01 c.133.1.1 92893 2bwfA 77 1.86e+01 1yovA 537 1.87e+01 1pfvA 551 1.90e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1x31D 99 1.93e+01 1wfeA 86 1.99e+01 1cojA 212 2.00e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1dgfA 497 2.04e+01 1cf9A e.5.1.1 42782 1fp0A 88 2.05e+01 1fp0A g.50.1.2 45361 2a1rA 430 2.06e+01 2bx9A 53 2.10e+01 1lm5A 214 2.11e+01 d.211.2.1 74029 1p5vA 235 2.23e+01 b.1.11.1,b.7.2.1 87812,87813 2au3A 407 2.37e+01 1rfs 139 2.39e+01 1rfs b.33.1.1 24434 1dl0A 37 2.39e+01 1dl0A g.3.6.2 44112 1weoA 93 2.41e+01 2avuE 192 2.42e+01 1vhqA 232 2.43e+01 c.23.16.2 100696 1qz5A 375 2.51e+01 c.55.1.1,c.55.1.1 96614,96615 1kyqA 274 2.55e+01 c.2.1.11,e.37.1.1 73281,73282 1t0bA 252 2.55e+01 c.23.16.6 106199 1r6lA 239 2.68e+01 d.14.1.4,d.101.1.1 97153,97154 1u24A 337 2.71e+01 1wjpA 107 2.72e+01 1rdg 53 2.73e+01 1rb9 g.41.5.1 45221 1xd3A 230 2.80e+01 1pk6C 129 2.88e+01 b.22.1.1 94803 1twfL 70 2.88e+01 1brfA 53 2.99e+01 1rb9 g.41.5.1 45236 1vqoC 246 3.00e+01 1zyoA 191 3.04e+01 1a78A 134 3.05e+01 1c1lA b.29.1.3 24212 1vq0A 302 3.06e+01 1lvoA 302 3.07e+01 b.47.1.4 74284 1z6uA 150 3.10e+01 1l8dA 112 3.16e+01 h.4.12.1 73687 1m22A 503 3.38e+01 c.117.1.1 78464 1afp 51 3.51e+01 1afp g.26.1.1 44947 1hdlA 55 3.53e+01 g.68.1.2 65808 2g8yA 385 3.63e+01 1mea 28 3.65e+01 g.41.1.1 45176 1twfI 122 3.67e+01 1n6zA 105 3.83e+01 d.263.1.1 85369 1w8kA 447 3.90e+01 1ifqA 138 3.91e+01 1ifqA d.110.4.1 62350 1lv3A 68 3.93e+01 g.39.1.9 78231 1hcnA 92 3.96e+01 1hcnA g.17.1.4 44809 1zzpA 130 3.96e+01 1i76A 163 4.00e+01 1hfc d.92.1.11 61877 1cv8 174 4.02e+01 1cv8 d.3.1.1 37089 1rutX 188 4.05e+01 7taa 478 4.05e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1q35A 320 4.13e+01 c.94.1.1 95661 2b5iD 217 4.13e+01 1tz9A 367 4.13e+01 c.1.15.6 107466 1utyA 187 4.19e+01 b.147.1.1 108036 1pk6B 132 4.21e+01 b.22.1.1 94802 2fxuA 375 4.21e+01 1o91A 178 4.24e+01 b.22.1.1 92656 1ji1A 637 4.27e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1uh4A 637 4.28e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1ty9A 222 4.30e+01 1usyA 275 4.32e+01 1q68B 29 4.36e+01 j.108.1.1 95963 2ahuA 531 4.41e+01 1qtwA 285 4.49e+01 1qumA c.1.15.1 29392 2fiyA 309 4.63e+01 1m2tB 263 4.68e+01 b.42.2.1,b.42.2.1 84762,84763 1zin 217 4.73e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1v6pA 62 4.76e+01 1zkkA 167 4.98e+01 1vetA 124 4.99e+01 d.110.7.1 108553 2sicI 107 5.09e+01 3ssi d.84.1.1 40031 1aa6 715 5.17e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1pk6A 133 5.20e+01 b.22.1.1 94801 2aq4A 434 5.27e+01 2c43A 323 5.35e+01 1zvnA 99 5.35e+01 2cklB 165 5.39e+01 1guiA 155 5.40e+01 b.18.1.14 76351 1l1dA 152 5.41e+01 b.88.1.3 73452 1xiwA 105 5.43e+01 1hw5A 210 5.45e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 2fqaA 27 5.68e+01 1b77A 228 5.73e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1o12A 376 5.86e+01 b.92.1.5,c.1.9.10 80758,80759 1t2dA 322 5.97e+01 c.2.1.5,d.162.1.1 99084,99085 1vrmA 325 5.98e+01 830cA 168 6.06e+01 1ck7A d.92.1.11 40400 1y88A 199 6.10e+01 6rxn 46 6.10e+01 1rb9 g.41.5.1 45222 1q33A 292 6.20e+01 d.113.1.1 95657 3daaA 277 6.68e+01 1daaA e.17.1.1 43272 1z4rA 168 6.73e+01 1jgsA 138 6.84e+01 a.4.5.28 66683 1vfyA 73 6.86e+01 1vfyA g.50.1.1 45357 1ww9A 392 6.91e+01 1u3eM 174 6.94e+01 d.4.1.3,d.285.1.1 107640,107641 1k0mA 241 6.96e+01 a.45.1.1,c.47.1.5 67949,67950 1gvzA 237 6.97e+01 b.47.1.2 76360 2ctdA 96 7.02e+01 2fe5A 94 7.06e+01 1xi7A 61 7.06e+01 1se7A 83 7.12e+01 1ew4A 106 7.20e+01 1ew4A d.82.2.1 40023 1v54F 98 7.24e+01 g.41.5.3 100327 1gpr 162 7.29e+01 1gpr b.84.3.1 28267 1wflA 74 7.29e+01 1qs1A 462 7.36e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1yaxA 153 7.41e+01 1bnb 38 7.41e+01 1bnb g.9.1.1 44592 1tr9A 341 7.43e+01 2a20A 62 7.47e+01 1u79A 129 7.49e+01 d.26.1.1 107714 2airB 153 7.55e+01 1p32A 209 7.58e+01 1p32A d.25.1.1 38379 1w2lA 99 7.64e+01 1dvpA 220 7.66e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1x13A 401 7.66e+01 2cxkA 95 7.78e+01 1rgxA 114 7.80e+01 g.77.1.1 104932 1xakA 83 7.84e+01 1vmhA 144 7.93e+01 1qqqA 264 7.98e+01 1bkpA d.117.1.1 40931 1niyA 36 8.07e+01 g.3.6.2 80542 1vziA 126 8.10e+01 b.1.13.1,g.41.5.2 108967,108968 1gvjA 146 8.12e+01 a.4.5.21 90525 1zx2A 147 8.29e+01 2b9dA 52 8.52e+01 2cklA 108 8.82e+01 2an1A 292 8.84e+01 1o7eA 276 8.89e+01 e.3.1.1 92622 2bhvA 246 8.95e+01