# List of top-scoring protein chains for t06-100-30-o_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fqpA 97 2.17e-01 1vqoZ 83 3.51e-01 2ct7A 86 4.65e-01 1ypvA 313 6.41e-01 1ur6B 52 8.13e-01 g.44.1.1 99812 1ifqA 138 9.10e-01 1ifqA d.110.4.1 62350 1kmtA 141 9.80e-01 b.1.18.8 77442 1odhA 174 1.05e+00 d.239.1.1 86850 1ee8A 266 1.10e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1w9aA 147 1.16e+00 1jm1A 204 1.47e+00 b.33.1.1 71745 2g8yA 385 1.55e+00 1sur 215 1.55e+00 1sur c.26.2.2 31620 1rlyA 60 1.66e+00 g.41.3.1 104988 1k8kA 418 1.76e+00 c.55.1.1,c.55.1.1 68305,68306 1wd2A 60 1.83e+00 g.44.1.1 109232 2aq6A 147 1.96e+00 1vd4A 62 2.07e+00 1p5vA 235 2.15e+00 b.1.11.1,b.7.2.1 87812,87813 1wrvA 308 2.23e+00 1l1oC 181 2.42e+00 b.40.4.3 73480 1wjvA 79 2.56e+00 1qtwA 285 2.77e+00 1qumA c.1.15.1 29392 1lvoA 302 3.29e+00 b.47.1.4 74284 2cklB 165 3.31e+00 1qxfA 66 3.40e+00 g.41.8.4 96527 1y9wA 140 3.44e+00 1zd9A 188 3.83e+00 1lv3A 68 3.86e+00 g.39.1.9 78231 1rutX 188 4.16e+00 1ptq 50 4.34e+00 1ptq g.49.1.1 45349 1inp 400 4.59e+00 1inp e.7.1.1 42972 2cxvA 219 4.97e+00 1vk6A 269 4.97e+00 d.113.1.4,d.113.1.4 100851,100852 1tr9A 341 5.05e+00 2avuE 192 5.31e+00 2g8oA 264 5.49e+00 1vckA 115 5.61e+00 2as9A 210 5.75e+00 1wfeA 86 5.95e+00 2cy5A 140 5.95e+00 1xtqA 177 6.21e+00 1uk8A 282 6.36e+00 c.69.1.10 107907 1dxgA 36 6.38e+00 1dxgA g.41.5.2 45247 1xk5A 204 6.54e+00 2awpA 198 6.57e+00 2g8mA 264 7.12e+00 1y88A 199 7.54e+00 1z6uA 150 7.56e+00 2aq4A 434 7.66e+00 3daaA 277 7.86e+00 1daaA e.17.1.1 43272 2aq5A 402 8.04e+00 1qqqA 264 8.47e+00 1bkpA d.117.1.1 40931 1r6lA 239 8.58e+00 d.14.1.4,d.101.1.1 97153,97154 1x31D 99 8.68e+00 1q35A 320 9.05e+00 c.94.1.1 95661 1yk4A 52 9.09e+00 1hyeA 313 9.16e+00 2cmd c.2.1.5,d.162.1.1 61400,61401 1umwA 237 9.29e+00 d.223.1.2,d.223.1.2 99631,99632 1u79A 129 9.69e+00 d.26.1.1 107714 1k7cA 233 1.02e+01 c.23.10.4 68267 1r5mA 425 1.02e+01 1zkkA 167 1.03e+01 1pfvA 551 1.03e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1fp0A 88 1.09e+01 1fp0A g.50.1.2 45361 1cojA 212 1.09e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1rb9 53 1.10e+01 1rb9 g.41.5.1 45214 1utyA 187 1.11e+01 b.147.1.1 108036 1p6oA 161 1.12e+01 c.97.1.2 94185 1a78A 134 1.15e+01 1c1lA b.29.1.3 24212 1ww8A 439 1.19e+01 1wijA 140 1.20e+01 1u69A 163 1.22e+01 d.32.1.7 107699 1vziA 126 1.23e+01 b.1.13.1,g.41.5.2 108967,108968 1lm5A 214 1.24e+01 d.211.2.1 74029 1zzpA 130 1.25e+01 1wxiA 275 1.26e+01 1xiwA 105 1.33e+01 1wjpA 107 1.35e+01 2bwfA 77 1.39e+01 1twfL 70 1.39e+01 1rdg 53 1.43e+01 1rb9 g.41.5.1 45221 1yovA 537 1.43e+01 1iyeA 309 1.43e+01 e.17.1.1 83786 2sak 121 1.46e+01 2sak d.15.5.1 37711 1ti6B 274 1.52e+01 b.3.5.1,d.58.1.5 106976,106977 1gpr 162 1.56e+01 1gpr b.84.3.1 28267 1m4uA 206 1.58e+01 g.17.1.7 78625 1z4vA 532 1.68e+01 1m22A 503 1.70e+01 c.117.1.1 78464 1m3qA 317 1.73e+01 a.96.1.3,d.129.1.2 91184,91185 1weoA 93 1.77e+01 1yopA 83 1.77e+01 2a1rA 430 1.84e+01 1q68B 29 1.88e+01 j.108.1.1 95963 1u8vA 490 1.89e+01 1sefA 274 1.89e+01 b.82.1.11 105452 1m2tB 263 1.91e+01 b.42.2.1,b.42.2.1 84762,84763 1uv4A 293 1.92e+01 1dgfA 497 1.93e+01 1cf9A e.5.1.1 42782 1xakA 83 1.94e+01 1brfA 53 1.97e+01 1rb9 g.41.5.1 45236 2bvcA 486 1.99e+01 2cwsA 237 1.99e+01 1gmyA 261 2.01e+01 d.3.1.1 76236 1l1dA 152 2.01e+01 b.88.1.3 73452 2a20A 62 2.02e+01 1woyA 500 2.03e+01 2bx9A 53 2.06e+01 2fclA 169 2.07e+01 1n6zA 105 2.10e+01 d.263.1.1 85369 1d0qA 103 2.12e+01 1d0qA g.41.3.2 45208 1h2wA 710 2.28e+01 b.69.7.1,c.69.1.4 76596,76597 1mea 28 2.32e+01 g.41.1.1 45176 1mswD 883 2.35e+01 e.8.1.3 79427 1zyoA 191 2.38e+01 1fiqB 350 2.43e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 1ty9A 222 2.46e+01 1w2lA 99 2.48e+01 1h3nA 878 2.50e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1vphA 149 2.53e+01 1ihoA 283 2.54e+01 1ihoA c.26.1.4 62390 1vq0A 302 2.55e+01 1nykA 165 2.64e+01 b.33.1.1 86408 1qz5A 375 2.71e+01 c.55.1.1,c.55.1.1 96614,96615 1d3bA 75 2.71e+01 1d3bA b.38.1.1 24798 6rxn 46 2.72e+01 1rb9 g.41.5.1 45222 1vqoC 246 2.77e+01 1h4rA 314 2.81e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1kmqA 184 2.88e+01 c.37.1.8 84412 1t2dA 322 2.91e+01 c.2.1.5,d.162.1.1 99084,99085 1afp 51 2.93e+01 1afp g.26.1.1 44947 1eybA 471 2.94e+01 1ey2A b.82.1.4 28115 1llmC 88 2.97e+01 g.37.1.1,g.37.1.1 91059,91060 1ubkS 267 2.98e+01 e.19.1.1 88423 1yaxA 153 3.01e+01 2fqaA 27 3.01e+01 2cklA 108 3.04e+01 1rfs 139 3.05e+01 1rfs b.33.1.1 24434 1m2kA 249 3.08e+01 c.31.1.5 84754 2cxkA 95 3.14e+01 1hdlA 55 3.16e+01 g.68.1.2 65808 1ayoA 130 3.19e+01 1ayoA b.2.4.1 22431 1cv8 174 3.29e+01 1cv8 d.3.1.1 37089 1k7hA 476 3.31e+01 c.76.1.1 72101 1dxsA 80 3.35e+01 1cokA a.60.1.2 17944 1p32A 209 3.36e+01 1p32A d.25.1.1 38379 1suuA 312 3.37e+01 b.68.10.1 99006 1ywzA 175 3.56e+01 1oxdA 227 3.74e+01 d.22.1.1 93687 4eugA 229 3.75e+01 3eugA c.18.1.1 31019 2fxuA 375 3.77e+01 2fiyA 309 3.78e+01 1dpgA 485 3.78e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1eq2A 310 3.81e+01 1eq2A c.2.1.2 29814 1exqA 154 3.84e+01 1b9dA c.55.3.2 33646 2an1A 292 3.85e+01 2etxA 209 3.86e+01 2erxA 172 3.88e+01 2bbkL 125 3.88e+01 2bbkL g.21.1.1 44882 1oi6A 205 3.90e+01 b.82.1.1 103940 1e19A 314 3.90e+01 1b7bA c.73.1.1 34967 1g38A 393 3.93e+01 2admA c.66.1.27 60235 1xhcA 367 3.94e+01 1nigA 152 3.96e+01 a.25.2.1 85740 1x75A 132 3.97e+01 1o12A 376 4.00e+01 b.92.1.5,c.1.9.10 80758,80759 1iro 54 4.00e+01 1rb9 g.41.5.1 45223 1kyqA 274 4.04e+01 c.2.1.11,e.37.1.1 73281,73282 1lwdA 413 4.09e+01 c.77.1.1 78265 1guiA 155 4.12e+01 b.18.1.14 76351 1bs0A 384 4.15e+01 1bs0A c.67.1.4 34490 2g09A 297 4.16e+01 1olzA 663 4.17e+01 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2bt6A 108 4.17e+01 2ctdA 96 4.17e+01 1wc2A 181 4.19e+01 1vetA 124 4.21e+01 d.110.7.1 108553 1k0mA 241 4.21e+01 a.45.1.1,c.47.1.5 67949,67950 1fl2A 310 4.22e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1o9iA 266 4.26e+01 a.25.1.3 92671 1l8dA 112 4.26e+01 h.4.12.1 73687 2a97A 439 4.28e+01 1gvzA 237 4.31e+01 b.47.1.2 76360 1g8aA 227 4.32e+01 c.66.1.3 90506 1eajA 126 4.39e+01 1f5wA b.1.1.1 59401 1jfrA 262 4.43e+01 1jfrA c.69.1.16 34724 1fvkA 189 4.46e+01 1fvkA c.47.1.13 90351 7taa 478 4.49e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1r8nA 185 4.51e+01 b.42.4.1 104851 1cqmA 101 4.53e+01 1ris d.58.14.1 39321 1wba 175 4.55e+01 1wba b.42.4.1 25591 1iqzA 81 4.58e+01 d.58.1.4 66281 1zin 217 4.63e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1itbB 315 4.71e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1hq0A 295 4.78e+01 1hzgA d.194.1.1 61122 1z60A 59 4.79e+01 1oyjA 231 4.80e+01 a.45.1.1,c.47.1.5 87597,87598 1neeA 138 4.81e+01 d.241.1.1,g.59.1.1 91841,91842 1w8sA 263 4.84e+01 1dl0A 37 4.85e+01 1dl0A g.3.6.2 44112 1wraA 308 5.09e+01 1xd3A 230 5.10e+01 1i1qA 520 5.11e+01 1qdlA d.161.1.1 61543 1kopA 223 5.15e+01 2cba b.74.1.1 27966 1vekA 84 5.17e+01 1tz9A 367 5.30e+01 c.1.15.6 107466 1vrmA 325 5.37e+01 1m07A 111 5.43e+01 d.5.1.1 78328 2a23A 82 5.43e+01 1m1qA 91 5.44e+01 a.138.1.3 74419 2b5iD 217 5.46e+01 1hl2A 297 5.54e+01 c.1.10.1 83581 1qwtA 255 5.57e+01 b.26.1.3 96501 1wf3A 301 5.66e+01 1ew4A 106 5.71e+01 1ew4A d.82.2.1 40023 1q33A 292 5.72e+01 d.113.1.1 95657 1hcnA 92 5.73e+01 1hcnA g.17.1.4 44809 1x6mA 196 5.74e+01 1oxxK 353 5.76e+01 b.40.6.3,c.37.1.12 93715,93716 1m5wA 243 5.80e+01 c.1.24.1 84836 2c1xA 456 5.83e+01 2bivA 243 5.83e+01 1b8oA 284 5.91e+01 1b8oA c.56.2.1 33762 1wflA 74 5.96e+01 1nox 205 5.98e+01 1nox d.90.1.1 40242 1xfkA 336 6.03e+01 1tqnA 486 6.16e+01 a.104.1.1 107238 1m0gA 30 6.24e+01 g.46.1.1 84743 1t1jA 125 6.26e+01 c.137.1.1 106249 1vmhA 144 6.27e+01 1upiA 225 6.33e+01 b.82.1.1 99757 1n67A 359 6.33e+01 b.2.3.4,b.2.3.4 85354,85355 1vdwA 254 6.36e+01 e.7.1.1 100569 2trxA 108 6.37e+01 1thx c.47.1.1 32719 2cszA 76 6.37e+01 1mr1C 99 6.40e+01 d.217.1.2 79420 2awkA 228 6.43e+01 1wr8A 231 6.53e+01 1uzxA 169 6.57e+01 d.20.1.2 100238 1qjpA 171 6.59e+01 1bxwA f.4.1.1 43742 1ldjB 90 6.68e+01 g.44.1.1 73850 1g4mA 393 6.71e+01 b.1.18.11,b.1.18.11 65143,65144 1nepA 130 6.92e+01 b.1.18.7 80440 2bwkA 121 6.98e+01 1qd1A 325 7.01e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1rgxA 114 7.08e+01 g.77.1.1 104932 2bibA 547 7.10e+01 1xi7A 61 7.18e+01 1rc6A 261 7.33e+01 b.82.1.11 97287 1o7eA 276 7.36e+01 e.3.1.1 92622 1yphE 97 7.37e+01 1zboA 210 7.40e+01 1jofA 365 7.46e+01 b.69.10.1 71775 1z52A 470 7.48e+01 1vm9A 111 7.53e+01 b.33.1.1 108886 2fs3A 282 7.71e+01 1pkhA 204 7.76e+01 b.85.4.1 94832 1lr5A 163 7.77e+01 b.82.1.2 74215 1e7lA 157 7.82e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1sz2A 332 7.96e+01 1t0bA 252 8.02e+01 c.23.16.6 106199 1hw5A 210 8.03e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1g9pA 45 8.15e+01 g.3.6.2 65171 1vplA 256 8.19e+01 1extA 162 8.24e+01 1extA g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 1oeyA 83 8.25e+01 d.15.2.2 92800 1kkeA 210 8.26e+01 b.21.1.2,b.83.1.2 68669,68670 1wuiS 267 8.34e+01 2f8aA 208 8.37e+01 1cl4A 60 8.46e+01 1cl4A g.40.1.1 45171 1zud1 251 8.48e+01 1avwB 171 8.49e+01 1wba b.42.4.1 25599 2c4jA 218 8.56e+01 1u00A 227 8.59e+01 2cx1A 187 8.60e+01 1li4A 432 8.63e+01 c.2.1.4,c.23.12.3 84616,84617 1z4rA 168 8.65e+01 1umgA 362 8.68e+01 d.280.1.1 107956 1u8zA 168 8.86e+01 1ww9A 392 8.88e+01 1dvpA 220 8.93e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358