# List of top-scoring protein chains for t06-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1epwA 1290 9.12e-01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1to6A 371 1.48e+00 c.141.1.1 107170 1uteA 313 1.98e+00 1uteA d.159.1.1 42078 1eu1A 780 4.31e+00 1dmr b.52.2.2,c.81.1.1 26903,35311 1rc6A 261 4.87e+00 b.82.1.11 97287 2awpA 198 5.25e+00 1qopB 396 5.31e+00 2tysB c.79.1.1 35270 1wc2A 181 5.57e+00 1pixA 587 5.75e+00 c.14.1.4 94708 1yifA 533 7.84e+00 1ry6A 360 9.13e+00 c.37.1.9 98090 1j1lA 290 9.54e+00 b.82.1.12 90766 1kblA 873 9.95e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1wp5A 323 1.18e+01 1suuA 312 1.18e+01 b.68.10.1 99006 1m2oA 768 1.32e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1h09A 338 1.38e+01 b.109.1.1,c.1.8.8 83420,83421 1ylhA 560 1.56e+01 1ri6A 343 1.65e+01 b.69.11.1 97503 2as0A 396 1.67e+01 1zbpA 273 1.74e+01 2a6hC 1119 1.76e+01 1ktbA 405 1.80e+01 b.71.1.1,c.1.8.1 72960,72961 1r6vA 671 1.86e+01 1fmtA 314 1.94e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 2g8oA 264 1.96e+01 2cvxA 888 2.00e+01 1y9wA 140 2.01e+01 1k3iA 656 2.11e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2f4nA 273 2.12e+01 1w2wB 191 2.23e+01 1qg3A 195 2.36e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 1jb7A 495 2.37e+01 1otcA b.40.4.3,b.40.4.3,b.40.4.3 62836,62837,62838 1ms9A 648 2.40e+01 b.29.1.15,b.68.1.1 85088,85089 1q33A 292 2.51e+01 d.113.1.1 95657 1ku0A 388 2.60e+01 c.69.1.18 72994 1w9pA 433 2.61e+01 1c7sA 858 2.65e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1wyuA 438 2.74e+01 1fjhA 257 2.78e+01 1fjhB c.2.1.2 29870 1kdgA 546 2.82e+01 c.3.1.2,d.16.1.1 77337,77338 2cqsA 842 2.93e+01 1szqA 483 2.97e+01 e.44.1.1 99045 1u4gA 301 2.98e+01 d.92.1.2 107670 1hjsA 332 2.98e+01 c.1.8.3 83492 1ga6A 372 3.04e+01 1ga1A c.41.1.2 32556 1ncwL 219 3.14e+01 b.1.1.1,b.1.1.2 85557,85558 1kw3B 292 3.15e+01 d.32.1.3,d.32.1.3 77549,77550 1vckA 115 3.21e+01 2bwrA 401 3.25e+01 1xf1A 926 3.29e+01 1qtwA 285 3.31e+01 1qumA c.1.15.1 29392 1gppA 237 3.31e+01 b.86.1.2 76262 2aaoA 166 3.38e+01 1d7pM 159 3.50e+01 1cztA b.18.1.2 23718 1a9xA 1058 3.51e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1i78A 297 3.52e+01 f.4.4.1 66046 2fflA 756 3.58e+01 1tlyA 278 3.73e+01 f.4.6.1 107143 1w9aA 147 3.89e+01 1r17A 343 3.99e+01 b.2.3.4,b.2.3.4 96796,96797 1qksA 567 4.07e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1vprA 374 4.11e+01 2fv1A 377 4.12e+01 1r6fA 310 4.13e+01 e.46.1.1 97149 1k0mA 241 4.21e+01 a.45.1.1,c.47.1.5 67949,67950 1cs0A 1073 4.22e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1ks8A 433 4.27e+01 a.102.1.2 77519 1mswD 883 4.30e+01 e.8.1.3 79427 2scpA 174 4.32e+01 2scpA a.39.1.5 17256 1yliA 153 4.44e+01 2afwA 329 4.48e+01 1jjfA 268 4.52e+01 c.69.1.2 66765 1x8qA 184 4.52e+01 1jr7A 311 4.52e+01 b.82.2.3 63255 2bryA 497 4.61e+01 1jm1A 204 4.64e+01 b.33.1.1 71745 1m7sA 484 4.71e+01 e.5.1.1 74574 1k7iA 479 4.85e+01 b.80.7.1,d.92.1.6 77281,77282 1goiA 499 4.87e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 2bz6H 254 4.92e+01 1vqoZ 83 4.95e+01 1rgyA 360 5.00e+01 e.3.1.1 97456 2aq6A 147 5.01e+01 1u04A 771 5.01e+01 b.34.14.1,c.55.3.10 107539,107540 1wiwA 290 5.20e+01 1h12A 405 5.25e+01 a.102.1.2 83447 1z2kA 109 5.30e+01 1woyA 500 5.53e+01 1n67A 359 5.57e+01 b.2.3.4,b.2.3.4 85354,85355 1gk9B 557 5.60e+01 1jofA 365 5.61e+01 b.69.10.1 71775 1y42X 392 5.69e+01 2gdnA 267 5.77e+01 2fp8A 322 5.79e+01 1y791 680 5.85e+01 1ggzA 148 5.86e+01 a.39.1.5 70176 2ct7A 86 5.88e+01 1m3yA 413 5.95e+01 b.121.2.3,b.121.2.3 78579,78580 1lurA 339 5.96e+01 b.30.5.4 84717 2b5eA 504 5.98e+01 1n62B 809 5.98e+01 d.41.1.1,d.133.1.1 80092,80093 1vk6A 269 5.99e+01 d.113.1.4,d.113.1.4 100851,100852 1ojrA 274 6.05e+01 c.74.1.1 93147 1k8kA 418 6.09e+01 c.55.1.1,c.55.1.1 68305,68306 1xl7A 612 6.16e+01 1lj8A 493 6.30e+01 a.100.1.9,c.2.1.6 90392,90393 1wrvA 308 6.33e+01 1gzcA 239 6.34e+01 b.29.1.1 70803 1nthA 458 6.35e+01 c.1.25.1 80730 1yymG 313 6.41e+01 1odhA 174 6.44e+01 d.239.1.1 86850 1qwoA 442 6.47e+01 c.60.1.2 104620 1vd5A 377 6.53e+01 a.102.1.7 108518 1ww8A 439 6.70e+01 2bb6A 414 6.75e+01 2bcgG 453 6.76e+01 1f0kA 364 6.76e+01 1f0kA c.87.1.2 35465 1r0mA 375 6.77e+01 c.1.11.2,d.54.1.1 104747,104748 2aq5A 402 6.78e+01 1xqwA 293 6.84e+01 1cojA 212 6.88e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1ylnA 252 6.88e+01 1v4pA 157 6.90e+01 1ur6B 52 6.91e+01 g.44.1.1 99812 1my6A 199 6.94e+01 a.2.11.1,d.44.1.1 85232,85233 2fug1 438 6.99e+01 2g8yA 385 7.05e+01 1snrA 341 7.10e+01 b.6.1.3,b.6.1.3 105823,105824 1vavA 222 7.27e+01 b.29.1.18 108472 1ogdA 131 7.29e+01 c.133.1.1 92893 1rlmA 271 7.30e+01 1dl0A 37 7.34e+01 1dl0A g.3.6.2 44112 1efdN 266 7.57e+01 1efdN c.92.2.1 35597 1orvA 728 7.64e+01 b.70.3.1,c.69.1.24 87354,87355 1o0xA 262 7.66e+01 d.127.1.1 80755 1rlyA 60 7.72e+01 g.41.3.1 104988 1ptq 50 7.74e+01 1ptq g.49.1.1 45349 2anxA 146 7.78e+01 1ospO 257 7.80e+01 1ospO b.76.1.1 27971 2c1xA 456 7.92e+01 1pgs 314 8.07e+01 1pgs b.121.1.1,b.121.1.1 23653,23654 2cn3A 737 8.09e+01 2fqpA 97 8.31e+01 1ykdA 398 8.44e+01 1jndA 420 8.51e+01 c.1.8.5,d.26.3.1 71757,71758 1ci9A 392 8.57e+01 e.3.1.1 64767 1lvoA 302 8.62e+01 b.47.1.4 74284 1ia8A 289 8.67e+01 1ia8A d.144.1.7 62112 8fabB 224 8.80e+01 1igtB b.1.1.1,b.1.1.2 19773,20883 2bw4A 340 8.82e+01 1hr6A 475 8.89e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1q74A 303 8.94e+01 c.134.1.1 96019 2ffyA 358 8.95e+01 2b7kA 200 8.97e+01