# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s72Z 73 1.84e-01 g.41.8.1 105345 1vqoZ 83 1.97e-01 2ct7A 86 2.92e-01 1jj2Y 73 1.29e+00 1ffkW g.41.8.1 63110 1odhA 174 1.41e+00 d.239.1.1 86850 1y9wA 140 1.43e+00 1vk6A 269 1.97e+00 d.113.1.4,d.113.1.4 100851,100852 1vckA 115 2.37e+00 1hvyA 288 2.45e+00 1bkpA d.117.1.1 41049 1wd2A 60 2.86e+00 g.44.1.1 109232 1ypvA 313 3.72e+00 1rlyA 60 4.14e+00 g.41.3.1 104988 1xxoA 147 4.24e+00 2aq4A 434 4.36e+00 1w9aA 147 4.37e+00 1qxfA 66 4.61e+00 g.41.8.4 96527 1ww8A 439 4.71e+00 1dl6A 58 4.96e+00 1dl6A g.41.3.1 45207 2aq6A 147 5.29e+00 1wrvA 308 5.40e+00 1neeA 138 6.67e+00 d.241.1.1,g.59.1.1 91841,91842 1jm1A 204 6.68e+00 b.33.1.1 71745 1d0qA 103 6.85e+00 1d0qA g.41.3.2 45208 1qvbA 481 7.62e+00 1qvbA c.1.8.4 28983 2a8mA 420 7.71e+00 1z4rA 168 7.90e+00 1adn 92 8.21e+00 1adn g.48.1.1 45348 2a1rA 430 8.96e+00 1wpkA 146 1.00e+01 1ee8A 266 1.01e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1yovA 537 1.03e+01 1mswD 883 1.06e+01 e.8.1.3 79427 1zgwA 139 1.08e+01 1yk4A 52 1.09e+01 1theA 260 1.14e+01 1theB d.3.1.1 37056 1x75A 132 1.19e+01 2g8yA 385 1.31e+01 1n9dA 199 1.37e+01 a.26.1.1 85464 2sak 121 1.40e+01 2sak d.15.5.1 37711 1qwtA 255 1.44e+01 b.26.1.3 96501 1ywzA 175 1.48e+01 2a8jA 420 1.51e+01 1i76A 163 1.52e+01 1hfc d.92.1.11 61877 1tr9A 341 1.56e+01 1yc5A 246 1.70e+01 1t0bA 252 1.71e+01 c.23.16.6 106199 1plq 258 1.85e+01 1plq d.131.1.2,d.131.1.2 41388,41389 2kfnA 605 1.86e+01 1xwl c.55.3.5,e.8.1.1 33682,42975 1rb9 53 1.92e+01 1rb9 g.41.5.1 45214 1dgfA 497 1.93e+01 1cf9A e.5.1.1 42782 1qz5A 375 1.97e+01 c.55.1.1,c.55.1.1 96614,96615 830cA 168 1.97e+01 1ck7A d.92.1.11 40400 1ur6B 52 2.00e+01 g.44.1.1 99812 1vd4A 62 2.03e+01 1tz9A 367 2.05e+01 c.1.15.6 107466 1ptq 50 2.08e+01 1ptq g.49.1.1 45349 1l1oC 181 2.11e+01 b.40.4.3 73480 1exkA 79 2.13e+01 1exkA g.54.1.1 45384 1bc8C 93 2.14e+01 1awcA a.4.5.21 16168 1wijA 140 2.21e+01 1j6zA 376 2.25e+01 1yagA c.55.1.1,c.55.1.1 62667,62668 1ifqA 138 2.29e+01 1ifqA d.110.4.1 62350 1pfvA 551 2.30e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1dl0A 37 2.32e+01 1dl0A g.3.6.2 44112 1nx8A 273 2.36e+01 b.82.2.8 86374 2awpA 198 2.38e+01 1f4lA 551 2.41e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 2bx9A 53 2.45e+01 2fqpA 97 2.50e+01 1kmtA 141 2.52e+01 b.1.18.8 77442 1e53A 59 2.54e+01 1e53A g.49.1.2 45356 1p5vA 235 2.54e+01 b.1.11.1,b.7.2.1 87812,87813 1sp1 29 2.58e+01 g.37.1.1 45051 1vor2 58 2.59e+01 1fsoA 139 2.65e+01 1rhoA b.1.18.8 60007 1zyoA 191 2.70e+01 1m22A 503 2.70e+01 c.117.1.1 78464 2fxuA 375 2.75e+01 1v87A 114 2.83e+01 g.44.1.1 108422 2a20A 62 2.83e+01 1d4xA 375 2.90e+01 1yagA c.55.1.1,c.55.1.1 59107,59108 1iro 54 2.94e+01 1rb9 g.41.5.1 45223 1yl35 60 2.95e+01 2bbkL 125 3.12e+01 2bbkL g.21.1.1 44882 1jx4A 352 3.13e+01 d.240.1.1,e.8.1.7 90378,90379 2btfA 375 3.16e+01 1yagA c.55.1.1,c.55.1.1 33429,33430 1ojaA 520 3.19e+01 c.3.1.2,d.16.1.5 93096,93097 1s3eA 520 3.19e+01 c.3.1.2,d.16.1.5 98426,98427 1rdg 53 3.20e+01 1rb9 g.41.5.1 45221 1r6lA 239 3.21e+01 d.14.1.4,d.101.1.1 97153,97154 1fp0A 88 3.22e+01 1fp0A g.50.1.2 45361 1hw5A 210 3.22e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1wfeA 86 3.23e+01 1dgaA 375 3.25e+01 1yagA 1p32A 209 3.25e+01 1p32A d.25.1.1 38379 1utyA 187 3.31e+01 b.147.1.1 108036 1dxgA 36 3.38e+01 1dxgA g.41.5.2 45247 1jgsA 138 3.42e+01 a.4.5.28 66683 1dpo 223 3.44e+01 5ptp b.47.1.2 25975 2c1xA 456 3.47e+01 1jfrA 262 3.51e+01 1jfrA c.69.1.16 34724 1ty9A 222 3.62e+01 3daaA 277 3.83e+01 1daaA e.17.1.1 43272 1ys4A 354 3.86e+01 2cxkA 95 3.87e+01 1mea 28 4.01e+01 g.41.1.1 45176 1i50I 122 4.10e+01 g.41.3.1,g.41.3.1 61762,61763 1vq0A 302 4.11e+01 1inp 400 4.12e+01 1inp e.7.1.1 42972 1k7cA 233 4.13e+01 c.23.10.4 68267 1wuaA 375 4.19e+01 1bq9A 54 4.29e+01 1rb9 g.41.5.1 45238 1q68B 29 4.30e+01 j.108.1.1 95963 1deoA 233 4.31e+01 1deoA c.23.10.4 31345 2cklA 108 4.32e+01 1brfA 53 4.36e+01 1rb9 g.41.5.1 45236 1q35A 320 4.39e+01 c.94.1.1 95661 1r5mA 425 4.52e+01 1qstA 160 4.53e+01 1yghA d.108.1.1 40804 2aw2B 108 4.54e+01 1vziA 126 4.58e+01 b.1.13.1,g.41.5.2 108967,108968 1m2kA 249 4.67e+01 c.31.1.5 84754 1zzpA 130 4.72e+01 1ogdA 131 4.72e+01 c.133.1.1 92893 1l8dA 112 4.76e+01 h.4.12.1 73687 1vekA 84 4.78e+01 1twfI 122 4.91e+01 1woyA 500 5.07e+01 1wxiA 275 5.11e+01 1i6xA 209 5.33e+01 a.4.5.4,b.82.3.2 83673,83674 2cklB 165 5.36e+01 1evfA 264 5.39e+01 1bkpA d.117.1.1 40932 2gatA 66 5.40e+01 1gatA g.39.1.1 45102 1vqoC 246 5.43e+01 2g8mA 264 5.50e+01 1iyeA 309 5.52e+01 e.17.1.1 83786 1qqqA 264 5.53e+01 1bkpA d.117.1.1 40931 1u24A 337 5.57e+01 2aegA 268 5.59e+01 1ab4 477 5.62e+01 1ab4 e.11.1.1 43251 1z6uA 150 5.66e+01 1k3eA 156 5.73e+01 d.198.1.1 68103 1qlnA 883 5.82e+01 1cezA e.8.1.3 43111 1mr1C 99 5.89e+01 d.217.1.2 79420 2fqaA 27 5.90e+01 1i1kA 309 5.90e+01 1daaA e.17.1.1 61533 1jj2C 246 5.91e+01 1ffkC c.22.1.1 63087 1s72C 246 5.99e+01 c.22.1.1 105321 1sur 215 6.05e+01 1sur c.26.2.2 31620 1hn6A 110 6.14e+01 g.61.1.1 76721 6rxn 46 6.29e+01 1rb9 g.41.5.1 45222 1t3cA 421 6.32e+01 d.92.1.7 106343 1erjA 393 6.41e+01 1erjA b.69.4.1 27660 1cojA 212 6.46e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1nxjA 183 6.57e+01 c.8.7.1 86382 1c3hA 137 6.57e+01 b.22.1.1 90405 1zsqA 528 6.73e+01 1m3vA 122 6.77e+01 g.39.1.3,g.39.1.3 84794,84795 1xi7A 61 6.81e+01 1wwcA 118 6.81e+01 1wwcA b.1.1.4 21778 1c28A 135 6.88e+01 1c28A b.22.1.1 23857 1lr5A 163 6.94e+01 b.82.1.2 74215 4eugA 229 6.96e+01 3eugA c.18.1.1 31019 1wjpA 107 6.99e+01 2avuE 192 7.11e+01 2g8oA 264 7.15e+01 1lv3A 68 7.17e+01 g.39.1.9 78231 1k0mA 241 7.19e+01 a.45.1.1,c.47.1.5 67949,67950 1tljA 213 7.24e+01 d.282.1.1 107126 1qtwA 285 7.41e+01 1qumA c.1.15.1 29392 1i50L 70 7.54e+01 g.41.9.2 61766 1a8h 500 7.56e+01 1a8h a.27.1.1,c.26.1.1 16922,31589 1zpuA 534 7.70e+01 1gvjA 146 7.71e+01 a.4.5.21 90525 1sz6B 263 7.76e+01 1gp1A 198 7.96e+01 1gp1A c.47.1.10 33059 1jofA 365 7.99e+01 b.69.10.1 71775 1yo8A 634 8.03e+01 1u8bA 133 8.04e+01 7taa 478 8.05e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1zd9A 188 8.26e+01 1lm5A 214 8.46e+01 d.211.2.1 74029 1jb0F 164 8.51e+01 1jb0F f.23.16.1 62825 1rutX 188 8.61e+01 1a78A 134 8.84e+01 1c1lA b.29.1.3 24212 1rmd 116 8.85e+01 1rmd g.37.1.1,g.44.1.1 45025,45322