# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ct7A 86 1.30e-01 1vqoZ 83 1.94e-01 1s72Z 73 2.93e-01 g.41.8.1 105345 1kmtA 141 8.75e-01 b.1.18.8 77442 1fsoA 139 1.05e+00 1rhoA b.1.18.8 60007 1odhA 174 1.19e+00 d.239.1.1 86850 1jm1A 204 1.35e+00 b.33.1.1 71745 1neeA 138 1.48e+00 d.241.1.1,g.59.1.1 91841,91842 1d0qA 103 1.65e+00 1d0qA g.41.3.2 45208 1dl6A 58 1.71e+00 1dl6A g.41.3.1 45207 1rlyA 60 1.73e+00 g.41.3.1 104988 1jj2Y 73 1.80e+00 1ffkW g.41.8.1 63110 1vk6A 269 1.87e+00 d.113.1.4,d.113.1.4 100851,100852 1vckA 115 1.89e+00 1qvbA 481 2.01e+00 1qvbA c.1.8.4 28983 1zgwA 139 2.39e+00 1wrvA 308 3.52e+00 1qxfA 66 3.84e+00 g.41.8.4 96527 1l1oC 181 3.88e+00 b.40.4.3 73480 2cklB 165 4.51e+00 1vd4A 62 4.89e+00 1ee8A 266 5.09e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1wd2A 60 5.95e+00 g.44.1.1 109232 2fqpA 97 7.41e+00 1hyeA 313 7.45e+00 2cmd c.2.1.5,d.162.1.1 61400,61401 1t0bA 252 8.26e+00 c.23.16.6 106199 1mswD 883 8.32e+00 e.8.1.3 79427 3daaA 277 8.33e+00 1daaA e.17.1.1 43272 1hvyA 288 8.48e+00 1bkpA d.117.1.1 41049 1u8bA 133 8.53e+00 1r5mA 425 9.26e+00 1ww8A 439 9.33e+00 1ur6B 52 9.66e+00 g.44.1.1 99812 1w2lA 99 9.68e+00 1upiA 225 9.90e+00 b.82.1.1 99757 1jj2C 246 9.94e+00 1ffkC c.22.1.1 63087 1vqoC 246 9.96e+00 1s72C 246 1.04e+01 c.22.1.1 105321 1ypvA 313 1.07e+01 2sak 121 1.08e+01 2sak d.15.5.1 37711 1n9dA 199 1.09e+01 a.26.1.1 85464 1iyeA 309 1.14e+01 e.17.1.1 83786 2au3A 407 1.15e+01 1pfvA 551 1.17e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1wpkA 146 1.20e+01 1yk4A 52 1.21e+01 1plq 258 1.22e+01 1plq d.131.1.2,d.131.1.2 41388,41389 1adn 92 1.24e+01 1adn g.48.1.1 45348 1f4lA 551 1.25e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 1yovA 537 1.26e+01 1rb9 53 1.35e+01 1rb9 g.41.5.1 45214 1wxiA 275 1.41e+01 1qwtA 255 1.45e+01 b.26.1.3 96501 1v87A 114 1.49e+01 g.44.1.1 108422 1x75A 132 1.52e+01 1yl35 60 1.54e+01 1bc8C 93 1.59e+01 1awcA a.4.5.21 16168 1vor2 58 1.63e+01 1dxgA 36 1.65e+01 1dxgA g.41.5.2 45247 1exkA 79 1.66e+01 1exkA g.54.1.1 45384 1nykA 165 1.69e+01 b.33.1.1 86408 1k0mA 241 1.71e+01 a.45.1.1,c.47.1.5 67949,67950 1zy1B 197 1.72e+01 1k7hA 476 1.75e+01 c.76.1.1 72101 2bx9A 53 1.81e+01 1rfs 139 1.81e+01 1rfs b.33.1.1 24434 1wfeA 86 1.85e+01 1k8kA 418 1.86e+01 c.55.1.1,c.55.1.1 68305,68306 2a1rA 430 1.90e+01 1iro 54 1.91e+01 1rb9 g.41.5.1 45223 1ptq 50 1.94e+01 1ptq g.49.1.1 45349 2bwfA 77 2.04e+01 1fp0A 88 2.13e+01 1fp0A g.50.1.2 45361 1ifqA 138 2.16e+01 1ifqA d.110.4.1 62350 1rdg 53 2.22e+01 1rb9 g.41.5.1 45221 2aq6A 147 2.24e+01 7taa 478 2.30e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1uh4A 637 2.31e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1ji1A 637 2.31e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 2cklA 108 2.34e+01 1i1kA 309 2.34e+01 1daaA e.17.1.1 61533 1ogdA 131 2.40e+01 c.133.1.1 92893 1dgaA 375 2.53e+01 1yagA 1mr1C 99 2.54e+01 d.217.1.2 79420 1gvjA 146 2.63e+01 a.4.5.21 90525 1zd9A 188 2.66e+01 1xxoA 147 2.74e+01 1x31D 99 2.79e+01 1l8dA 112 2.80e+01 h.4.12.1 73687 1w9aA 147 2.80e+01 1d4xA 375 2.81e+01 1yagA c.55.1.1,c.55.1.1 59107,59108 2mtaC 147 2.82e+01 2mtaC a.3.1.1 15908 1vq0A 302 2.82e+01 1i6aA 219 2.83e+01 c.94.1.1 61827 1wuaA 375 2.84e+01 1vhqA 232 2.85e+01 c.23.16.2 100696 1mea 28 2.87e+01 g.41.1.1 45176 1zxzA 197 3.06e+01 1zyoA 191 3.07e+01 1p32A 209 3.09e+01 1p32A d.25.1.1 38379 1xakA 83 3.11e+01 1nx8A 273 3.32e+01 b.82.2.8 86374 1wjvA 79 3.33e+01 2cy5A 140 3.33e+01 1qz5A 375 3.33e+01 c.55.1.1,c.55.1.1 96614,96615 1c3hA 137 3.37e+01 b.22.1.1 90405 1inp 400 3.37e+01 1inp e.7.1.1 42972 1q35A 320 3.39e+01 c.94.1.1 95661 1vziA 126 3.39e+01 b.1.13.1,g.41.5.2 108967,108968 1lj5A 379 3.43e+01 e.1.1.1 73928 1wijA 140 3.45e+01 1i6xA 209 3.47e+01 a.4.5.4,b.82.3.2 83673,83674 1cojA 212 3.50e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1pvmA 184 3.52e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1sz6B 263 3.55e+01 1woyA 500 3.56e+01 1nxjA 183 3.57e+01 c.8.7.1 86382 1n2sA 299 3.58e+01 c.2.1.2 79857 1yt5A 258 3.58e+01 1cv8 174 3.63e+01 1cv8 d.3.1.1 37089 1t0fC 54 3.66e+01 1bq9A 54 3.69e+01 1rb9 g.41.5.1 45238 2avuE 192 3.73e+01 1brfA 53 3.73e+01 1rb9 g.41.5.1 45236 1h3nA 878 3.76e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1j6zA 376 3.78e+01 1yagA c.55.1.1,c.55.1.1 62667,62668 1dgfA 497 3.82e+01 1cf9A e.5.1.1 42782 1twfL 70 3.84e+01 6rxn 46 3.96e+01 1rb9 g.41.5.1 45222 1m2tB 263 4.02e+01 b.42.2.1,b.42.2.1 84762,84763 1jb0F 164 4.08e+01 1jb0F f.23.16.1 62825 1dxsA 80 4.16e+01 1cokA a.60.1.2 17944 1c28A 135 4.18e+01 1c28A b.22.1.1 23857 1o9iA 266 4.20e+01 a.25.1.3 92671 1u79A 129 4.20e+01 d.26.1.1 107714 1jkvA 266 4.20e+01 a.25.1.3 71719 2occF 98 4.23e+01 2occF g.41.5.3 45256 1sp1 29 4.24e+01 g.37.1.1 45051 1v54F 98 4.27e+01 g.41.5.3 100327 1weoA 93 4.28e+01 1u0tA 307 4.29e+01 e.52.1.1 107567 1zip 217 4.31e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1twfI 122 4.32e+01 1jgsA 138 4.36e+01 a.4.5.28 66683 1qtwA 285 4.38e+01 1qumA c.1.15.1 29392 2aq4A 434 4.40e+01 1fjgS 93 4.44e+01 1qkfA d.28.1.1 38451 1rmd 116 4.44e+01 1rmd g.37.1.1,g.44.1.1 45025,45322 1z4rA 168 4.52e+01 1r61A 207 4.53e+01 c.8.8.1 97138 2cxkA 95 4.57e+01 1ty9A 222 4.71e+01 1wraA 308 4.73e+01 1zzpA 130 4.73e+01 1zin 217 4.74e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1m22A 503 4.74e+01 c.117.1.1 78464 1y9wA 140 4.77e+01 1a8h 500 4.77e+01 1a8h a.27.1.1,c.26.1.1 16922,31589 2bhvA 246 4.82e+01 1lv3A 68 4.82e+01 g.39.1.9 78231 1z60A 59 4.90e+01 1k3eA 156 4.95e+01 d.198.1.1 68103 1a7cA 379 5.04e+01 1sek e.1.1.1 42660 1oahA 519 5.11e+01 a.138.1.3 86736 1uayA 242 5.13e+01 c.2.1.2 88390 1wjpA 107 5.14e+01 2fxuA 375 5.14e+01 1i50I 122 5.14e+01 g.41.3.1,g.41.3.1 61762,61763 2btfA 375 5.17e+01 1yagA c.55.1.1,c.55.1.1 33429,33430 1ti6B 274 5.18e+01 b.3.5.1,d.58.1.5 106976,106977 1qlaB 239 5.19e+01 1qlaB a.1.2.1,d.15.4.2 15679,37707 2aaa 484 5.26e+01 7taa b.71.1.1,c.1.8.1 27777,28764 1u24A 337 5.34e+01 1i50L 70 5.44e+01 g.41.9.2 61766 1vekA 84 5.50e+01 1m2kA 249 5.51e+01 c.31.1.5 84754 1tr9A 341 5.51e+01 2a20A 62 5.52e+01 1hw5A 210 5.61e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1ab4 477 5.68e+01 1ab4 e.11.1.1 43251 1ywzA 175 5.78e+01 1zkkA 167 5.85e+01 1t3qB 788 5.94e+01 d.41.1.1,d.133.1.1 106369,106370 1zsqA 528 5.98e+01 1g8kB 133 6.03e+01 1g8jB b.33.1.1 24435 1f83A 425 6.04e+01 1f82A d.92.1.7 40306 1dl0A 37 6.16e+01 1dl0A g.3.6.2 44112 1sur 215 6.22e+01 1sur c.26.2.2 31620 1rttA 193 6.28e+01 c.23.5.4 105098 2bydA 323 6.39e+01 2g8yA 385 6.39e+01 2aheA 267 6.48e+01 1hnuA 280 6.53e+01 1hnoA c.14.1.3 61096 2an1A 292 6.56e+01 1zvnA 99 6.57e+01 2b9dA 52 6.60e+01 1r8oB 71 6.69e+01 1kq1A 77 6.74e+01 b.38.1.2 72848 1a88A 275 6.83e+01 1brt c.69.1.12 34707 1b77A 228 6.88e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 2c31A 568 6.99e+01 1e53A 59 7.01e+01 1e53A g.49.1.2 45356 1pcxA 810 7.02e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1t2dA 322 7.02e+01 c.2.1.5,d.162.1.1 99084,99085 1wp5A 323 7.05e+01 1t3cA 421 7.18e+01 d.92.1.7 106343 1mwwA 128 7.19e+01 d.80.1.4 91483 1ldg 316 7.22e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 1u5kA 244 7.30e+01 1wdtA 665 7.32e+01 1preA 470 7.35e+01 1preA d.169.1.2,f.8.1.1 42437,43824 1qhfA 240 7.37e+01 1qhfA c.60.1.1 33960 1pk6C 129 7.38e+01 b.22.1.1 94803 1w66A 232 7.41e+01 1theA 260 7.70e+01 1theB d.3.1.1 37056 1erjA 393 7.72e+01 1erjA b.69.4.1 27660 1bnb 38 7.92e+01 1bnb g.9.1.1 44592 2fiyA 309 7.93e+01 1afp 51 7.96e+01 1afp g.26.1.1 44947 1z6uA 150 7.99e+01 1g6aA 271 7.99e+01 1btl e.3.1.1 42704 1pjhA 280 8.05e+01 c.14.1.3 94761 2cy2A 174 8.19e+01 1o12A 376 8.27e+01 b.92.1.5,c.1.9.10 80758,80759 1hl9A 449 8.30e+01 b.71.1.3,c.1.8.11 90650,90651 1a78A 134 8.33e+01 1c1lA b.29.1.3 24212 2c1xA 456 8.43e+01 1am2 199 8.44e+01 1am2 b.86.1.2 28381 1zkdA 387 8.47e+01 1mg2D 155 8.48e+01 a.3.1.1 79062 1n6zA 105 8.53e+01 d.263.1.1 85369 1uby 367 8.56e+01 1uby a.128.1.1 19435 2a6hC 1119 8.61e+01 1g8aA 227 8.70e+01 c.66.1.3 90506 1yc5A 246 8.71e+01 1lvoA 302 8.73e+01 b.47.1.4 74284 1iab 200 8.74e+01 1iae d.92.1.8 40312 1p5vA 235 8.77e+01 b.1.11.1,b.7.2.1 87812,87813 1ri6A 343 8.78e+01 b.69.11.1 97503 1tqnA 486 8.79e+01 a.104.1.1 107238 2aq5A 402 8.82e+01 2c43A 323 8.85e+01 1aq0A 306 8.87e+01 1aq0A c.1.8.3 28842 2awpA 198 8.93e+01 1of5B 184 8.94e+01 d.17.4.2 86934