PFRMAT RR TARGET T0348 AUTHOR SAM-T07 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplccrr.th62.17.730_47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz MODEL 1 MDAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEA RELAPEEEVKLEHHHHHH 4 13 0 8 0.0128706 4 14 0 8 0.0171224 4 20 0 8 0.0662465 4 32 0 8 0.041591 4 43 0 8 0.0175855 5 14 0 8 0.0179606 5 18 0 8 0.0768493 5 20 0 8 0.0756845 5 27 0 8 0.082844 5 28 0 8 0.0168191 5 29 0 8 0.0296624 5 32 0 8 0.0253665 5 35 0 8 0.0233636 5 36 0 8 0.0220109 5 38 0 8 0.045722 5 42 0 8 0.0777596 5 43 0 8 0.0784377 5 44 0 8 0.0692008 5 45 0 8 0.0578096 5 46 0 8 0.0939505 5 50 0 8 0.0416216 5 53 0 8 0.0306339 5 61 0 8 0.0275542 6 15 0 8 0.014898 6 16 0 8 0.026749 6 18 0 8 0.0958601 6 19 0 8 0.0348248 6 20 0 8 0.0810676 6 22 0 8 0.0211487 6 25 0 8 0.03142 6 26 0 8 0.0245242 6 27 0 8 0.136892 6 28 0 8 0.0228927 6 29 0 8 0.0504642 6 30 0 8 0.0279983 6 31 0 8 0.0201475 6 32 0 8 0.037929 6 33 0 8 0.0319619 6 34 0 8 0.0706191 6 35 0 8 0.0448301 6 36 0 8 0.0347144 6 37 0 8 0.0580469 6 38 0 8 0.0722833 6 39 0 8 0.0221642 6 40 0 8 0.0281106 6 41 0 8 0.0405741 6 42 0 8 0.0734607 6 43 0 8 0.114452 6 44 0 8 0.119637 6 45 0 8 0.0852555 6 46 0 8 0.118983 6 50 0 8 0.0881986 6 53 0 8 0.0470774 6 61 0 8 0.0343356 7 18 0 8 0.109592 7 20 0 8 0.160752 7 22 0 8 0.030375 7 27 0 8 0.0510682 7 29 0 8 0.0742381 7 31 0 8 0.0475386 7 32 0 8 0.0510759 7 35 0 8 0.0525805 7 36 0 8 0.0637215 7 38 0 8 0.0754944 7 40 0 8 0.0322998 7 43 0 8 0.043796 7 44 0 8 0.0474554 7 53 0 8 0.0590231 8 18 0 8 0.258983 8 20 0 8 0.173054 8 27 0 8 0.287538 8 28 0 8 0.0793549 8 29 0 8 0.086425 8 32 0 8 0.0585705 8 35 0 8 0.0660869 8 36 0 8 0.0666922 8 38 0 8 0.146215 8 42 0 8 0.156406 8 43 0 8 0.0912515 8 44 0 8 0.105612 8 45 0 8 0.158864 8 46 0 8 0.16258 8 50 0 8 0.0442329 8 53 0 8 0.0578599 8 61 0 8 0.0434153 9 18 0 8 0.375677 9 19 0 8 0.101134 9 20 0 8 0.173297 9 26 0 8 0.0728647 9 27 0 8 0.373667 9 28 0 8 0.0827721 9 29 0 8 0.105978 9 32 0 8 0.113654 9 33 0 8 0.0777541 9 34 0 8 0.0652176 9 35 0 8 0.107059 9 36 0 8 0.0897221 9 37 0 8 0.120325 9 38 0 8 0.189818 9 39 0 8 0.0478319 9 40 0 8 0.0658938 9 41 0 8 0.11296 9 42 0 8 0.168104 9 43 0 8 0.143909 9 44 0 8 0.118745 9 45 0 8 0.335464 9 46 0 8 0.175247 9 50 0 8 0.052346 9 53 0 8 0.0710964 9 61 0 8 0.0447158 10 19 0 8 0.0246108 10 20 0 8 0.179173 10 21 0 8 0.0262913 10 22 0 8 0.0611672 10 24 0 8 0.0491621 10 25 0 8 0.111058 10 26 0 8 0.0891763 10 27 0 8 0.133221 10 28 0 8 0.0223339 10 29 0 8 0.0735815 10 30 0 8 0.0298581 10 31 0 8 0.113343 10 32 0 8 0.0655115 10 33 0 8 0.0537979 10 34 0 8 0.0492249 10 35 0 8 0.100594 10 36 0 8 0.056399 10 37 0 8 0.0611553 10 38 0 8 0.0786251 10 39 0 8 0.0393451 10 40 0 8 0.0461592 10 41 0 8 0.0715109 10 42 0 8 0.0808052 10 43 0 8 0.0917772 10 44 0 8 0.0829278 10 45 0 8 0.230382 10 46 0 8 0.0932052 10 47 0 8 0.0405995 10 49 0 8 0.0576393 10 50 0 8 0.0514885 10 51 0 8 0.0499917 10 53 0 8 0.0619426 10 58 0 8 0.0241988 10 59 0 8 0.031265 10 61 0 8 0.0346776 10 64 0 8 0.0292692 10 65 0 8 0.0305848 11 20 0 8 0.0724208 11 21 0 8 0.0217314 11 22 0 8 0.0200411 11 24 0 8 0.0203658 11 25 0 8 0.0434358 11 26 0 8 0.0208355 11 27 0 8 0.0603413 11 28 0 8 0.0132 11 29 0 8 0.116687 11 30 0 8 0.0176348 11 31 0 8 0.0310414 11 32 0 8 0.0730744 11 33 0 8 0.044928 11 34 0 8 0.0512429 11 35 0 8 0.023017 11 36 0 8 0.0274341 11 37 0 8 0.0486699 11 38 0 8 0.0407899 11 39 0 8 0.0215411 11 40 0 8 0.0560707 11 41 0 8 0.0630431 11 42 0 8 0.0939121 11 43 0 8 0.153004 11 44 0 8 0.0798545 11 45 0 8 0.0865545 11 46 0 8 0.0762497 11 47 0 8 0.0265752 11 49 0 8 0.0251748 11 50 0 8 0.0484784 11 53 0 8 0.0315729 11 61 0 8 0.0250696 12 21 0 8 0.0156745 12 22 0 8 0.0185056 12 23 0 8 0.0382612 12 24 0 8 0.0255029 12 25 0 8 0.0540171 12 26 0 8 0.0264828 12 27 0 8 0.056396 12 28 0 8 0.0139666 12 29 0 8 0.0487198 12 30 0 8 0.0199684 12 31 0 8 0.0285534 12 32 0 8 0.0446741 12 33 0 8 0.0504291 12 34 0 8 0.0518718 12 35 0 8 0.0275189 12 36 0 8 0.0329006 12 37 0 8 0.0582091 12 38 0 8 0.0383641 12 39 0 8 0.0210537 12 40 0 8 0.0637516 12 41 0 8 0.0676158 12 42 0 8 0.0773008 12 43 0 8 0.160265 12 44 0 8 0.0752037 12 45 0 8 0.0767521 12 46 0 8 0.0717689 12 47 0 8 0.024819 12 49 0 8 0.032098 12 50 0 8 0.056776 12 51 0 8 0.026574 12 53 0 8 0.0347072 12 61 0 8 0.0297328 12 64 0 8 0.0262623 12 65 0 8 0.0222583 13 22 0 8 0.0364098 13 24 0 8 0.0843639 13 25 0 8 0.132474 13 26 0 8 0.0525207 13 27 0 8 0.0348917 13 28 0 8 0.026263 13 29 0 8 0.0920568 13 30 0 8 0.0415635 13 31 0 8 0.0879682 13 32 0 8 0.143841 13 33 0 8 0.107966 13 34 0 8 0.0557039 13 35 0 8 0.0488361 13 36 0 8 0.0406133 13 37 0 8 0.0730937 13 38 0 8 0.0694657 13 39 0 8 0.0544564 13 40 0 8 0.0528818 13 41 0 8 0.0548294 13 42 0 8 0.0539995 13 43 0 8 0.0472173 13 44 0 8 0.0772337 13 45 0 8 0.117485 13 46 0 8 0.093294 13 47 0 8 0.0763891 13 48 0 8 0.0559366 13 49 0 8 0.0433878 13 50 0 8 0.0475733 13 51 0 8 0.03515 13 53 0 8 0.0565857 13 61 0 8 0.038517 13 64 0 8 0.0392267 13 65 0 8 0.0406722 14 24 0 8 0.0704469 14 25 0 8 0.0830077 14 26 0 8 0.0402992 14 27 0 8 0.0332866 14 28 0 8 0.0247981 14 29 0 8 0.46757 14 30 0 8 0.0511136 14 31 0 8 0.0865228 14 32 0 8 0.295272 14 33 0 8 0.16881 14 34 0 8 0.0978066 14 35 0 8 0.0362577 14 36 0 8 0.041654 14 37 0 8 0.098589 14 38 0 8 0.0631976 14 39 0 8 0.0483807 14 40 0 8 0.0798568 14 41 0 8 0.0640246 14 42 0 8 0.0603451 14 43 0 8 0.0917176 14 44 0 8 0.183126 14 45 0 8 0.144288 14 46 0 8 0.145478 14 47 0 8 0.0782373 14 48 0 8 0.0443297 14 49 0 8 0.0628943 14 50 0 8 0.068417 14 51 0 8 0.0286518 14 53 0 8 0.0479292 14 61 0 8 0.0312005 14 64 0 8 0.0318565 14 65 0 8 0.0295094 15 24 0 8 0.0726418 15 25 0 8 0.0945871 15 26 0 8 0.0337328 15 27 0 8 0.0284041 15 28 0 8 0.0215586 15 29 0 8 0.0949282 15 30 0 8 0.0462327 15 31 0 8 0.0364728 15 32 0 8 0.0943489 15 33 0 8 0.0776929 15 34 0 8 0.0514242 15 35 0 8 0.0323804 15 36 0 8 0.0371433 15 37 0 8 0.087033 15 38 0 8 0.0470547 15 39 0 8 0.0327754 15 40 0 8 0.0740214 15 41 0 8 0.0522774 15 42 0 8 0.0457074 15 43 0 8 0.082587 15 44 0 8 0.0729312 15 45 0 8 0.195462 15 46 0 8 0.0960588 15 47 0 8 0.0379438 15 49 0 8 0.0588996 15 50 0 8 0.0517482 15 53 0 8 0.0348019 16 25 0 8 0.135681 16 26 0 8 0.0508292 16 27 0 8 0.188074 16 28 0 8 0.13597 16 29 0 8 0.333994 16 30 0 8 0.265421 16 31 0 8 0.099214 16 32 0 8 0.109111 16 33 0 8 0.102068 16 34 0 8 0.0656136 16 35 0 8 0.0759561 16 36 0 8 0.139986 16 37 0 8 0.179463 16 38 0 8 0.128528 16 39 0 8 0.0682807 16 40 0 8 0.0482845 16 41 0 8 0.0795371 16 42 0 8 0.0638632 16 43 0 8 0.0838084 16 44 0 8 0.0964164 16 45 0 8 0.197028 16 46 0 8 0.178523 16 47 0 8 0.0521555 16 49 0 8 0.080747 16 50 0 8 0.0712462 16 51 0 8 0.0349539 16 53 0 8 0.0636564 17 27 0 8 0.207959 17 28 0 8 0.137749 17 29 0 8 0.591019 17 30 0 8 0.384397 17 31 0 8 0.152917 17 32 0 8 0.330583 17 33 0 8 0.124693 17 35 0 8 0.182697 17 36 0 8 0.164431 17 37 0 8 0.231125 17 38 0 8 0.186581 17 39 0 8 0.0671904 17 40 0 8 0.0852033 17 41 0 8 0.120284 17 43 0 8 0.0645693 17 44 0 8 0.150543 17 46 0 8 0.194704 17 47 0 8 0.0785936 18 27 0 8 0.822852 18 28 0 8 0.426052 18 29 0 8 0.54932 18 30 0 8 0.472441 18 31 0 8 0.0929493 18 32 0 8 0.114507 18 33 0 8 0.0947937 18 34 0 8 0.0975161 18 35 0 8 0.366415 18 36 0 8 0.379788 18 37 0 8 0.225454 18 38 0 8 0.496153 18 39 0 8 0.0650759 18 40 0 8 0.0750207 18 41 0 8 0.115485 18 42 0 8 0.120295 18 43 0 8 0.156147 18 44 0 8 0.119096 18 45 0 8 0.214926 18 46 0 8 0.167567 18 47 0 8 0.0763469 18 49 0 8 0.0632473 18 50 0 8 0.0690272 18 53 0 8 0.07211 18 61 0 8 0.0464867 19 28 0 8 0.504721 19 29 0 8 0.516661 19 30 0 8 0.542242 19 31 0 8 0.072262 19 32 0 8 0.0425175 19 33 0 8 0.032991 19 34 0 8 0.0187269 19 35 0 8 0.0745946 19 36 0 8 0.368651 19 37 0 8 0.131932 19 38 0 8 0.153631 19 39 0 8 0.0252423 19 40 0 8 0.0218365 19 41 0 8 0.0376397 19 42 0 8 0.0262979 19 43 0 8 0.0391936 19 44 0 8 0.0341304 19 45 0 8 0.043018 19 46 0 8 0.0502993 19 47 0 8 0.0303066 19 50 0 8 0.0191979 19 53 0 8 0.0243219 20 29 0 8 0.0338048 20 30 0 8 0.038119 20 32 0 8 0.0453762 20 33 0 8 0.0129284 20 34 0 8 0.0269374 20 35 0 8 0.0253408 20 36 0 8 0.0314386 20 37 0 8 0.0255358 20 38 0 8 0.0322172 20 39 0 8 0.0106194 20 40 0 8 0.00710957 20 42 0 8 0.012581 20 43 0 8 0.0175694 20 44 0 8 0.0227231 20 45 0 8 0.0244941 20 46 0 8 0.0262753 20 49 0 8 0.00914964 20 50 0 8 0.0255495 20 53 0 8 0.0184881 20 61 0 8 0.0140999 21 30 0 8 0.0699045 21 31 0 8 0.077913 21 32 0 8 0.103611 21 33 0 8 0.0720481 21 34 0 8 0.093636 21 35 0 8 0.0497637 21 36 0 8 0.0403128 21 38 0 8 0.0381501 21 40 0 8 0.048801 21 41 0 8 0.029189 21 42 0 8 0.021827 21 43 0 8 0.0400306 21 44 0 8 0.0724347 21 45 0 8 0.0568504 21 46 0 8 0.076116 21 50 0 8 0.0971571 21 53 0 8 0.0350964 22 32 0 8 0.0400248 24 40 0 8 0.029253 25 34 0 8 0.0313602 25 35 0 8 0.0587155 25 36 0 8 0.092278 25 37 0 8 0.080533 25 38 0 8 0.0588943 25 39 0 8 0.0679853 25 40 0 8 0.0402831 25 41 0 8 0.0416104 25 42 0 8 0.038694 25 43 0 8 0.0344388 25 44 0 8 0.0454877 25 45 0 8 0.0813722 25 46 0 8 0.0763596 25 47 0 8 0.0645083 25 48 0 8 0.0454293 25 49 0 8 0.0490987 25 50 0 8 0.0394876 25 51 0 8 0.0356173 25 53 0 8 0.0455689 25 61 0 8 0.0344969 25 64 0 8 0.0468667 25 65 0 8 0.04085 26 35 0 8 0.329475 26 36 0 8 0.392832 26 37 0 8 0.509153 26 38 0 8 0.430591 26 39 0 8 0.12319 26 40 0 8 0.0684769 26 41 0 8 0.0575338 26 42 0 8 0.057045 26 43 0 8 0.0634431 26 44 0 8 0.187723 26 45 0 8 0.322739 26 46 0 8 0.223598 26 47 0 8 0.121191 26 50 0 8 0.0607542 26 53 0 8 0.0736404 27 36 0 8 0.419035 27 37 0 8 0.333197 27 38 0 8 0.503982 27 39 0 8 0.0302782 27 40 0 8 0.0321807 27 41 0 8 0.0369157 27 42 0 8 0.0694785 27 43 0 8 0.117632 27 44 0 8 0.316132 27 45 0 8 0.274186 27 46 0 8 0.333102 27 47 0 8 0.0477084 27 49 0 8 0.0512284 27 50 0 8 0.146036 27 53 0 8 0.0796501 27 61 0 8 0.0344365 28 37 0 8 0.0758886 28 38 0 8 0.0756032 28 42 0 8 0.0176824 28 43 0 8 0.0165379 28 44 0 8 0.0480452 28 45 0 8 0.0624581 28 46 0 8 0.0613366 28 50 0 8 0.0362362 28 53 0 8 0.0309394 29 38 0 8 0.0721949 29 40 0 8 0.0840765 29 42 0 8 0.0407679 29 43 0 8 0.0837494 29 44 0 8 0.20205 29 45 0 8 0.0927607 29 46 0 8 0.135582 29 50 0 8 0.123503 29 53 0 8 0.0751651 30 40 0 8 0.0203462 31 40 0 8 0.0333225 31 41 0 8 0.0315564 32 41 0 8 0.0258664 32 42 0 8 0.0335718 32 43 0 8 0.0608725 32 44 0 8 0.0980233 32 45 0 8 0.113142 32 46 0 8 0.1313 32 47 0 8 0.0809013 32 48 0 8 0.0518971 32 49 0 8 0.0454591 32 50 0 8 0.0610756 32 51 0 8 0.0395992 32 53 0 8 0.0844419 32 58 0 8 0.038707 32 61 0 8 0.0446826 32 64 0 8 0.0572895 32 65 0 8 0.0448161 33 42 0 8 0.0315383 33 43 0 8 0.0602412 33 44 0 8 0.079254 33 45 0 8 0.102573 33 46 0 8 0.127877 33 47 0 8 0.0533716 33 48 0 8 0.0477053 33 49 0 8 0.0516224 33 50 0 8 0.0519221 33 51 0 8 0.0261602 33 52 0 8 0.0172164 33 53 0 8 0.0526524 33 54 0 8 0.0470282 33 58 0 8 0.0503401 33 61 0 8 0.0500433 33 64 0 8 0.049352 33 65 0 8 0.041397 34 43 0 8 0.0881995 34 44 0 8 0.215142 34 45 0 8 0.207012 34 46 0 8 0.152082 34 47 0 8 0.0507517 34 48 0 8 0.028889 34 49 0 8 0.0826182 34 50 0 8 0.253783 34 51 0 8 0.0476825 34 53 0 8 0.101823 34 58 0 8 0.0879695 34 61 0 8 0.0579353 34 64 0 8 0.0571162 34 65 0 8 0.0382727 35 44 0 8 0.240384 35 45 0 8 0.216476 35 46 0 8 0.160413 35 47 0 8 0.0426276 35 49 0 8 0.0620478 35 50 0 8 0.29577 35 51 0 8 0.0866408 35 53 0 8 0.082732 35 58 0 8 0.0345538 35 61 0 8 0.025178 35 64 0 8 0.0256304 35 65 0 8 0.013358 36 45 0 8 0.180943 36 46 0 8 0.175088 36 47 0 8 0.0208999 36 49 0 8 0.0275522 36 50 0 8 0.0780583 36 51 0 8 0.0177869 36 53 0 8 0.0467206 36 58 0 8 0.0310397 36 61 0 8 0.0246166 37 46 0 8 0.141098 37 47 0 8 0.0302609 37 49 0 8 0.0362205 37 50 0 8 0.0830895 37 51 0 8 0.0269312 37 53 0 8 0.0344738 38 47 0 8 0.0502412 38 49 0 8 0.0454276 38 50 0 8 0.156445 38 51 0 8 0.0322182 38 53 0 8 0.0758115 38 58 0 8 0.042716 38 59 0 8 0.0302271 38 61 0 8 0.0536382 38 64 0 8 0.0348204 38 65 0 8 0.0383204 39 49 0 8 0.0782796 39 50 0 8 0.118017 39 53 0 8 0.0444439 40 49 0 8 0.0325512 40 50 0 8 0.0738305 40 51 0 8 0.0244808 40 53 0 8 0.0287123 40 58 0 8 0.0504938 40 61 0 8 0.0401611 40 64 0 8 0.0336246 40 65 0 8 0.0220095 41 50 0 8 0.0913095 41 51 0 8 0.0338136 41 53 0 8 0.0678629 41 61 0 8 0.0545831 41 64 0 8 0.0542637 41 65 0 8 0.0515331 42 51 0 8 0.0489158 42 53 0 8 0.118585 42 54 0 8 0.0717485 42 57 0 8 0.0671724 42 58 0 8 0.054976 42 59 0 8 0.0447753 42 60 0 8 0.0619937 42 61 0 8 0.0608753 42 63 0 8 0.0520158 42 64 0 8 0.0624208 42 65 0 8 0.0530621 43 52 0 8 0.0170433 43 53 0 8 0.0797432 43 54 0 8 0.0332561 43 57 0 8 0.0624664 43 58 0 8 0.0559807 43 59 0 8 0.0382004 43 60 0 8 0.0345884 43 61 0 8 0.0541023 43 62 0 8 0.0362722 43 63 0 8 0.0331505 43 64 0 8 0.053145 43 65 0 8 0.0480302 44 53 0 8 0.0687248 44 54 0 8 0.0257788 44 57 0 8 0.0459306 44 58 0 8 0.06416 44 59 0 8 0.0358415 44 60 0 8 0.0210555 44 61 0 8 0.0568986 44 63 0 8 0.0234091 44 64 0 8 0.0390309 44 65 0 8 0.0387209 45 57 0 8 0.0202038 45 58 0 8 0.0497212 45 59 0 8 0.0174939 45 61 0 8 0.0308229 45 64 0 8 0.0195904 45 65 0 8 0.0156493 46 57 0 8 0.0378795 46 58 0 8 0.056842 46 59 0 8 0.0290909 46 60 0 8 0.0189129 46 61 0 8 0.0581423 46 63 0 8 0.0215738 46 64 0 8 0.0366994 46 65 0 8 0.029298 47 57 0 8 0.0415511 47 58 0 8 0.0614553 47 59 0 8 0.0299411 47 61 0 8 0.044354 47 64 0 8 0.0275221 47 65 0 8 0.022172 49 58 0 8 0.0440677 49 61 0 8 0.0287262 50 59 0 8 0.0414142 50 60 0 8 0.0208637 50 61 0 8 0.0545086 50 62 0 8 0.0436233 50 63 0 8 0.0235288 50 64 0 8 0.0467938 50 65 0 8 0.0353098 51 60 0 8 0.00944508 51 61 0 8 0.0151838 51 62 0 8 0.011185 51 63 0 8 0.0103936 51 64 0 8 0.0179908 51 65 0 8 0.0144673 53 64 0 8 0.0263248 53 65 0 8 0.026504 END