# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vqoZ 83 1.21e-01 2ct7A 86 1.23e-01 1vk6A 269 8.08e-01 d.113.1.4,d.113.1.4 100851,100852 1vckA 115 1.11e+00 1rlyA 60 1.38e+00 g.41.3.1 104988 1ww8A 439 1.54e+00 1odhA 174 1.54e+00 d.239.1.1 86850 1jm1A 204 2.04e+00 b.33.1.1 71745 1wd2A 60 2.23e+00 g.44.1.1 109232 1kmtA 141 2.28e+00 b.1.18.8 77442 1mswD 883 2.63e+00 e.8.1.3 79427 2fqpA 97 2.83e+00 2g2kA 170 2.85e+00 1s9rA 410 3.11e+00 d.126.1.4 98758 1y9wA 140 3.21e+00 1qxfA 66 3.30e+00 g.41.8.4 96527 1l1oC 181 3.46e+00 b.40.4.3 73480 1x75A 132 3.51e+00 1ee8A 266 3.95e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1ogdA 131 4.04e+00 c.133.1.1 92893 1wrvA 308 4.13e+00 1k7cA 233 4.32e+00 c.23.10.4 68267 1yk4A 52 4.61e+00 1nykA 165 5.01e+00 b.33.1.1 86408 1vd4A 62 5.08e+00 1d0qA 103 5.95e+00 1d0qA g.41.3.2 45208 2bwfA 77 6.90e+00 1neeA 138 7.95e+00 d.241.1.1,g.59.1.1 91841,91842 1wjvA 79 8.15e+00 1ur6B 52 8.53e+00 g.44.1.1 99812 1u8bA 133 9.71e+00 1ypvA 313 1.02e+01 1k8kA 418 1.04e+01 c.55.1.1,c.55.1.1 68305,68306 1iro 54 1.06e+01 1rb9 g.41.5.1 45223 2avuE 192 1.17e+01 2sak 121 1.25e+01 2sak d.15.5.1 37711 1rb9 53 1.27e+01 1rb9 g.41.5.1 45214 1dxgA 36 1.28e+01 1dxgA g.41.5.2 45247 2awpA 198 1.28e+01 1dl0A 37 1.39e+01 1dl0A g.3.6.2 44112 1mr1C 99 1.40e+01 d.217.1.2 79420 1dgfA 497 1.47e+01 1cf9A e.5.1.1 42782 1inp 400 1.51e+01 1inp e.7.1.1 42972 1kyqA 274 1.51e+01 c.2.1.11,e.37.1.1 73281,73282 1ptq 50 1.52e+01 1ptq g.49.1.1 45349 1vhqA 232 1.58e+01 c.23.16.2 100696 1weoA 93 1.74e+01 1cv8 174 1.81e+01 1cv8 d.3.1.1 37089 1wxiA 275 1.96e+01 1rdg 53 1.96e+01 1rb9 g.41.5.1 45221 1r5mA 425 1.97e+01 1k7hA 476 2.03e+01 c.76.1.1 72101 1w9aA 147 2.07e+01 1lm5A 214 2.24e+01 d.211.2.1 74029 1wijA 140 2.24e+01 1wfeA 86 2.29e+01 2cy5A 140 2.31e+01 2cdqA 510 2.36e+01 1usyA 275 2.39e+01 1qqqA 264 2.39e+01 1bkpA d.117.1.1 40931 1pfvA 551 2.42e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1yovA 537 2.49e+01 2b5iD 217 2.49e+01 2bx9A 53 2.51e+01 1z6uA 150 2.63e+01 1fp0A 88 2.65e+01 1fp0A g.50.1.2 45361 1brfA 53 2.69e+01 1rb9 g.41.5.1 45236 1w8kA 447 2.81e+01 1rfs 139 2.82e+01 1rfs b.33.1.1 24434 1t0bA 252 2.88e+01 c.23.16.6 106199 1ty9A 222 2.89e+01 1b77A 228 2.92e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1y0kA 209 2.97e+01 1a78A 134 3.01e+01 1c1lA b.29.1.3 24212 1g5aA 628 3.14e+01 b.71.1.1,c.1.8.1 65152,65153 1l8dA 112 3.16e+01 h.4.12.1 73687 1zzpA 130 3.20e+01 2dasA 62 3.25e+01 1twfL 70 3.29e+01 2c43A 323 3.35e+01 2g8yA 385 3.36e+01 1zyoA 191 3.38e+01 1y88A 199 3.40e+01 1iyeA 309 3.51e+01 e.17.1.1 83786 2au3A 407 3.72e+01 1qamA 244 3.72e+01 2ercA c.66.1.24 34220 1q68B 29 3.78e+01 j.108.1.1 95963 1lvoA 302 3.86e+01 b.47.1.4 74284 1mea 28 3.86e+01 g.41.1.1 45176 1uh4A 637 3.87e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 7taa 478 3.87e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1ji1A 637 3.89e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1m22A 503 3.92e+01 c.117.1.1 78464 1upiA 225 3.93e+01 b.82.1.1 99757 2a1rA 430 3.94e+01 1xakA 83 4.01e+01 2cjsC 62 4.06e+01 1r6lA 239 4.07e+01 d.14.1.4,d.101.1.1 97153,97154 1hdlA 55 4.09e+01 g.68.1.2 65808 1vmhA 144 4.10e+01 1u24A 337 4.11e+01 1euvB 86 4.12e+01 1a5r d.15.1.1 37598 1qz5A 375 4.13e+01 c.55.1.1,c.55.1.1 96614,96615 1utyA 187 4.16e+01 b.147.1.1 108036 1gvjA 146 4.19e+01 a.4.5.21 90525 2fpeA 62 4.20e+01 1wjpA 107 4.30e+01 1yaxA 153 4.31e+01 1v6pA 62 4.39e+01 1xd3A 230 4.40e+01 1gqvA 135 4.45e+01 d.5.1.1 70376 2a20A 62 4.47e+01 1k0mA 241 4.58e+01 a.45.1.1,c.47.1.5 67949,67950 1qs1A 462 4.59e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1q35A 320 4.63e+01 c.94.1.1 95661 2cklB 165 4.63e+01 1o7eA 276 4.66e+01 e.3.1.1 92622 1wvkA 86 4.72e+01 1lv3A 68 4.73e+01 g.39.1.9 78231 1hyeA 313 4.84e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 2bcfA 276 5.21e+01 1w6vA 141 5.25e+01 2cy2A 174 5.29e+01 1ifqA 138 5.44e+01 1ifqA d.110.4.1 62350 1p5vA 235 5.54e+01 b.1.11.1,b.7.2.1 87812,87813 1cojA 212 5.63e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2sicI 107 5.65e+01 3ssi d.84.1.1 40031 1vq0A 302 5.67e+01 1vziA 126 5.68e+01 b.1.13.1,g.41.5.2 108967,108968 1twfI 122 5.69e+01 1jgsA 138 5.74e+01 a.4.5.28 66683 1pk6C 129 5.76e+01 b.22.1.1 94803 1xi7A 61 5.78e+01 1jb0K 83 5.78e+01 1jb0K f.30.1.1 62828 1guiA 155 5.86e+01 b.18.1.14 76351 2fiyA 309 6.00e+01 1zin 217 6.00e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1m2tB 263 6.03e+01 b.42.2.1,b.42.2.1 84762,84763 1u3eM 174 6.29e+01 d.4.1.3,d.285.1.1 107640,107641 2aq6A 147 6.32e+01 1x31D 99 6.37e+01 1o91A 178 6.37e+01 b.22.1.1 92656 2d8vA 67 6.40e+01 6rxn 46 6.43e+01 1rb9 g.41.5.1 45222 1q33A 292 6.54e+01 d.113.1.1 95657 1afp 51 6.59e+01 1afp g.26.1.1 44947 1ew4A 106 6.60e+01 1ew4A d.82.2.1 40023 2an1A 292 6.71e+01 1l1dA 152 6.91e+01 b.88.1.3 73452 1hcnA 92 6.97e+01 1hcnA g.17.1.4 44809 2eu8A 216 6.97e+01 2gu2A 312 7.06e+01 2fxuA 375 7.08e+01 1jofA 365 7.14e+01 b.69.10.1 71775 1zu0A 529 7.14e+01 2aheA 267 7.25e+01 1iugA 352 7.27e+01 c.67.1.3 90699 1w41A 101 7.33e+01 1juvA 193 7.33e+01 c.71.1.1 90912 2aq4A 434 7.40e+01 1v54D 147 7.44e+01 f.23.1.1 100325 1kdj 102 7.52e+01 1plc b.6.1.1 22864 1zvnA 99 7.65e+01 1zkkA 167 7.65e+01 1ri9A 102 7.66e+01 b.34.2.1 97506 1g6aA 271 7.74e+01 1btl e.3.1.1 42704 1bnb 38 7.95e+01 1bnb g.9.1.1 44592 1e7lA 157 7.96e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1ywzA 175 7.99e+01 1p32A 209 8.00e+01 1p32A d.25.1.1 38379 1i76A 163 8.15e+01 1hfc d.92.1.11 61877 1zx2A 147 8.17e+01 3daaA 277 8.25e+01 1daaA e.17.1.1 43272 4eugA 229 8.30e+01 3eugA c.18.1.1 31019 1w0uA 55 8.39e+01 1pk6A 133 8.44e+01 b.22.1.1 94801 1m40A 263 8.50e+01 e.3.1.1 74437 1z4rA 168 8.60e+01 1njqA 39 8.65e+01 g.37.1.3 85822 1e4iA 447 8.67e+01 1e70M c.1.8.4 59225 1aa6 715 8.71e+01 2napA b.52.2.2,c.81.1.1 26916,35324 2fqaA 27 8.72e+01 1jr7A 311 8.96e+01 b.82.2.3 63255