# List of top-scoring protein chains for t06-100-30-o_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vqoZ 83 3.12e-01 2fqpA 97 3.51e-01 2ct7A 86 6.66e-01 1ypvA 313 1.50e+00 1wd2A 60 1.74e+00 g.44.1.1 109232 1wrvA 308 2.11e+00 1ifqA 138 2.15e+00 1ifqA d.110.4.1 62350 1odhA 174 2.22e+00 d.239.1.1 86850 1sur 215 2.41e+00 1sur c.26.2.2 31620 1jm1A 204 2.41e+00 b.33.1.1 71745 1kmtA 141 2.46e+00 b.1.18.8 77442 1wjvA 79 2.98e+00 1l1oC 181 3.54e+00 b.40.4.3 73480 1k8kA 418 3.66e+00 c.55.1.1,c.55.1.1 68305,68306 1ee8A 266 3.87e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1lvoA 302 4.34e+00 b.47.1.4 74284 1ur6B 52 4.51e+00 g.44.1.1 99812 2g2kA 170 4.72e+00 1vk6A 269 5.37e+00 d.113.1.4,d.113.1.4 100851,100852 1xk5A 204 5.41e+00 1k7cA 233 5.54e+00 c.23.10.4 68267 1zd9A 188 5.56e+00 2g8oA 264 5.64e+00 1ww8A 439 5.67e+00 2awpA 198 5.71e+00 1p5vA 235 5.78e+00 b.1.11.1,b.7.2.1 87812,87813 2avuE 192 5.83e+00 2cklB 165 5.84e+00 1rlyA 60 5.97e+00 g.41.3.1 104988 1vd4A 62 6.10e+00 1xtqA 177 6.24e+00 2bwfA 77 6.35e+00 2g8mA 264 6.46e+00 2g8yA 385 6.62e+00 1y9wA 140 6.77e+00 1uk8A 282 6.99e+00 c.69.1.10 107907 1zkkA 167 7.11e+00 1vckA 115 7.32e+00 2cxvA 219 7.35e+00 1qqqA 264 7.42e+00 1bkpA d.117.1.1 40931 1inp 400 7.71e+00 1inp e.7.1.1 42972 1y88A 199 7.95e+00 1qxfA 66 8.39e+00 g.41.8.4 96527 1wfeA 86 8.50e+00 1gmyA 261 8.79e+00 d.3.1.1 76236 1zzpA 130 9.36e+00 1lv3A 68 9.49e+00 g.39.1.9 78231 1xakA 83 9.61e+00 1lm5A 214 9.74e+00 d.211.2.1 74029 1u69A 163 9.94e+00 d.32.1.7 107699 1q35A 320 1.02e+01 c.94.1.1 95661 1dxgA 36 1.04e+01 1dxgA g.41.5.2 45247 2as9A 210 1.05e+01 1z6uA 150 1.06e+01 1ty9A 222 1.06e+01 1u79A 129 1.08e+01 d.26.1.1 107714 1a78A 134 1.09e+01 1c1lA b.29.1.3 24212 2aq4A 434 1.11e+01 2aq5A 402 1.17e+01 1w9aA 147 1.20e+01 1umwA 237 1.24e+01 d.223.1.2,d.223.1.2 99631,99632 1uv4A 293 1.26e+01 1rdg 53 1.32e+01 1rb9 g.41.5.1 45221 1zu0A 529 1.37e+01 1yk4A 52 1.39e+01 1weoA 93 1.46e+01 3daaA 277 1.46e+01 1daaA e.17.1.1 43272 2dasA 62 1.49e+01 1tr9A 341 1.51e+01 1rb9 53 1.53e+01 1rb9 g.41.5.1 45214 1r6lA 239 1.53e+01 d.14.1.4,d.101.1.1 97153,97154 1wxiA 275 1.54e+01 1u8vA 490 1.55e+01 1yovA 537 1.56e+01 1cojA 212 1.59e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1yaxA 153 1.61e+01 1fvkA 189 1.62e+01 1fvkA c.47.1.13 90351 1utyA 187 1.65e+01 b.147.1.1 108036 1twfL 70 1.65e+01 1d3bA 75 1.68e+01 1d3bA b.38.1.1 24798 1r5mA 425 1.71e+01 2aq6A 147 1.71e+01 1ptq 50 1.71e+01 1ptq g.49.1.1 45349 1cv8 174 1.72e+01 1cv8 d.3.1.1 37089 1vziA 126 1.75e+01 b.1.13.1,g.41.5.2 108967,108968 2gpyA 233 1.75e+01 1q68B 29 1.77e+01 j.108.1.1 95963 2a20A 62 1.79e+01 1yopA 83 1.87e+01 1li4A 432 1.87e+01 c.2.1.4,c.23.12.3 84616,84617 1ywzA 175 1.90e+01 1fp0A 88 1.92e+01 1fp0A g.50.1.2 45361 1m22A 503 1.97e+01 c.117.1.1 78464 2cy5A 140 1.98e+01 1wjpA 107 1.99e+01 2erxA 172 2.02e+01 1brfA 53 2.06e+01 1rb9 g.41.5.1 45236 1eq2A 310 2.20e+01 1eq2A c.2.1.2 29814 1wijA 140 2.21e+01 2sak 121 2.23e+01 2sak d.15.5.1 37711 1m4uA 206 2.35e+01 g.17.1.7 78625 1dpgA 485 2.35e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 7taa 478 2.37e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1nykA 165 2.39e+01 b.33.1.1 86408 1pfvA 551 2.39e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1mswD 883 2.39e+01 e.8.1.3 79427 1mea 28 2.44e+01 g.41.1.1 45176 2fclA 169 2.46e+01 1ayoA 130 2.54e+01 1ayoA b.2.4.1 22431 1rutX 188 2.58e+01 1qtwA 285 2.60e+01 1qumA c.1.15.1 29392 1g4mA 393 2.61e+01 b.1.18.11,b.1.18.11 65143,65144 1m2tB 263 2.63e+01 b.42.2.1,b.42.2.1 84762,84763 1ti6B 274 2.67e+01 b.3.5.1,d.58.1.5 106976,106977 1ubkS 267 2.77e+01 e.19.1.1 88423 1umgA 362 2.78e+01 d.280.1.1 107956 2bx9A 53 2.79e+01 1h3nA 878 2.82e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1m2kA 249 2.86e+01 c.31.1.5 84754 1vdwA 254 2.94e+01 e.7.1.1 100569 1x75A 132 2.96e+01 6rxn 46 2.99e+01 1rb9 g.41.5.1 45222 1h4rA 314 3.00e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1nigA 152 3.00e+01 a.25.2.1 85740 1woyA 500 3.02e+01 1p32A 209 3.04e+01 1p32A d.25.1.1 38379 1e19A 314 3.05e+01 1b7bA c.73.1.1 34967 1fiqB 350 3.06e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 1x31D 99 3.09e+01 1zyoA 191 3.10e+01 1l1dA 152 3.12e+01 b.88.1.3 73452 1dxsA 80 3.14e+01 1cokA a.60.1.2 17944 2an1A 292 3.18e+01 2fs3A 282 3.21e+01 1h2wA 710 3.24e+01 b.69.7.1,c.69.1.4 76596,76597 1k0mA 241 3.32e+01 a.45.1.1,c.47.1.5 67949,67950 1rfs 139 3.34e+01 1rfs b.33.1.1 24434 1zin 217 3.36e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1iyeA 309 3.36e+01 e.17.1.1 83786 2d8vA 67 3.36e+01 2cwsA 237 3.38e+01 1xiwA 105 3.47e+01 1q33A 292 3.48e+01 d.113.1.1 95657 1m3qA 317 3.48e+01 a.96.1.3,d.129.1.2 91184,91185 2h3bA 494 3.54e+01 1vphA 149 3.55e+01 1vmhA 144 3.55e+01 1tqnA 486 3.59e+01 a.104.1.1 107238 4eugA 229 3.60e+01 3eugA c.18.1.1 31019 1jfrA 262 3.65e+01 1jfrA c.69.1.16 34724 2f4pA 147 3.69e+01 1sefA 274 3.82e+01 b.82.1.11 105452 2cklA 108 3.83e+01 1vq0A 302 3.84e+01 1ihoA 283 3.84e+01 1ihoA c.26.1.4 62390 1zboA 210 3.86e+01 1tz9A 367 3.87e+01 c.1.15.6 107466 1k7hA 476 3.87e+01 c.76.1.1 72101 1suuA 312 3.93e+01 b.68.10.1 99006 1uzxA 169 4.03e+01 d.20.1.2 100238 1qz5A 375 4.05e+01 c.55.1.1,c.55.1.1 96614,96615 1dgfA 497 4.25e+01 1cf9A e.5.1.1 42782 1bs0A 384 4.28e+01 1bs0A c.67.1.4 34490 1oxxK 353 4.30e+01 b.40.6.3,c.37.1.12 93715,93716 2bbkL 125 4.31e+01 2bbkL g.21.1.1 44882 1o9iA 266 4.31e+01 a.25.1.3 92671 1u00A 227 4.31e+01 1kyqA 274 4.33e+01 c.2.1.11,e.37.1.1 73281,73282 1rc6A 261 4.36e+01 b.82.1.11 97287 1ogdA 131 4.37e+01 c.133.1.1 92893 1z4vA 532 4.38e+01 2b5iD 217 4.42e+01 2cxkA 95 4.43e+01 1llmC 88 4.47e+01 g.37.1.1,g.37.1.1 91059,91060 1dl0A 37 4.49e+01 1dl0A g.3.6.2 44112 1oxdA 227 4.69e+01 d.22.1.1 93687 1cqxA 403 4.74e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1t2dA 322 4.77e+01 c.2.1.5,d.162.1.1 99084,99085 2etxA 209 4.78e+01 1iro 54 4.78e+01 1rb9 g.41.5.1 45223 2bwkA 121 4.78e+01 2fxuA 375 4.89e+01 1xhcA 367 4.91e+01 2a97A 439 4.98e+01 1hl2A 297 4.98e+01 c.1.10.1 83581 1guiA 155 5.04e+01 b.18.1.14 76351 1hdlA 55 5.05e+01 g.68.1.2 65808 1xfkA 336 5.09e+01 1ew4A 106 5.13e+01 1ew4A d.82.2.1 40023 1oi6A 205 5.14e+01 b.82.1.1 103940 1nox 205 5.14e+01 1nox d.90.1.1 40242 1eybA 471 5.19e+01 1ey2A b.82.1.4 28115 2eu8A 216 5.23e+01 1cqmA 101 5.25e+01 1ris d.58.14.1 39321 1un3A 123 5.35e+01 d.5.1.1 99646 2a1rA 430 5.35e+01 1wuiS 267 5.36e+01 1p6oA 161 5.36e+01 c.97.1.2 94185 1o12A 376 5.36e+01 b.92.1.5,c.1.9.10 80758,80759 1ng0A 253 5.37e+01 b.121.4.7 80475 1afp 51 5.41e+01 1afp g.26.1.1 44947 1w8kA 447 5.44e+01 2fiyA 309 5.46e+01 1m07A 111 5.56e+01 d.5.1.1 78328 1gpr 162 5.61e+01 1gpr b.84.3.1 28267 1itbB 315 5.62e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1lwdA 413 5.67e+01 c.77.1.1 78265 1sznA 417 5.72e+01 b.71.1.1,c.1.8.1 106162,106163 2h58A 330 5.75e+01 1oyjA 231 5.78e+01 a.45.1.1,c.47.1.5 87597,87598 2dexX 671 5.87e+01 1t0bA 252 5.90e+01 c.23.16.6 106199 1l8dA 112 5.97e+01 h.4.12.1 73687 1gqvA 135 5.98e+01 d.5.1.1 70376 1euvB 86 6.02e+01 1a5r d.15.1.1 37598 1t1jA 125 6.05e+01 c.137.1.1 106249 1z60A 59 6.07e+01 2trxA 108 6.10e+01 1thx c.47.1.1 32719 1ldjB 90 6.23e+01 g.44.1.1 73850 1cl4A 60 6.24e+01 1cl4A g.40.1.1 45171 1sz2A 332 6.26e+01 1q6oA 216 6.31e+01 c.1.2.3 95986 1d0qA 103 6.32e+01 1d0qA g.41.3.2 45208 1ifc 132 6.36e+01 b.60.1.2 27173 1m0gA 30 6.38e+01 g.46.1.1 84743 1cy5A 97 6.38e+01 1cy5A a.77.1.3 18430 2fqaA 27 6.40e+01 1qd1A 325 6.43e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1g9pA 45 6.43e+01 g.3.6.2 65171 1r0uA 148 6.45e+01 b.60.1.5 96741 1fl2A 310 6.55e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 3pmgA 561 6.56e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2aheA 267 6.57e+01 1nepA 130 6.72e+01 b.1.18.7 80440 1m65A 245 6.74e+01 c.6.3.1 84847 1n67A 359 6.81e+01 b.2.3.4,b.2.3.4 85354,85355 1u8zA 168 6.82e+01 1wc2A 181 6.83e+01 1wlsA 328 6.83e+01 1r8nA 185 6.95e+01 b.42.4.1 104851 1jofA 365 7.00e+01 b.69.10.1 71775 1z4rA 168 7.18e+01 1v4pA 157 7.20e+01 1m1qA 91 7.20e+01 a.138.1.3 74419 2fnjA 226 7.25e+01 2f8aA 208 7.32e+01 1vcaA 202 7.33e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1qjpA 171 7.38e+01 1bxwA f.4.1.1 43742 1eajA 126 7.54e+01 1f5wA b.1.1.1 59401 1wr8A 231 7.58e+01 1n6zA 105 7.60e+01 d.263.1.1 85369 1o7eA 276 7.60e+01 e.3.1.1 92622 1f0lA 535 7.60e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1b8oA 284 7.70e+01 1b8oA c.56.2.1 33762 2ctdA 96 7.70e+01 1wraA 308 7.72e+01 1qo3C 137 7.73e+01 1qo3C d.169.1.1 42350 1rh6A 55 7.81e+01 a.6.1.7 104935 1wf3A 301 7.82e+01 1neeA 138 7.83e+01 d.241.1.1,g.59.1.1 91841,91842 2a23A 82 7.86e+01 1ykjA 394 7.97e+01 1f3lA 321 8.02e+01 1g6q2 c.66.1.6 59630 2cjsC 62 8.03e+01 1v54D 147 8.04e+01 f.23.1.1 100325 1r8oB 71 8.05e+01 1z06A 189 8.11e+01 2bogX 286 8.21e+01 1lniA 96 8.27e+01 d.1.1.2 74046 1zxq 192 8.34e+01 1zxq b.1.1.3,b.1.1.4 21657,21693 1kdj 102 8.39e+01 1plc b.6.1.1 22864 1xi7A 61 8.50e+01 2awkA 228 8.51e+01 1yfnA 118 8.51e+01 1uesA 191 8.60e+01 a.2.11.1,d.44.1.1 107798,107799 1vl2A 421 8.66e+01 c.26.2.1,d.210.1.1 108708,108709 1vrmA 325 8.68e+01 2g09A 297 8.69e+01 1uy4A 145 8.70e+01 b.18.1.10 108131 1y9uA 323 8.74e+01 1zud1 251 8.74e+01 1j0pA 108 8.83e+01 a.138.1.1 90743 1ejxA 100 8.83e+01 d.8.1.1 83182 2b18A 164 8.85e+01 1yphE 97 8.87e+01 2ezvA 269 8.94e+01 1ysjA 404 8.94e+01 1hruA 188 8.94e+01 1hruA d.115.1.1 40926 1xd3A 230 8.97e+01 2anxA 146 8.97e+01