# List of top-scoring protein chains for t06-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2awpA 198 6.25e-01 1lurA 339 1.11e+00 b.30.5.4 84717 1y9wA 140 1.68e+00 1wc2A 181 3.44e+00 1rc6A 261 3.49e+00 b.82.1.11 97287 1pixA 587 3.72e+00 c.14.1.4 94708 1vckA 115 3.77e+00 1eu1A 780 4.14e+00 1dmr b.52.2.2,c.81.1.1 26903,35311 1k0mA 241 4.51e+00 a.45.1.1,c.47.1.5 67949,67950 1uteA 313 4.87e+00 1uteA d.159.1.1 42078 2d0iA 333 5.08e+00 1ooyA 481 5.56e+00 c.124.1.3,c.124.1.2 93388,93389 1xqwA 293 5.92e+00 1n62B 809 6.08e+00 d.41.1.1,d.133.1.1 80092,80093 1j1lA 290 6.11e+00 b.82.1.12 90766 1id1A 153 6.65e+00 1id1A c.2.1.9 62286 2fimA 276 7.15e+00 1c30B 382 7.21e+00 c.8.3.1,c.23.16.1 30736,31413 1ynfA 458 7.28e+00 2cy2A 174 7.34e+00 2bdvA 231 7.68e+00 1vqoZ 83 7.69e+00 1v4pA 157 7.73e+00 1o7eA 276 1.01e+01 e.3.1.1 92622 1mtzA 293 1.09e+01 c.69.1.7 79467 1qksA 567 1.10e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 2bb6A 414 1.10e+01 1wiwA 290 1.18e+01 1qg3A 195 1.18e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 1wfxA 186 1.26e+01 1ykdA 398 1.27e+01 1efdN 266 1.30e+01 1efdN c.92.2.1 35597 1tz9A 367 1.30e+01 c.1.15.6 107466 1woyA 500 1.32e+01 1vk6A 269 1.33e+01 d.113.1.4,d.113.1.4 100851,100852 1dgwA 178 1.33e+01 1dgwA b.82.1.2 28090 1w9aA 147 1.39e+01 1k6dA 220 1.41e+01 c.124.1.2 72082 1ww8A 439 1.42e+01 2aq5A 402 1.45e+01 1qhtA 775 1.54e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1s6bA 119 1.55e+01 a.133.1.2 98592 2ct7A 86 1.55e+01 1mswD 883 1.58e+01 e.8.1.3 79427 1p4kA 295 1.59e+01 d.153.1.5 87772 2bllA 345 1.61e+01 2aheA 267 1.63e+01 2afwA 329 1.68e+01 1n0uA 842 1.69e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 2bwrA 401 1.73e+01 1jfrA 262 1.76e+01 1jfrA c.69.1.16 34724 1olzA 663 1.77e+01 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1rgyA 360 1.79e+01 e.3.1.1 97456 1qopB 396 1.86e+01 2tysB c.79.1.1 35270 1e1hB 174 1.87e+01 1q33A 292 1.94e+01 d.113.1.1 95657 1cyx 205 1.95e+01 1cyx b.6.1.2 23023 1q35A 320 1.98e+01 c.94.1.1 95661 2cn3A 737 1.98e+01 1odhA 174 2.03e+01 d.239.1.1 86850 1w2wB 191 2.03e+01 2f8lA 344 2.09e+01 1dl0A 37 2.13e+01 1dl0A g.3.6.2 44112 1g4iA 123 2.17e+01 1poa a.133.1.2 60241 1wd2A 60 2.21e+01 g.44.1.1 109232 3vub 101 2.24e+01 3vub b.34.6.1 24613 1wrvA 308 2.24e+01 1vkdA 338 2.28e+01 b.67.2.4 108644 1gweA 503 2.29e+01 e.5.1.1 70667 3eipA 84 2.31e+01 3eipA d.26.2.1 38434 2aaoA 166 2.31e+01 1qh4A 380 2.40e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1jm1A 204 2.44e+01 b.33.1.1 71745 2anxA 146 2.53e+01 1vprA 374 2.64e+01 2basA 431 2.67e+01 2fflA 756 2.70e+01 1ia6A 441 2.82e+01 a.102.1.2 76738 1h12A 405 2.83e+01 a.102.1.2 83447 2aq6A 147 2.88e+01 1txuA 273 2.91e+01 a.222.1.1 107439 1dxsA 80 2.92e+01 1cokA a.60.1.2 17944 1u04A 771 2.94e+01 b.34.14.1,c.55.3.10 107539,107540 1pjr 724 2.98e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1gvjA 146 2.99e+01 a.4.5.21 90525 2fqpA 97 3.06e+01 1y7bA 542 3.07e+01 1ri6A 343 3.11e+01 b.69.11.1 97503 1kmoA 774 3.12e+01 f.4.3.3 72753 1ifqA 138 3.12e+01 1ifqA d.110.4.1 62350 1xd3A 230 3.12e+01 1kw3B 292 3.16e+01 d.32.1.3,d.32.1.3 77549,77550 1ogdA 131 3.17e+01 c.133.1.1 92893 1vk4A 298 3.21e+01 c.72.1.1 100850 1z2kA 109 3.34e+01 1cojA 212 3.48e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2gu3A 136 3.52e+01 2exrA 524 3.53e+01 1j1bA 420 3.61e+01 d.144.1.7 90758 1nr0A 611 3.62e+01 b.69.4.1,b.69.4.1 86078,86079 1uy4A 145 3.66e+01 b.18.1.10 108131 1t3qB 788 3.73e+01 d.41.1.1,d.133.1.1 106369,106370 1kblA 873 3.75e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 2bce 581 3.78e+01 2bce c.69.1.1 34625 1vavA 222 3.86e+01 b.29.1.18 108472 1z6uA 150 3.88e+01 1oyjA 231 3.90e+01 a.45.1.1,c.47.1.5 87597,87598 1zm8A 259 3.92e+01 1ur6B 52 3.99e+01 g.44.1.1 99812 1g8kB 133 4.01e+01 1g8jB b.33.1.1 24435 1dgfA 497 4.05e+01 1cf9A e.5.1.1 42782 1ecfA 504 4.11e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1yspA 181 4.17e+01 1qznA 173 4.18e+01 b.2.2.2 104669 1xl7A 612 4.18e+01 1se8A 301 4.34e+01 b.40.4.3 105448 1w9pA 433 4.35e+01 1yd0A 96 4.35e+01 1lvoA 302 4.38e+01 b.47.1.4 74284 1pj5A 830 4.48e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1k8kA 418 4.48e+01 c.55.1.1,c.55.1.1 68305,68306 1r6vA 671 4.53e+01 1w8oA 601 4.54e+01 1x9pA 523 4.57e+01 2d0oA 610 4.69e+01 1r6lA 239 4.93e+01 d.14.1.4,d.101.1.1 97153,97154 1tjlA 151 4.94e+01 a.2.14.1,g.39.1.13 107027,107028 1uesA 191 5.03e+01 a.2.11.1,d.44.1.1 107798,107799 1wr8A 231 5.13e+01 1ugmA 125 5.14e+01 d.15.1.3 107827 1gppA 237 5.15e+01 b.86.1.2 76262 1ptq 50 5.16e+01 1ptq g.49.1.1 45349 1qtwA 285 5.20e+01 1qumA c.1.15.1 29392 1xnzA 264 5.22e+01 1inp 400 5.22e+01 1inp e.7.1.1 42972 1vd5A 377 5.25e+01 a.102.1.7 108518 1vb5A 276 5.28e+01 1k4iA 233 5.31e+01 d.115.1.2 72056 1to6A 371 5.33e+01 c.141.1.1 107170 1oihA 301 5.35e+01 b.82.2.5 93051 2absA 383 5.35e+01 1yk4A 52 5.38e+01 1qo7A 394 5.50e+01 1qo7A c.69.1.11 34697 2g39A 497 5.53e+01 1rlyA 60 5.54e+01 g.41.3.1 104988 1gefA 123 5.58e+01 1gefA c.52.1.18 60465 2f4eA 180 5.63e+01 1yymG 313 5.78e+01 1q7fA 286 5.80e+01 b.68.9.1 96036 1t0bA 252 5.93e+01 c.23.16.6 106199 1szqA 483 6.04e+01 e.44.1.1 99045 1zbpA 273 6.07e+01 2h1tA 188 6.23e+01 1wp5A 323 6.24e+01 1vns 609 6.25e+01 1vns a.111.1.3 19061 1hr6A 475 6.32e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 2gw2A 198 6.34e+01 1h09A 338 6.49e+01 b.109.1.1,c.1.8.8 83420,83421 1w27A 714 6.56e+01 2a6hC 1119 6.58e+01 1gwuA 309 6.60e+01 a.93.1.1 83351 1m2tB 263 6.64e+01 b.42.2.1,b.42.2.1 84762,84763 1ti6A 875 6.64e+01 b.52.2.2,c.81.1.1 106974,106975 1rwiA 270 6.73e+01 b.68.9.1 97987 2c07A 285 6.78e+01 1iv3A 152 6.79e+01 d.79.5.1 76828 1v1aA 309 6.86e+01 c.72.1.1 100249 2aamA 309 6.95e+01 1hy7A 173 6.96e+01 d.92.1.11 65957 1l8dA 112 7.13e+01 h.4.12.1 73687 2c3vA 102 7.16e+01 1yliA 153 7.20e+01 1kv7A 488 7.21e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1wkrA 340 7.25e+01 b.50.1.2 109395 1te0A 318 7.31e+01 1erjA 393 7.31e+01 1erjA b.69.4.1 27660 1s95A 333 7.31e+01 d.159.1.3 105375 1cv8 174 7.34e+01 1cv8 d.3.1.1 37089 1w0dA 337 7.35e+01 1fl0A 171 7.41e+01 1eujA b.40.4.4 25315 1s0aA 429 7.46e+01 c.67.1.4 98263 1h0hA 977 7.48e+01 b.52.2.2,c.81.1.1 76435,76436 1hdhA 536 7.51e+01 c.76.1.2 65805 1jr7A 311 7.52e+01 b.82.2.3 63255 1yopA 83 7.57e+01 1m7sA 484 7.58e+01 e.5.1.1 74574 1gteA 1025 7.59e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1z52A 470 7.60e+01 1p2hA 571 7.62e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1wkuA 254 7.74e+01 1ewkA 490 7.74e+01 1ewkA c.93.1.1 35712 1y42X 392 7.77e+01 1f0kA 364 7.79e+01 1f0kA c.87.1.2 35465 1ywmA 200 7.88e+01 1p57A 114 7.98e+01 d.170.1.2 94125 2culA 232 8.00e+01 1o6lA 337 8.06e+01 d.144.1.7 81092 1qj4A 257 8.07e+01 1qj4A c.69.1.20 34796 1wwcA 118 8.19e+01 1wwcA b.1.1.4 21778 1wthD 391 8.22e+01 1ywzA 175 8.26e+01 1cs0A 1073 8.37e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1d0cA 444 8.43e+01 d.174.1.1 64769 1nthA 458 8.43e+01 c.1.25.1 80730 1a78A 134 8.52e+01 1c1lA b.29.1.3 24212 2ffyA 358 8.52e+01 2axtB 510 8.59e+01 4bcl 366 8.62e+01 4bcl b.75.1.1 27968 1ypvA 313 8.66e+01 2a20A 62 8.81e+01 2an1A 292 8.82e+01 1wu4A 396 8.83e+01 1l6rA 227 8.88e+01 c.108.1.10 77768 1erd 40 8.91e+01 1erd a.10.1.1 16362