# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ct7A 86 1.80e-01 1vckA 115 8.54e-01 1vqoZ 83 1.03e+00 1s72Z 73 1.09e+00 g.41.8.1 105345 2fqpA 97 1.19e+00 1vd4A 62 1.61e+00 1ur6B 52 2.01e+00 g.44.1.1 99812 1vk6A 269 2.43e+00 d.113.1.4,d.113.1.4 100851,100852 2a20A 62 2.79e+00 1lm5A 214 3.03e+00 d.211.2.1 74029 1odhA 174 3.07e+00 d.239.1.1 86850 1ww8A 439 3.48e+00 1ywzA 175 3.76e+00 1wd2A 60 4.11e+00 g.44.1.1 109232 2bwfA 77 4.44e+00 1dl6A 58 4.55e+00 1dl6A g.41.3.1 45207 1zy1B 197 4.61e+00 1rlyA 60 4.74e+00 g.41.3.1 104988 1hvyA 288 4.74e+00 1bkpA d.117.1.1 41049 2g8oA 264 5.11e+00 2g8mA 264 5.31e+00 1w0uA 55 5.68e+00 1dgfA 497 5.69e+00 1cf9A e.5.1.1 42782 2cjsC 62 5.69e+00 1oapA 109 5.92e+00 d.79.7.1 92706 1evfA 264 6.11e+00 1bkpA d.117.1.1 40932 1fiqB 350 6.52e+00 1fiqB d.87.2.1,d.145.1.3 40229,41760 1z60A 59 6.56e+00 1fsoA 139 6.65e+00 1rhoA b.1.18.8 60007 2a8mA 420 6.73e+00 1qqqA 264 6.90e+00 1bkpA d.117.1.1 40931 830cA 168 6.97e+00 1ck7A d.92.1.11 40400 1kmtA 141 6.97e+00 b.1.18.8 77442 2a1rA 430 7.03e+00 2a8jA 420 7.34e+00 1vq0A 302 8.02e+00 1bc8C 93 8.32e+00 1awcA a.4.5.21 16168 1wfeA 86 8.81e+00 1erd 40 9.38e+00 1erd a.10.1.1 16362 1lv3A 68 9.49e+00 g.39.1.9 78231 1l8dA 112 9.56e+00 h.4.12.1 73687 1tg6A 277 9.73e+00 2fvhA 120 9.80e+00 1l1oC 181 9.92e+00 b.40.4.3 73480 1ejxA 100 1.04e+01 d.8.1.1 83182 1jj2Y 73 1.10e+01 1ffkW g.41.8.1 63110 2g2kA 170 1.16e+01 1rb9 53 1.17e+01 1rb9 g.41.5.1 45214 1ee8A 266 1.25e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1yk4A 52 1.34e+01 1i76A 163 1.38e+01 1hfc d.92.1.11 61877 1us5A 314 1.42e+01 c.94.1.1 99856 1tr9A 341 1.49e+01 1fl2A 310 1.54e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1xg1A 67 1.54e+01 2sak 121 1.55e+01 2sak d.15.5.1 37711 1ypvA 313 1.56e+01 1zxzA 197 1.56e+01 4ubpA 101 1.59e+01 1ubpA d.8.1.1 37352 1v87A 114 1.63e+01 g.44.1.1 108422 2dasA 62 1.64e+01 1pkhA 204 1.65e+01 b.85.4.1 94832 1z6uA 150 1.66e+01 1y88A 199 1.72e+01 1i50L 70 1.85e+01 g.41.9.2 61766 1jm1A 204 1.86e+01 b.33.1.1 71745 1rdg 53 1.91e+01 1rb9 g.41.5.1 45221 1poc 134 1.95e+01 1poc a.133.1.1 19513 1wgeA 83 1.95e+01 1d4xA 375 1.97e+01 1yagA c.55.1.1,c.55.1.1 59107,59108 1xd3A 230 2.02e+01 1yl35 60 2.02e+01 1kdj 102 2.08e+01 1plc b.6.1.1 22864 1qxfA 66 2.10e+01 g.41.8.4 96527 1rutX 188 2.11e+01 2ezvA 269 2.13e+01 1afp 51 2.13e+01 1afp g.26.1.1 44947 1iro 54 2.16e+01 1rb9 g.41.5.1 45223 1d0qA 103 2.22e+01 1d0qA g.41.3.2 45208 1p32A 209 2.26e+01 1p32A d.25.1.1 38379 1w27A 714 2.32e+01 1t1jA 125 2.32e+01 c.137.1.1 106249 1wjpA 107 2.40e+01 1a04A 215 2.47e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1dgaA 375 2.49e+01 1yagA 1v32A 101 2.55e+01 a.42.1.1 100277 1ifqA 138 2.55e+01 1ifqA d.110.4.1 62350 2airB 153 2.63e+01 1sp1 29 2.70e+01 g.37.1.1 45051 1exkA 79 2.73e+01 1exkA g.54.1.1 45384 1mr1C 99 2.73e+01 d.217.1.2 79420 1zsqA 528 2.74e+01 1xakA 83 2.78e+01 1ayoA 130 2.81e+01 1ayoA b.2.4.1 22431 2ct5A 73 2.84e+01 2avuE 192 2.86e+01 1twfL 70 2.91e+01 1d09B 153 2.94e+01 8atcB d.58.2.1,g.41.7.1 39015,45267 1vor2 58 2.94e+01 1mea 28 2.95e+01 g.41.1.1 45176 1m1qA 91 2.98e+01 a.138.1.3 74419 2aq4A 434 3.06e+01 1e53A 59 3.11e+01 1e53A g.49.1.2 45356 1u79A 129 3.14e+01 d.26.1.1 107714 1uch 230 3.20e+01 1uch d.3.1.6 37129 1uufA 369 3.21e+01 b.35.1.2,c.2.1.1 100006,100007 1dxgA 36 3.24e+01 1dxgA g.41.5.2 45247 1a7i 81 3.36e+01 1b8tA g.39.1.3,g.39.1.3 45143,45144 1z1zA 131 3.41e+01 1wijA 140 3.45e+01 2bx9A 53 3.50e+01 1weoA 93 3.52e+01 1hyuA 521 3.64e+01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1k3eA 156 3.65e+01 d.198.1.1 68103 1lw3A 657 3.67e+01 b.55.1.8,c.45.1.3 91152,91153 2a8lA 420 3.67e+01 2fe5A 94 3.75e+01 1wjvA 79 3.80e+01 1so2A 420 3.84e+01 a.211.1.2 98936 1vzyA 291 3.86e+01 1gmxA 108 3.86e+01 c.46.1.3 65355 1p6pA 125 3.86e+01 b.60.1.2 87839 1wuaA 375 3.87e+01 1sur 215 3.88e+01 1sur c.26.2.2 31620 1o12A 376 4.03e+01 b.92.1.5,c.1.9.10 80758,80759 1bq9A 54 4.08e+01 1rb9 g.41.5.1 45238 1nx8A 273 4.09e+01 b.82.2.8 86374 1qlnA 883 4.11e+01 1cezA e.8.1.3 43111 1scuA 288 4.15e+01 2scuA c.2.1.8,c.23.4.1 30307,31135 1x75A 132 4.20e+01 1brfA 53 4.27e+01 1rb9 g.41.5.1 45236 1bfg 146 4.35e+01 1bfg b.42.1.1 25485 1q35A 320 4.46e+01 c.94.1.1 95661 1hdlA 55 4.49e+01 g.68.1.2 65808 1zu1A 127 4.55e+01 2d1uA 104 4.62e+01 1fo4A 1332 4.73e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 17910,37695,38586,40227,41416,41758 1qz5A 375 4.74e+01 c.55.1.1,c.55.1.1 96614,96615 1nigA 152 4.77e+01 a.25.2.1 85740 1i88A 389 4.81e+01 c.95.1.2,c.95.1.2 66070,66071 1xesA 413 4.98e+01 2fxuA 375 5.05e+01 1t0bA 252 5.07e+01 c.23.16.6 106199 1mswD 883 5.09e+01 e.8.1.3 79427 1shuX 182 5.17e+01 c.62.1.1 98882 1fiuA 286 5.18e+01 1fiuA c.52.1.10 33317 6rxn 46 5.30e+01 1rb9 g.41.5.1 45222 2gatA 66 5.41e+01 1gatA g.39.1.1 45102 1a7cA 379 5.49e+01 1sek e.1.1.1 42660 1erjA 393 5.51e+01 1erjA b.69.4.1 27660 1nykA 165 5.62e+01 b.33.1.1 86408 1ptq 50 5.65e+01 1ptq g.49.1.1 45349 1xbfA 140 5.68e+01 d.273.1.1 109538 1xdfA 157 5.73e+01 1j6zA 376 5.80e+01 1yagA c.55.1.1,c.55.1.1 62667,62668 1yc5A 246 5.82e+01 2cklB 165 6.03e+01 1wer 334 6.18e+01 1wer a.116.1.2 19108 1vphA 149 6.26e+01 1lj5A 379 6.40e+01 e.1.1.1 73928 2btfA 375 6.50e+01 1yagA c.55.1.1,c.55.1.1 33429,33430 1y9uA 323 6.75e+01 1ywsA 82 6.91e+01 1gvjA 146 6.97e+01 a.4.5.21 90525 1aihA 170 6.97e+01 1aihA d.163.1.1 42149 1w33A 181 7.04e+01 1pieA 419 7.04e+01 d.14.1.5,d.58.26.7 94706,94707 2d8vA 67 7.06e+01 1m0gA 30 7.31e+01 g.46.1.1 84743 1s9rA 410 7.36e+01 d.126.1.4 98758 2fiyA 309 7.66e+01 3pmgA 561 7.74e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1a78A 134 7.77e+01 1c1lA b.29.1.3 24212 1qvbA 481 7.98e+01 1qvbA c.1.8.4 28983 1jfrA 262 8.06e+01 1jfrA c.69.1.16 34724 1ek9A 428 8.25e+01 1ek9A f.5.1.1 43809 1q33A 292 8.26e+01 d.113.1.1 95657 2d1pB 119 8.26e+01 1cbs 137 8.41e+01 1hmt b.60.1.2 27201 1uh6A 100 8.58e+01 d.15.1.1 99394 1nv8A 284 8.65e+01 c.66.1.30 86224 2adoA 196 8.78e+01 1yuiA 54 8.86e+01 1yuiA g.37.1.1 45073 2chnA 716 9.00e+01