# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s72Z 73 1.13e-01 g.41.8.1 105345 1vqoZ 83 1.23e-01 2ct7A 86 3.03e-01 1jj2Y 73 1.29e+00 1ffkW g.41.8.1 63110 1y9wA 140 1.69e+00 1vk6A 269 1.77e+00 d.113.1.4,d.113.1.4 100851,100852 1vckA 115 1.97e+00 1odhA 174 2.10e+00 d.239.1.1 86850 1ww8A 439 2.21e+00 1hvyA 288 2.49e+00 1bkpA d.117.1.1 41049 2g2kA 170 3.54e+00 1wd2A 60 3.84e+00 g.44.1.1 109232 1rlyA 60 4.23e+00 g.41.3.1 104988 1ypvA 313 4.71e+00 1qvbA 481 4.77e+00 1qvbA c.1.8.4 28983 1dl6A 58 5.12e+00 1dl6A g.41.3.1 45207 1mswD 883 6.29e+00 e.8.1.3 79427 1adn 92 6.43e+00 1adn g.48.1.1 45348 1wrvA 308 6.77e+00 1wpkA 146 7.46e+00 1zgwA 139 7.87e+00 2a8mA 420 8.86e+00 1x75A 132 9.08e+00 1qxfA 66 9.10e+00 g.41.8.4 96527 1z4rA 168 9.43e+00 1jm1A 204 9.47e+00 b.33.1.1 71745 1theA 260 9.86e+00 1theB d.3.1.1 37056 1yk4A 52 1.08e+01 1n9dA 199 1.08e+01 a.26.1.1 85464 1l1oC 181 1.14e+01 b.40.4.3 73480 1ee8A 266 1.22e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1evfA 264 1.31e+01 1bkpA d.117.1.1 40932 2aq4A 434 1.34e+01 2g8mA 264 1.45e+01 1qqqA 264 1.46e+01 1bkpA d.117.1.1 40931 1xxoA 147 1.51e+01 1w9aA 147 1.53e+01 1exkA 79 1.59e+01 1exkA g.54.1.1 45384 1ptq 50 1.64e+01 1ptq g.49.1.1 45349 2a8jA 420 1.68e+01 1d0qA 103 1.69e+01 1d0qA g.41.3.2 45208 1k3eA 156 1.75e+01 d.198.1.1 68103 1yovA 537 1.76e+01 1neeA 138 1.78e+01 d.241.1.1,g.59.1.1 91841,91842 1bc8C 93 1.83e+01 1awcA a.4.5.21 16168 1tz9A 367 1.90e+01 c.1.15.6 107466 1r6lA 239 1.92e+01 d.14.1.4,d.101.1.1 97153,97154 1k7cA 233 1.92e+01 c.23.10.4 68267 1dl0A 37 1.98e+01 1dl0A g.3.6.2 44112 1rb9 53 2.00e+01 1rb9 g.41.5.1 45214 2aq6A 147 2.01e+01 2g8yA 385 2.10e+01 1deoA 233 2.12e+01 1deoA c.23.10.4 31345 1dgfA 497 2.12e+01 1cf9A e.5.1.1 42782 2a1rA 430 2.15e+01 2kfnA 605 2.18e+01 1xwl c.55.3.5,e.8.1.1 33682,42975 2g8oA 264 2.19e+01 1ywzA 175 2.30e+01 2fqpA 97 2.31e+01 2sak 121 2.39e+01 2sak d.15.5.1 37711 1iro 54 2.44e+01 1rb9 g.41.5.1 45223 1fp0A 88 2.52e+01 1fp0A g.50.1.2 45361 1utyA 187 2.55e+01 b.147.1.1 108036 1cojA 212 2.56e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1sp1 29 2.64e+01 g.37.1.1 45051 1kmtA 141 2.66e+01 b.1.18.8 77442 1ogdA 131 2.72e+01 c.133.1.1 92893 1fsoA 139 2.75e+01 1rhoA b.1.18.8 60007 1nx8A 273 2.78e+01 b.82.2.8 86374 1e53A 59 2.78e+01 1e53A g.49.1.2 45356 1vd4A 62 2.78e+01 1jfrA 262 2.84e+01 1jfrA c.69.1.16 34724 1rdg 53 2.90e+01 1rb9 g.41.5.1 45221 2bx9A 53 2.92e+01 1plq 258 2.92e+01 1plq d.131.1.2,d.131.1.2 41388,41389 1ur6B 52 2.93e+01 g.44.1.1 99812 1m22A 503 2.93e+01 c.117.1.1 78464 1qlnA 883 3.00e+01 1cezA e.8.1.3 43111 1t0bA 252 3.02e+01 c.23.16.6 106199 1zzpA 130 3.19e+01 1v87A 114 3.22e+01 g.44.1.1 108422 1dxgA 36 3.34e+01 1dxgA g.41.5.2 45247 1vor2 58 3.49e+01 1bq9A 54 3.49e+01 1rb9 g.41.5.1 45238 1brfA 53 3.54e+01 1rb9 g.41.5.1 45236 1ty9A 222 3.55e+01 1i76A 163 3.59e+01 1hfc d.92.1.11 61877 830cA 168 3.64e+01 1ck7A d.92.1.11 40400 1jgsA 138 3.71e+01 a.4.5.28 66683 2aw2B 108 3.72e+01 2dasA 62 3.80e+01 2cjsC 62 3.81e+01 1p5vA 235 3.87e+01 b.1.11.1,b.7.2.1 87812,87813 1yc5A 246 3.90e+01 1qbjA 81 3.90e+01 1qbjA a.4.5.19 16155 2a20A 62 3.93e+01 1zu0A 529 3.94e+01 1ifqA 138 3.96e+01 1ifqA d.110.4.1 62350 1wfeA 86 4.00e+01 1yl35 60 4.10e+01 2awpA 198 4.28e+01 1uby 367 4.28e+01 1uby a.128.1.1 19435 1gp1A 198 4.31e+01 1gp1A c.47.1.10 33059 1qstA 160 4.36e+01 1yghA d.108.1.1 40804 1lm5A 214 4.37e+01 d.211.2.1 74029 1zpuA 534 4.43e+01 1tr9A 341 4.46e+01 1vq0A 302 4.52e+01 1mea 28 4.55e+01 g.41.1.1 45176 1inp 400 4.64e+01 1inp e.7.1.1 42972 1wijA 140 4.67e+01 1l8dA 112 4.76e+01 h.4.12.1 73687 1q68B 29 4.86e+01 j.108.1.1 95963 1i50I 122 4.89e+01 g.41.3.1,g.41.3.1 61762,61763 2acjA 66 4.92e+01 2c1xA 456 4.97e+01 1qz5A 375 5.21e+01 c.55.1.1,c.55.1.1 96614,96615 2cklB 165 5.35e+01 1z6uA 150 5.37e+01 1pfvA 551 5.43e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1f4lA 551 5.44e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 1gmyA 261 5.44e+01 d.3.1.1 76236 1p6pA 125 5.48e+01 b.60.1.2 87839 1j6zA 376 5.48e+01 1yagA c.55.1.1,c.55.1.1 62667,62668 1qwtA 255 5.58e+01 b.26.1.3 96501 1hn6A 110 5.63e+01 g.61.1.1 76721 1ab4 477 5.64e+01 1ab4 e.11.1.1 43251 1r5mA 425 5.67e+01 1p32A 209 5.80e+01 1p32A d.25.1.1 38379 6rxn 46 5.89e+01 1rb9 g.41.5.1 45222 1twfI 122 5.92e+01 1u24A 337 5.92e+01 1wwcA 118 5.99e+01 1wwcA b.1.1.4 21778 1hw5A 210 6.11e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 4eugA 229 6.17e+01 3eugA c.18.1.1 31019 1uv4A 293 6.25e+01 1mr1C 99 6.27e+01 d.217.1.2 79420 1hyeA 313 6.33e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1u8bA 133 6.35e+01 1ys4A 354 6.38e+01 1yub 245 6.41e+01 2ercA c.66.1.24 34219 1q35A 320 6.43e+01 c.94.1.1 95661 1zyoA 191 6.52e+01 2cklA 108 6.54e+01 1q33A 292 6.54e+01 d.113.1.1 95657 1wc2A 181 6.57e+01 1zx2A 147 6.64e+01 2a9fA 398 6.70e+01 1sur 215 6.79e+01 1sur c.26.2.2 31620 7taa 478 6.80e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1m3vA 122 6.87e+01 g.39.1.3,g.39.1.3 84794,84795 2avuE 192 6.91e+01 2fxuA 375 6.96e+01 3daaA 277 7.03e+01 1daaA e.17.1.1 43272 2f8aA 208 7.05e+01 1m2kA 249 7.18e+01 c.31.1.5 84754 1cv8 174 7.28e+01 1cv8 d.3.1.1 37089 2fqaA 27 7.35e+01 1i1kA 309 7.36e+01 1daaA e.17.1.1 61533 2aaa 484 7.41e+01 7taa b.71.1.1,c.1.8.1 27777,28764 2fpeA 62 7.44e+01 1iyeA 309 7.50e+01 e.17.1.1 83786 1wjpA 107 7.57e+01 1a78A 134 7.72e+01 1c1lA b.29.1.3 24212 2gatA 66 7.72e+01 1gatA g.39.1.1 45102 1nox 205 7.77e+01 1nox d.90.1.1 40242 2aegA 268 7.88e+01 1jx4A 352 7.94e+01 d.240.1.1,e.8.1.7 90378,90379 1sfp 114 8.04e+01 1sfp b.23.1.1 23895 1i50L 70 8.07e+01 g.41.9.2 61766 1dgaA 375 8.14e+01 1yagA 1k0mA 241 8.17e+01 a.45.1.1,c.47.1.5 67949,67950 1u2xA 474 8.23e+01 c.72.1.3 107622 1d4xA 375 8.41e+01 1yagA c.55.1.1,c.55.1.1 59107,59108 1juvA 193 8.55e+01 c.71.1.1 90912 2cxkA 95 8.65e+01 1c28A 135 8.69e+01 1c28A b.22.1.1 23857 1hi2A 135 8.73e+01 7rsa d.5.1.1 61057 1jb0F 164 8.87e+01 1jb0F f.23.16.1 62825 2bbkL 125 8.88e+01 2bbkL g.21.1.1 44882 1iupA 282 8.98e+01 c.69.1.10 76815 1uk8A 282 8.99e+01 c.69.1.10 107907