# List of top-scoring protein chains for T0347.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vk1A 242 1.78e+00 d.268.1.2 108634 1xhnA 184 1.14e+01 1vloA 381 1.15e+01 b.44.2.1,d.250.1.1 108838,108839 1gawA 314 1.76e+01 1fnc b.43.4.2,c.25.1.1 25643,31533 1ne7A 289 1.99e+01 c.124.1.1 91833 2ffhA 425 2.34e+01 1ng1 a.24.13.1,a.36.1.1,c.37.1.10 16965,17122,32276 1vlqA 337 2.37e+01 c.69.1.25 108848 1d09A 310 2.50e+01 3csuA c.78.1.1,c.78.1.1 35100,35101 1qfzA 308 2.66e+01 1fnc b.43.4.2,c.25.1.1 25633,31523 1f1bA 310 2.67e+01 3csuA c.78.1.1,c.78.1.1 35104,35105 1qgaA 308 2.67e+01 1fnc b.43.4.2,c.25.1.1 25637,31527 1qg0A 308 2.68e+01 1fnc b.43.4.2,c.25.1.1 25639,31529 1tugA 310 2.70e+01 c.78.1.1 107339 1gq3A 310 2.74e+01 c.78.1.1,c.78.1.1 76268,76269 1skuA 310 2.75e+01 c.78.1.1,c.78.1.1 98902,98903 3csuA 310 2.76e+01 3csuA c.78.1.1,c.78.1.1 35094,35095 1ekxA 311 2.76e+01 3csuA c.78.1.1,c.78.1.1 35088,35089 2a0fA 310 2.76e+01 1dot 686 2.81e+01 1nnt c.94.1.2,c.94.1.2 35876,35877 1jb0B 740 2.86e+01 1jb0A f.29.1.1 62821 1kr0A 273 2.91e+01 c.1.8.5 68845 1sm4A 296 2.97e+01 b.43.4.2,c.25.1.1 98913,98914 1o6dA 163 3.01e+01 c.116.1.3 92567 1nnhA 294 3.05e+01 d.104.1.1 92005 1yj5A 383 3.10e+01 1frn 314 3.15e+01 1fnc b.43.4.2,c.25.1.1 25631,31521 9atcA 310 3.26e+01 3csuA c.78.1.1,c.78.1.1 35188,35189 8atcA 310 3.28e+01 3csuA c.78.1.1,c.78.1.1 35132,35133 1acmA 310 3.28e+01 3csuA c.78.1.1,c.78.1.1 35180,35181 1u46A 291 3.34e+01 d.144.1.7 107656 1bx1A 314 3.53e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1frqA 314 3.53e+01 1fnc b.43.4.2,c.25.1.1 25632,31522 1bx0A 314 3.53e+01 1fnc b.43.4.2,c.25.1.1 25630,31520 1u54A 291 3.56e+01 d.144.1.7 107675 2atcA 305 3.57e+01 3csuA c.78.1.1,c.78.1.1 35194,35195 1fnd 314 3.62e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1ir1S 123 3.63e+01 d.73.1.1 71290 1ye9A 226 3.83e+01 1sogA 294 3.86e+01 a.93.1.1 105844 1kqzA 273 3.97e+01 c.1.8.5 68844 1kr1A 273 4.04e+01 c.1.8.5 68846 1stqA 294 4.12e+01 a.93.1.1 106008 1xb4A 202 4.14e+01 1s2oA 244 4.51e+01 1hzgA 295 4.56e+01 1hzgA d.194.1.1 61436 1hq0A 295 4.56e+01 1hzgA d.194.1.1 61122 1fc4A 401 4.69e+01 1bs0A c.67.1.4 59760 1i10A 331 5.18e+01 3ldh c.2.1.5,d.162.1.1 61499,61500 1xkqA 280 5.24e+01 2ffjA 300 5.26e+01 1jciA 294 5.27e+01 a.93.1.1 71632 1jdrA 294 5.49e+01 1ryc a.93.1.1 62908 1tsjA 139 5.57e+01 2g0wA 296 6.11e+01 8rucI 123 6.35e+01 1rboC d.73.1.1 39629 2cuaA 135 6.47e+01 2cuaA b.6.1.2 23039 2fwlB 136 6.50e+01 1qezA 173 6.76e+01 2prd b.40.5.1 25410 2hhmA 276 6.79e+01 1imbA e.7.1.1 42955 1imbA 277 6.80e+01 1imbA e.7.1.1 42957 1xmeB 168 7.09e+01 1rqgA 722 7.26e+01 a.27.1.1,c.26.1.1,g.41.1.1 105063,105064,105065 2h16A 183 7.32e+01 2fxqA 264 7.71e+01 2avyB 240 7.77e+01 2f6uA 234 7.88e+01 1fiqC 763 8.32e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1i19A 561 8.60e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 2ba0G 259 8.76e+01 1pd21 199 8.89e+01 1pd21 1lmzA 187 8.91e+01 a.96.1.4 74037