# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vk1A 242 5.11e-03 d.268.1.2 108634 1xb4A 202 4.81e-01 1yzsA 121 6.72e-01 1xw3A 110 7.29e-01 2etvA 346 2.03e+00 1p3dA 475 2.36e+00 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1cxqA 162 2.41e+00 1cxqA c.55.3.2 33621 1t5oA 351 2.70e+00 c.124.1.5 106459 1exqA 154 2.99e+00 1b9dA c.55.3.2 33646 1qh5A 260 3.10e+00 1qh5A d.157.1.2 42057 1i0dA 332 3.26e+00 1pscA c.1.9.3 61487 2bneA 241 4.17e+00 1ve1A 304 4.20e+00 1fxoA 293 4.37e+00 1g0rA c.68.1.6 34524 1bf6A 291 4.80e+00 1pscA c.1.9.3 29065 1o7jA 327 5.22e+00 c.88.1.1 81140 1m65A 245 5.83e+00 c.6.3.1 84847 2dg5A 366 6.87e+00 2b34A 199 7.96e+00 1us0A 316 8.13e+00 c.1.7.1 99850 1m1nA 491 8.52e+00 c.92.2.3 78417 1w98B 283 9.07e+00 1h5rA 293 9.26e+00 c.68.1.6 65623 2bbhA 269 9.59e+00 1zz1A 369 9.78e+00 1oz2A 331 1.08e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1yrcA 414 1.11e+01 1id1A 153 1.20e+01 1id1A c.2.1.9 62286 1r1hA 696 1.20e+01 d.92.1.4 104756 1zd3A 555 1.26e+01 2cohA 202 1.29e+01 2oatA 439 1.36e+01 2dkb c.67.1.4 34452 1ef8A 261 1.39e+01 1ef8A c.14.1.3 30921 1qo2A 241 1.39e+01 1qo2A c.1.2.1 28533 1p42A 270 1.43e+01 d.14.1.7,d.14.1.7 87754,87755 1lvwA 295 1.45e+01 c.68.1.6 84723 1jbwA 428 1.54e+01 c.59.1.2,c.72.2.2 62860,62861 1gqvA 135 1.58e+01 d.5.1.1 70376 1q7fA 286 1.59e+01 b.68.9.1 96036 1pvvA 315 1.69e+01 c.78.1.1,c.78.1.1 95190,95191 2bivA 243 1.71e+01 1pylA 97 1.74e+01 d.1.1.2 104391 1j4aA 333 1.78e+01 c.2.1.4,c.23.12.1 71502,71503 1y81A 138 1.79e+01 1vphA 149 1.83e+01 1uwzA 136 1.83e+01 c.97.1.1 108081 1jztA 246 1.85e+01 c.104.1.1 63319 2fhpA 187 1.87e+01 1h5uA 842 1.91e+01 1a8i c.87.1.4 60655 1o1yA 239 1.93e+01 c.23.16.1 86554 1ooeA 236 1.97e+01 c.2.1.2 87196 1z90A 469 1.98e+01 1qy5A 269 1.99e+01 d.122.1.1 96573 1a0cA 438 2.15e+01 1a0cA c.1.15.3 29529 1ajsA 412 2.15e+01 1ajsA c.67.1.1 34276 1zs9A 261 2.28e+01 1z5yE 149 2.31e+01 1s1pA 331 2.39e+01 c.1.7.1 98350 1orvA 728 2.42e+01 b.70.3.1,c.69.1.24 87354,87355 2ew8A 249 2.42e+01 1mw9X 592 2.52e+01 e.10.1.1 91480 1a6m 151 2.54e+01 1a6m a.1.1.2 15018 1odoA 408 2.55e+01 a.104.1.1 92783 2cvxA 888 2.57e+01 1e6iA 121 2.60e+01 1b91A a.29.2.1 16969 1mlwA 301 2.67e+01 d.178.1.1 79289 2c27A 315 2.67e+01 1ne7A 289 2.68e+01 c.124.1.1 91833 1xvxA 312 2.76e+01 2fj6A 82 2.83e+01 1i60A 278 2.84e+01 c.1.15.4 71118 1ug7A 128 2.84e+01 a.24.24.1 107824 1im5A 180 2.85e+01 c.33.1.3 66211 1zvpA 133 2.85e+01 1o98A 511 2.89e+01 c.105.1.1,c.76.1.3 86684,86685 2c7pA 327 2.99e+01 1vhwA 253 2.99e+01 c.56.2.1 100706 2d5cA 263 3.01e+01 1v7zA 260 3.08e+01 c.125.1.1 100488 2c4jA 218 3.09e+01 8rucI 123 3.13e+01 1rboC d.73.1.1 39629 1cydA 244 3.15e+01 1cydA c.2.1.2 29825 1w85A 368 3.18e+01 1dd9A 338 3.21e+01 1dd9A e.13.1.1 43254 1uz5A 402 3.21e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 2a1fA 247 3.24e+01 1eemA 241 3.28e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1o58A 303 3.32e+01 c.79.1.1 92491 1mfgA 95 3.48e+01 b.36.1.1 79043 2a8yA 270 3.51e+01 1xdwA 331 3.54e+01 1twdA 256 3.55e+01 c.1.30.1 107397 1frb 315 3.59e+01 1frb c.1.7.1 28665 1eceA 358 3.62e+01 1eceA c.1.8.3 28813 1kwgA 645 3.63e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1o69A 394 3.64e+01 c.67.1.4 92560 1bea 127 3.64e+01 1bea a.52.1.2 17826 1vhnA 318 3.64e+01 c.1.4.1 100693 1nnhA 294 3.77e+01 d.104.1.1 92005 2an9A 207 3.78e+01 2gp4A 628 3.78e+01 2fnjC 96 3.80e+01 1vmaA 306 3.82e+01 a.24.13.1,c.37.1.10 108887,108888 1k6iA 352 3.83e+01 c.2.1.2 68223 1y0nA 78 3.84e+01 1jpzA 473 3.85e+01 a.104.1.1 67069 1ylkA 172 3.86e+01 1jdpA 441 3.90e+01 c.93.1.1 62906 1pujA 282 3.92e+01 c.37.1.8 88294 1ltzA 297 3.95e+01 d.178.1.1 74254 1j96A 323 4.03e+01 c.1.7.1 71616 1mgrA 99 4.08e+01 d.1.1.2 79106 1guzA 310 4.22e+01 c.2.1.5,d.162.1.1 65586,65587 1efpB 252 4.32e+01 1efvB c.26.2.3 31636 2c1iA 431 4.41e+01 1c7sA 858 4.41e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1ukcA 522 4.42e+01 c.69.1.17 107911 1jfxA 217 4.42e+01 c.1.8.8 62943 1yewC 289 4.43e+01 1zelA 298 4.44e+01 1b4pA 217 4.44e+01 a.45.1.1,c.47.1.5 83158,83159 1zrn 232 4.53e+01 1qq5A c.108.1.1 43323 1anf 370 4.54e+01 4mbp c.94.1.1 35776 2fnaA 357 4.63e+01 3gcb 470 4.65e+01 3gcb d.3.1.1 37032 1r6uA 437 4.71e+01 c.26.1.1 97163 1xuuA 349 4.72e+01 1zp4A 304 4.77e+01 1wn5A 130 4.80e+01 2c78A 405 4.84e+01 2fdbM 164 4.85e+01 1e8gA 560 4.93e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 2d2eA 250 4.93e+01 1vl7A 157 4.94e+01 b.45.1.1 108732 1gmuA 143 5.02e+01 b.107.1.1,d.58.38.1 65335,65336 1k6dA 220 5.03e+01 c.124.1.2 72082 1o2dA 371 5.03e+01 e.22.1.2 86591 1tc1A 220 5.05e+01 1tc1A c.61.1.1 34083 1ttzA 87 5.10e+01 c.47.1.1 107309 1xgkA 352 5.11e+01 1gjnA 153 5.32e+01 a.1.1.2 70191 2a65A 519 5.36e+01 1ybdA 239 5.36e+01 2frfA 153 5.41e+01 2g0uA 92 5.47e+01 1yc5A 246 5.49e+01 1h6fA 193 5.52e+01 b.2.5.4 70901 1m6sA 347 5.57e+01 c.67.1.1 78701 1j55A 95 5.62e+01 a.39.1.2 77078 1i0lA 221 5.71e+01 c.61.1.1 71096 1jz8A 1023 5.72e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1m32A 366 5.75e+01 c.67.1.3 78508 1ml4A 308 5.75e+01 c.78.1.1,c.78.1.1 79255,79256 1xx6A 191 5.75e+01 1q5dA 419 5.82e+01 a.104.1.1 95891 1uqvA 85 5.87e+01 a.60.1.2 99798 1ebfA 358 5.92e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1y0mA 61 5.93e+01 2aa1B 146 6.03e+01 1gs5A 258 6.19e+01 c.73.1.2 70395 1lngA 87 6.26e+01 d.201.1.1 74045 1m4vA 204 6.27e+01 b.40.2.2,d.15.6.1 74459,74460 1lniA 96 6.27e+01 d.1.1.2 74046 1m70A 190 6.27e+01 a.3.1.4,a.3.1.4 91200,91201 1wzlA 585 6.28e+01 2dfkA 402 6.32e+01 1vflA 356 6.33e+01 1ji1A 637 6.34e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1yb3A 175 6.34e+01 1jsf 130 6.39e+01 3lzt d.2.1.2 36410 1wkaA 147 6.39e+01 2g76A 335 6.45e+01 1g5cA 170 6.56e+01 1g5cA c.53.2.1 60264 1h1yA 228 6.57e+01 c.1.2.2 76506 1nu0A 138 6.66e+01 c.55.3.8 92165 1b93A 152 6.72e+01 1b93A c.24.1.2 31507 2b8tA 223 6.75e+01 1itxA 419 6.77e+01 c.1.8.5,d.26.3.1 71425,71426 1dp4A 435 6.92e+01 1dp4A c.93.1.1 35710 2b49A 287 6.93e+01 1fnnA 389 6.94e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1wkyA 464 6.97e+01 1s2wA 295 7.00e+01 c.1.12.7 98407 1nnsA 326 7.01e+01 c.88.1.1 85910 2fl4A 149 7.02e+01 2rslA 140 7.05e+01 2rslA c.53.1.1 33345 1e7wA 291 7.10e+01 c.2.1.2 59373 3kvt 115 7.11e+01 1t1dA d.42.1.2 38642 1ta3B 303 7.16e+01 c.1.8.3 106732 2fbwA 621 7.17e+01 2a1iA 146 7.18e+01 1lm8C 96 7.22e+01 d.42.1.1 74034 1z5zA 271 7.28e+01 1wvfA 520 7.32e+01 1o1zA 234 7.36e+01 c.1.18.3 86555 1zmdA 474 7.51e+01 1wd5A 208 7.52e+01 1aua 296 7.56e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1qf9A 194 7.58e+01 1zin c.37.1.1 31848 1k8qA 377 7.61e+01 c.69.1.6 72177 1lla 628 7.64e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1wtaA 275 7.68e+01 2ctoA 93 7.71e+01 1vi2A 300 7.81e+01 c.2.1.7,c.58.1.5 100726,100727 1oc2A 348 7.83e+01 c.2.1.2 92765 1wtjA 343 7.84e+01 1juvA 193 7.89e+01 c.71.1.1 90912 1lmzA 187 7.99e+01 a.96.1.4 74037 2aaxA 275 8.05e+01 1pv5A 264 8.11e+01 d.251.1.1 95150 1b0nA 111 8.14e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1dcs 311 8.15e+01 1dcs b.82.2.1 28124 1v9nA 360 8.15e+01 1din 236 8.17e+01 1din c.69.1.9 34682 2gh1A 301 8.17e+01 1bw0A 416 8.18e+01 1bw0A c.67.1.1 34385 1mqoA 227 8.22e+01 d.157.1.1 103846 1wzaA 488 8.24e+01 1dbwA 126 8.24e+01 1dbwA c.23.1.1 31095 1wlmA 151 8.24e+01 1l6xA 207 8.24e+01 b.1.1.2,b.1.1.2 73642,73643 1s9uA 207 8.26e+01 a.184.1.1 105390 1vk6A 269 8.28e+01 d.113.1.4,d.113.1.4 100851,100852 1zybA 232 8.38e+01 1ow4A 129 8.39e+01 a.39.2.1 93628 1npiA 61 8.46e+01 g.3.7.1 80685 1jf3A 147 8.56e+01 a.1.1.2 71642 1dxeA 256 8.60e+01 1dxeA c.1.12.5 29310 1atzA 189 8.73e+01 1atzA c.62.1.1 34132