# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vk1A 242 6.43e-03 d.268.1.2 108634 1xb4A 202 3.38e-01 1yy7A 213 7.96e-01 1zs9A 261 9.11e-01 1r1hA 696 9.98e-01 d.92.1.4 104756 1u46A 291 2.03e+00 d.144.1.7 107656 1o6dA 163 2.76e+00 c.116.1.3 92567 1ne7A 289 2.80e+00 c.124.1.1 91833 1iwmA 186 3.39e+00 b.125.1.2 83758 1q7fA 286 3.80e+00 b.68.9.1 96036 1rwiA 270 4.38e+00 b.68.9.1 97987 1t6t1 118 4.77e+00 1k87A 669 5.66e+00 a.176.1.1,c.1.23.2 77286,77287 1s2oA 244 6.79e+00 1z5zA 271 7.06e+00 1zq6A 359 7.70e+00 1i60A 278 8.43e+00 c.1.15.4 71118 1yzxA 226 8.83e+00 1yh1A 359 1.01e+01 1b4pA 217 1.03e+01 a.45.1.1,c.47.1.5 83158,83159 1wzzA 334 1.06e+01 1bx1A 314 1.06e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 2bneA 241 1.17e+01 1fnd 314 1.21e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1pswA 348 1.24e+01 c.87.1.7 88287 1w98B 283 1.27e+01 1z6bA 154 1.29e+01 2g3bA 208 1.30e+01 2fl7A 232 1.31e+01 1yal 218 1.43e+01 1cs8A d.3.1.1 37025 1dyoA 160 1.43e+01 1dyoA b.18.1.7 23771 2d2eA 250 1.53e+01 1xhnA 184 1.55e+01 1gs5A 258 1.62e+01 c.73.1.2 70395 1xvxA 312 1.63e+01 1nnhA 294 1.68e+01 d.104.1.1 92005 6ldh 330 1.73e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 1ignA 246 1.91e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 2fa8A 105 2.02e+01 1ngr 85 2.05e+01 1ngr a.77.1.2 18422 1agi 125 2.31e+01 7rsa d.5.1.1 37303 1ckeA 227 2.36e+01 1ckeA c.37.1.1 31846 1gqvA 135 2.48e+01 d.5.1.1 70376 1yviA 149 2.50e+01 1jsf 130 2.59e+01 3lzt d.2.1.2 36410 1dl5A 317 2.63e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1lmzA 187 2.66e+01 a.96.1.4 74037 1y88A 199 2.69e+01 1ex2A 189 2.79e+01 1ex2A c.51.4.2 33225 2fmlA 273 2.81e+01 2carA 196 2.81e+01 1vl7A 157 2.82e+01 b.45.1.1 108732 1i1nA 226 2.87e+01 c.66.1.7 71102 1xyiA 66 2.97e+01 1n3yA 198 2.98e+01 c.62.1.1 79976 2a1fA 247 3.06e+01 2gfnA 209 3.14e+01 2genA 197 3.18e+01 2fdsA 352 3.25e+01 1kjvB 100 3.29e+01 b.1.1.2 77423 1vecA 206 3.31e+01 c.37.1.19 100575 1cruA 454 3.34e+01 1c9uA b.68.2.1 27617 2cohA 202 3.46e+01 1vi2A 300 3.52e+01 c.2.1.7,c.58.1.5 100726,100727 2bf6A 449 3.59e+01 1lo7A 141 3.61e+01 d.38.1.1 74144 1p4oA 322 3.62e+01 d.144.1.7 87775 1cfzA 162 3.68e+01 1cfzA c.56.1.1 33754 1q2zA 120 3.70e+01 a.118.19.1 95656 1xnfA 275 3.71e+01 2gp5A 349 3.73e+01 1v58A 241 3.74e+01 c.47.1.9,d.17.3.1 108371,108372 1f02T 66 3.79e+01 1f02T j.67.1.1 46360 2g0cA 76 3.83e+01 2byoA 207 3.83e+01 2bv2A 83 3.99e+01 1eaxA 241 4.02e+01 b.47.1.2 64889 1cy5A 97 4.02e+01 1cy5A a.77.1.3 18430 1p9kA 79 4.03e+01 d.66.1.6 94392 2bivA 243 4.16e+01 1ihgA 370 4.32e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1pjr 724 4.41e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1ug7A 128 4.65e+01 a.24.24.1 107824 1kjnA 157 4.66e+01 c.115.1.1 72614 1tueA 212 4.69e+01 c.37.1.20 107323 1wxcA 281 4.70e+01 1nw1A 429 4.72e+01 d.144.1.8 86286 2ah5A 210 4.76e+01 1io7A 368 4.83e+01 1f4tA a.104.1.1 18971 1nz6A 101 4.83e+01 a.2.3.1 86441 1vmaA 306 4.84e+01 a.24.13.1,c.37.1.10 108887,108888 1dk8A 147 4.86e+01 1agrE a.91.1.1 18548 1dp4A 435 4.87e+01 1dp4A c.93.1.1 35710 2abqA 306 4.87e+01 1mvcA 240 4.88e+01 a.123.1.1 79499 1lm8V 160 4.94e+01 b.3.3.1 74035 1hc7A 477 4.98e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1g8kA 825 5.03e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1gjnA 153 5.05e+01 a.1.1.2 70191 1o5zA 442 5.06e+01 c.59.1.2,c.72.2.2 92530,92531 1cby 259 5.16e+01 1cby d.103.1.1 40705 1kdoA 227 5.26e+01 c.37.1.1 68478 1khyA 148 5.40e+01 a.174.1.1 77410 4uagA 437 5.40e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1exrA 148 5.47e+01 1cll a.39.1.5 17299 2g40A 224 5.50e+01 1tig 94 5.57e+01 1tig d.68.1.1 39566 2gaeA 346 5.61e+01 2ghsA 326 5.62e+01 1ymqA 261 5.63e+01 1eceA 358 5.70e+01 1eceA c.1.8.3 28813 2frfA 153 5.72e+01 2erfA 209 5.75e+01 1vfgA 390 5.75e+01 a.173.1.1,d.218.1.4 108570,108571 2c4jA 218 5.91e+01 1inlA 296 5.92e+01 c.66.1.17 66220 1evlA 401 6.00e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1np7A 489 6.25e+01 a.99.1.1,c.28.1.1 80677,80678 1i1qB 192 6.26e+01 1qdlB c.23.16.1 61544 1hr6A 475 6.26e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 2pgd 482 6.31e+01 2pgd a.100.1.1,c.2.1.6 18778,30190 1s1pA 331 6.36e+01 c.1.7.1 98350 1w36B 1180 6.39e+01 1i19A 561 6.43e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1fxlA 167 6.53e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 2g0wA 296 6.55e+01 1u5tA 233 6.57e+01 a.4.5.54,a.4.5.54 107684,107685 1xxlA 239 6.58e+01 1wtaA 275 6.61e+01 1ii7A 333 6.65e+01 1ii7A d.159.1.4 62415 1qysA 106 6.66e+01 k.41.1.1 96603 1dugA 234 6.70e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1xkpB 124 6.70e+01 1l5wA 796 6.74e+01 c.87.1.4 73605 1oz2A 331 6.76e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1wpbA 172 6.91e+01 1pv5A 264 6.91e+01 d.251.1.1 95150 1rypL 212 6.94e+01 d.153.1.4 41880 2fxaA 207 6.99e+01 1vqoI 162 7.06e+01 1rkuA 206 7.14e+01 c.108.1.11 97627 1z0kB 69 7.21e+01 1lmq 129 7.21e+01 3lzt d.2.1.2 36588 1y0nA 78 7.23e+01 1psrA 100 7.25e+01 1psrA a.39.1.2 17180 1gkmA 509 7.32e+01 a.127.1.2 70228 1fiqC 763 7.32e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1jboB 172 7.39e+01 a.1.1.3 84151 1rd5A 262 7.39e+01 1v7zA 260 7.42e+01 c.125.1.1 100488 1wj5A 120 7.43e+01 1pb6A 212 7.58e+01 a.4.1.9,a.121.1.1 88017,88018 2ae0X 345 7.58e+01 1vplA 256 7.65e+01 1m0wA 491 7.66e+01 c.30.1.4,d.142.1.6 78363,78364 1l0wA 580 7.67e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 2fq4A 192 7.75e+01 1xe0A 114 7.77e+01 1orrA 347 7.78e+01 c.2.1.2 93460 1nofA 383 7.79e+01 b.71.1.2,c.1.8.3 92020,92021 1bm9A 122 7.89e+01 1bm9A a.4.5.7 16116 1z8uA 102 7.91e+01 3ygsP 97 8.00e+01 3ygsP a.77.1.3 18435 1tbxA 99 8.03e+01 a.4.5.48 106748 1mbmA 198 8.06e+01 b.47.1.3 78916 1o98A 511 8.21e+01 c.105.1.1,c.76.1.3 86684,86685 1k6kA 143 8.31e+01 a.174.1.1 77274 2napA 723 8.38e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1wh0A 134 8.39e+01 2fnaA 357 8.43e+01 1t4wA 196 8.63e+01 b.2.5.2 106427 2faoA 309 8.72e+01 1vr4A 103 8.75e+01 1rkd 309 8.76e+01 1rkd c.72.1.1 34928 1fuiA 591 8.77e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 4tmkA 213 8.77e+01 5tmpA c.37.1.1 31930 2g8yA 385 8.79e+01 2fkcA 247 8.86e+01 1gky 187 8.92e+01 1gky c.37.1.1 31839 1vk8A 106 8.96e+01 d.58.48.1 108636 1e8gA 560 8.99e+01 1qltA d.58.32.1,d.145.1.1 39455,41718