# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vk1A 242 1.98e-02 d.268.1.2 108634 1z5zA 271 2.88e-01 1xb4A 202 8.59e-01 1o6dA 163 1.91e+00 c.116.1.3 92567 1zs9A 261 2.80e+00 2fa8A 105 4.05e+00 2b5lC 222 4.28e+00 1xhnA 184 4.97e+00 1u46A 291 5.34e+00 d.144.1.7 107656 1b4pA 217 6.14e+00 a.45.1.1,c.47.1.5 83158,83159 1pswA 348 6.25e+00 c.87.1.7 88287 1ex2A 189 7.23e+00 1ex2A c.51.4.2 33225 1dyoA 160 8.05e+00 1dyoA b.18.1.7 23771 1lmzA 187 8.61e+00 a.96.1.4 74037 1iwmA 186 8.76e+00 b.125.1.2 83758 1k87A 669 9.05e+00 a.176.1.1,c.1.23.2 77286,77287 1r1hA 696 9.52e+00 d.92.1.4 104756 2bs3C 256 9.72e+00 1yy7A 213 1.03e+01 1q7fA 286 1.07e+01 b.68.9.1 96036 3ygsP 97 1.07e+01 3ygsP a.77.1.3 18435 1z6bA 154 1.08e+01 1sx5A 244 1.16e+01 c.52.1.2 99023 2byoA 207 1.17e+01 1cruA 454 1.20e+01 1c9uA b.68.2.1 27617 1ox0A 430 1.22e+01 c.95.1.1,c.95.1.1 87495,87496 1ne7A 289 1.23e+01 c.124.1.1 91833 1wh0A 134 1.27e+01 2bf6A 449 1.28e+01 1w98B 283 1.30e+01 1ngr 85 1.41e+01 1ngr a.77.1.2 18422 1rsgA 516 1.41e+01 2g0wA 296 1.45e+01 1ignA 246 1.58e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 1rwiA 270 1.61e+01 b.68.9.1 97987 1kjvB 100 1.64e+01 b.1.1.2 77423 1h1nA 305 1.67e+01 c.1.8.3 70855 1t6t1 118 2.00e+01 1vi2A 300 2.01e+01 c.2.1.7,c.58.1.5 100726,100727 2carA 196 2.09e+01 1fiqC 763 2.11e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1bg4 302 2.12e+01 1taxA c.1.8.3 28806 2fmlA 273 2.27e+01 2fp8A 322 2.43e+01 1xnfA 275 2.45e+01 2g0cA 76 2.59e+01 2g3bA 208 2.60e+01 1exqA 154 2.61e+01 1b9dA c.55.3.2 33646 1o5hA 214 2.65e+01 a.191.1.1 92497 1b6a 478 2.75e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1wsrA 375 2.83e+01 2g09A 297 2.88e+01 1iyhA 198 2.90e+01 a.45.1.1,c.47.1.5 83790,83791 1uehA 253 3.27e+01 c.101.1.1 99259 1qqfA 277 3.37e+01 1c3d a.102.4.4 18875 2c4jA 218 3.46e+01 1x82A 190 3.52e+01 1zrn 232 3.60e+01 1qq5A c.108.1.1 43323 1n12A 138 3.61e+01 b.2.3.2 79779 1v58A 241 3.77e+01 c.47.1.9,d.17.3.1 108371,108372 1gjnA 153 3.83e+01 a.1.1.2 70191 1xtmA 175 3.85e+01 1t2bA 397 4.23e+01 1jsdA 319 4.24e+01 b.19.1.2 63258 1xyiA 66 4.29e+01 1o2dA 371 4.30e+01 e.22.1.2 86591 1t95A 240 4.31e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 6ldh 330 4.41e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 1m0wA 491 4.43e+01 c.30.1.4,d.142.1.6 78363,78364 1rm8A 169 4.43e+01 d.92.1.11 97660 1aisA 182 4.47e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1wzdA 215 4.49e+01 1cby 259 4.55e+01 1cby d.103.1.1 40705 1ixmA 192 4.56e+01 1ixmA d.123.1.1 41114 1wpbA 172 4.80e+01 1id1A 153 4.81e+01 1id1A c.2.1.9 62286 1wzzA 334 4.82e+01 1wtaA 275 4.82e+01 1bm9A 122 4.83e+01 1bm9A a.4.5.7 16116 1lw1A 177 4.86e+01 a.152.1.1 74290 1fk5A 93 4.89e+01 1rzl a.52.1.1 59866 1gwiA 411 4.90e+01 a.104.1.1 76364 1s4iA 175 4.92e+01 2fkcA 247 4.96e+01 2f3yA 148 5.14e+01 1ckeA 227 5.20e+01 1ckeA c.37.1.1 31846 1mveA 243 5.20e+01 b.29.1.2 85140 1i60A 278 5.20e+01 c.1.15.4 71118 1yh1A 359 5.37e+01 1ka1A 357 5.59e+01 e.7.1.1 68369 1yzxA 226 5.63e+01 2cwpA 112 5.77e+01 1kt6A 183 5.87e+01 b.60.1.1 84466 1gu9A 177 5.90e+01 a.152.1.1 65540 1f74A 293 5.90e+01 1nal3 c.1.10.1 29079 1l0wA 580 5.91e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1sx7A 164 5.93e+01 1w36B 1180 5.96e+01 1ypvA 313 6.02e+01 1zq6A 359 6.02e+01 1oq9A 363 6.04e+01 a.25.1.2 87257 1uf2A 1019 6.19e+01 e.28.1.2 99289 1jlvA 209 6.22e+01 a.45.1.1,c.47.1.5 71729,71730 2fdbM 164 6.24e+01 1jhsA 188 6.30e+01 d.107.1.1 84172 2bg9A 370 6.31e+01 1wpoA 256 6.32e+01 1lay b.57.1.1 27012 1rwhA 757 6.33e+01 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1o1zA 234 6.36e+01 c.1.18.3 86555 1hh1A 143 6.37e+01 1gefA c.52.1.18 61036 1n82A 331 6.48e+01 c.1.8.3 91703 1jwiB 125 6.54e+01 d.169.1.1 67384 1dp4A 435 6.59e+01 1dp4A c.93.1.1 35710 2b67A 204 6.66e+01 2frfA 153 6.66e+01 1xdwA 331 6.67e+01 2fhxA 246 6.69e+01 1dbxA 158 6.79e+01 1dbuA d.116.1.1 40928 1ejfA 125 6.97e+01 1ejfA b.15.1.2 23683 1u5tA 233 7.00e+01 a.4.5.54,a.4.5.54 107684,107685 1e5mA 416 7.01e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1tn6A 382 7.02e+01 1qvzA 237 7.08e+01 c.23.16.2 96453 1pn0A 665 7.21e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1bx1A 314 7.22e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 2napA 723 7.25e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1e58A 249 7.31e+01 1qhfA c.60.1.1 59262 1orrA 347 7.31e+01 c.2.1.2 93460 1jdpA 441 7.39e+01 c.93.1.1 62906 1v7pB 128 7.46e+01 d.169.1.1 108407 1uc7A 125 7.52e+01 c.47.1.1 99163 1tueA 212 7.57e+01 c.37.1.20 107323 1mbmA 198 7.59e+01 b.47.1.3 78916 1rw7A 243 7.68e+01 c.23.16.2 97963 1w2yA 229 7.71e+01 a.204.1.1 109140 1k0mA 241 7.76e+01 a.45.1.1,c.47.1.5 67949,67950 1elvA 333 7.86e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1z91A 147 7.92e+01 1va0A 239 8.02e+01 2fxaA 207 8.04e+01 1hr6A 475 8.06e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1cy5A 97 8.06e+01 1cy5A a.77.1.3 18430 1e6bA 221 8.09e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1iw0A 215 8.21e+01 a.132.1.1 83720 1guzA 310 8.24e+01 c.2.1.5,d.162.1.1 65586,65587 1jztA 246 8.25e+01 c.104.1.1 63319 1n1jB 97 8.29e+01 a.22.1.3 79814 1q2zA 120 8.44e+01 a.118.19.1 95656 1g3qA 237 8.45e+01 1hyqA c.37.1.10 60237 1lo7A 141 8.53e+01 d.38.1.1 74144 1fnd 314 8.53e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1j4aA 333 8.69e+01 c.2.1.4,c.23.12.1 71502,71503 1yal 218 8.82e+01 1cs8A d.3.1.1 37025