Best Alignments for T0347

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1vk1A/T0347-1vk1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vk1A/T0347-1vk1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9024e-033.52e-26 d.268.1.2
1xw3A/T0347-1xw3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xw3A/T0347-1xw3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6888e+003.85e-15
1xb4A/T0347-1xb4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xb4A/T0347-1xb4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8896e+006.75e-07
1u5tC/T0347-1u5tC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u5tC/T0347-1u5tC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4168e+004.15e-05 a.4.5.54
a.4.5.54
1yzsA/T0347-1yzsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yzsA/T0347-1yzsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0003e+001.80e-13
1xw4X/T0347-1xw4X-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xw4X/T0347-1xw4X-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4319e+007.61e-10
1gs5A/T0347-1gs5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gs5A/T0347-1gs5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8161e+001.50e-10 c.73.1.2
1p3dA/T0347-1p3dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1p3dA/T0347-1p3dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0237e+008.06e-09 c.5.1.1
c.59.1.1
c.72.2.1
1z5zA/T0347-1z5zA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z5zA/T0347-1z5zA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.5588e+008.14e-01
1qycA/T0347-1qycA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qycA/T0347-1qycA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.8875e+005.96e-07 c.2.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001