# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vk1A 242 1.17e-02 d.268.1.2 108634 1z5zA 271 1.37e-01 1u5tC 202 5.65e-01 a.4.5.54,a.4.5.54 107688,107689 1xb4A 202 7.02e-01 1z6aA 500 7.45e-01 2fa8A 105 7.66e-01 1pd21 199 9.32e-01 1pd21 1z63A 500 9.36e-01 1o6dA 163 1.04e+00 c.116.1.3 92567 1b4pA 217 2.76e+00 a.45.1.1,c.47.1.5 83158,83159 1pswA 348 3.22e+00 c.87.1.7 88287 1yy7A 213 4.05e+00 1z6bA 154 4.72e+00 1xw5A 217 5.29e+00 1nw1A 429 5.59e+00 d.144.1.8 86286 1u46A 291 7.29e+00 d.144.1.7 107656 2c4jA 218 7.45e+00 2byoA 207 1.07e+01 1cruA 454 1.08e+01 1c9uA b.68.2.1 27617 1q7fA 286 1.23e+01 b.68.9.1 96036 1ox0A 430 1.26e+01 c.95.1.1,c.95.1.1 87495,87496 1rj9A 304 1.42e+01 a.24.13.1,c.37.1.10 97553,97554 1sx5A 244 1.45e+01 c.52.1.2 99023 6gsvA 217 1.51e+01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1dmtA 696 1.58e+01 1dmtA d.92.1.4 40296 1xfdA 723 1.58e+01 1t6t1 118 1.60e+01 1aqb 183 1.70e+01 1aqb b.60.1.1 27084 1rwiA 270 1.75e+01 b.68.9.1 97987 1xhnA 184 1.81e+01 1kjvB 100 1.85e+01 b.1.1.2 77423 1iuhA 198 1.87e+01 d.61.1.2 83711 2g3bA 208 1.89e+01 1fiqC 763 1.93e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1vi2A 300 1.99e+01 c.2.1.7,c.58.1.5 100726,100727 1ngr 85 2.03e+01 1ngr a.77.1.2 18422 1dyoA 160 2.04e+01 1dyoA b.18.1.7 23771 1h1nA 305 2.12e+01 c.1.8.3 70855 1w98B 283 2.16e+01 2b5lC 222 2.18e+01 1yh1A 359 2.25e+01 1wsrA 375 2.26e+01 1rw2A 152 2.27e+01 a.118.19.1 97961 1zs9A 261 2.28e+01 1iyhA 198 2.29e+01 a.45.1.1,c.47.1.5 83790,83791 1kt6A 183 2.39e+01 b.60.1.1 84466 1ex2A 189 2.39e+01 1ex2A c.51.4.2 33225 1rvaA 244 2.39e+01 1rvaA c.52.1.2 33240 1hbq 183 2.48e+01 1aqb b.60.1.1 27078 1zq6A 359 2.51e+01 2bf6A 449 2.52e+01 1m0wA 491 2.55e+01 c.30.1.4,d.142.1.6 78363,78364 2fmlA 273 2.64e+01 1k4tA 592 2.69e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 1fw1A 216 2.73e+01 a.45.1.1,c.47.1.5 60051,60052 2bs3C 256 2.86e+01 1r1hA 696 2.90e+01 d.92.1.4 104756 1wucA 250 2.92e+01 1iw7C 1119 2.94e+01 e.29.1.1 71474 1bm9A 122 3.02e+01 1bm9A a.4.5.7 16116 1w36B 1180 3.09e+01 1iwmA 186 3.30e+01 b.125.1.2 83758 1n2aA 201 3.44e+01 a.45.1.1,c.47.1.5 91553,91554 1dp4A 435 3.46e+01 1dp4A c.93.1.1 35710 1qlaC 256 3.73e+01 1qlaC f.21.2.1 43722 1v58A 241 3.87e+01 c.47.1.9,d.17.3.1 108371,108372 1wpbA 172 3.92e+01 1uehA 253 3.99e+01 c.101.1.1 99259 1xriA 151 4.09e+01 2a0fA 310 4.12e+01 1ignA 246 4.22e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 1b6a 478 4.53e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 3ygsP 97 4.62e+01 3ygsP a.77.1.3 18435 1jlwA 219 4.66e+01 a.45.1.1,c.47.1.5 71741,71742 1n82A 331 4.71e+01 c.1.8.3 91703 1lbkA 208 4.74e+01 a.45.1.1,c.47.1.5 73809,73810 1b7gO 340 4.75e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 2g0wA 296 4.79e+01 2fp8A 322 4.80e+01 1vr0A 247 4.84e+01 2a6hC 1119 4.85e+01 1eonA 245 4.92e+01 1rvaA c.52.1.2 33238 1rzrA 332 4.92e+01 1wzdA 215 4.96e+01 1cby 259 5.10e+01 1cby d.103.1.1 40705 1qycA 308 5.10e+01 c.2.1.2 96581 2fkcA 247 5.16e+01 1o5hA 214 5.36e+01 a.191.1.1 92497 1rm8A 169 5.37e+01 d.92.1.11 97660 1elvA 333 5.40e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1bx1A 314 5.45e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1hh2P 344 5.49e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1o97C 264 5.53e+01 c.26.2.3 81232 1p5zB 263 5.71e+01 c.37.1.1 87815 2cwpA 112 5.87e+01 1qqfA 277 5.88e+01 1c3d a.102.4.4 18875 1jwiB 125 5.88e+01 d.169.1.1 67384 1xyiA 66 5.91e+01 2b67A 204 5.96e+01 1a0fA 201 5.99e+01 1a0fA a.45.1.1,c.47.1.5 17737,33031 1xtlA 175 6.12e+01 2ctdA 96 6.18e+01 1bo1A 416 6.26e+01 1bo1A d.143.1.2 41591 1l0wA 580 6.36e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1va0A 239 6.37e+01 1xtmA 175 6.37e+01 1ynmA 247 6.37e+01 1lenB 52 6.59e+01 2ltnB 1pgtA 210 6.59e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1qg3A 195 6.64e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 1eq6A 189 6.86e+01 1eq6A d.107.1.1 40796 1ukmB 128 6.91e+01 d.169.1.1 99500 1e6bA 221 6.92e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1q1hA 110 6.97e+01 a.4.5.41 95580 1jsdA 319 7.00e+01 b.19.1.2 63258 1azpA 66 7.14e+01 1azpA b.34.13.1 37467 2gk4A 232 7.34e+01 2g0cA 76 7.44e+01 1jhsA 188 7.52e+01 d.107.1.1 84172 2bduA 297 7.56e+01 1yy5B 513 7.72e+01 1rovA 857 7.73e+01 a.119.1.1,b.12.1.1 97674,97675 1bg4 302 7.78e+01 1taxA c.1.8.3 28806 2ab5A 269 7.88e+01 2ctc 307 7.95e+01 1aye c.56.5.1 33802 2bxkA 585 7.96e+01 1zmdA 474 7.98e+01 1wzzA 334 8.01e+01 1th0A 226 8.02e+01 d.3.1.7 106903 1k87A 669 8.03e+01 a.176.1.1,c.1.23.2 77286,77287 1fnd 314 8.18e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1npk 154 8.31e+01 1npk d.58.6.1 39099 2bv2A 83 8.39e+01 1yg9A 330 8.41e+01 1e5xA 486 8.49e+01 c.79.1.1 59283 1fnc 314 8.51e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1n1cA 217 8.59e+01 a.184.1.1 85254 1uc7A 125 8.72e+01 c.47.1.1 99163 2b0tA 738 8.82e+01 1ka1A 357 8.84e+01 e.7.1.1 68369 1wpoA 256 8.94e+01 1lay b.57.1.1 27012 1n5uA 585 8.98e+01 a.126.1.1,a.126.1.1,a.126.1.1 85339,85340,85341