Best Alignments for T0347

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1xb4A/T0347-1xb4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xb4A/T0347-1xb4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5182e+003.68e-05
1u5tC/T0347-1u5tC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u5tC/T0347-1u5tC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6108e+008.00e-04 a.4.5.54
a.4.5.54
1dgsA/T0347-1dgsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dgsA/T0347-1dgsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6972e+004.05e-02 1dgsA a.60.2.2
b.40.4.6
d.142.2.2
1t70A/T0347-1t70A-t2k-local-adpstyle1.a2m 1t70A/T0347-1t70A-t2k-local-adpstyle1.al 8.1135e+004.13e+00
1r1hA/T0347-1r1hA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1r1hA/T0347-1r1hA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3399e+012.17e-03 d.92.1.4
1y9kA/T0347-1y9kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y9kA/T0347-1y9kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4072e+015.02e+01
1zs9A/T0347-1zs9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zs9A/T0347-1zs9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4259e+011.60e+03
1iuhA/T0347-1iuhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1iuhA/T0347-1iuhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4276e+016.10e-02 d.61.1.2
1ne7A/T0347-1ne7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ne7A/T0347-1ne7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6485e+011.35e-02 c.124.1.1
1yo7A/T0347-1yo7A-t2k-global-adpstyle1.a2m 1yo7A/T0347-1yo7A-t2k-global-adpstyle1.al 2.1945e+014.78e-02

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001