# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xb4A 202 9.54e-02 1exqA 154 7.53e-01 1b9dA c.55.3.2 33646 1zz1A 369 2.91e+00 1zs9A 261 4.64e+00 1h5uA 842 4.76e+00 1a8i c.87.1.4 60655 1oz2A 331 4.77e+00 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2bivA 243 5.82e+00 1y81A 138 6.12e+00 1w85A 368 6.49e+00 1gqvA 135 6.50e+00 d.5.1.1 70376 1a6m 151 6.54e+00 1a6m a.1.1.2 15018 1jpzA 473 7.10e+00 a.104.1.1 67069 1oe4A 247 7.57e+00 c.18.1.3 86895 2dg5A 366 8.01e+00 1anf 370 8.16e+00 4mbp c.94.1.1 35776 1e6iA 121 9.19e+00 1b91A a.29.2.1 16969 1xvxA 312 9.57e+00 1px5A 349 9.69e+00 a.160.1.2,d.218.1.6 95277,95278 1ylkA 172 9.77e+00 1e7wA 291 1.01e+01 c.2.1.2 59373 2fhfA 1083 1.05e+01 1ltqA 301 1.15e+01 c.108.1.9,c.37.1.1 78208,78209 1ly1A 181 1.16e+01 c.37.1.1 74334 1cydA 244 1.17e+01 1cydA c.2.1.2 29825 1zrn 232 1.20e+01 1qq5A c.108.1.1 43323 1ne7A 289 1.31e+01 c.124.1.1 91833 1eceA 358 1.31e+01 1eceA c.1.8.3 28813 2cvxA 888 1.33e+01 1mlwA 301 1.41e+01 d.178.1.1 79289 2ew8A 249 1.49e+01 1y0nA 78 1.66e+01 1bea 127 1.70e+01 1bea a.52.1.2 17826 1ef8A 261 1.80e+01 1ef8A c.14.1.3 30921 1vj1A 363 1.99e+01 b.35.1.2,c.2.1.1 100794,100795 2fwhA 134 2.02e+01 1uc7A 125 2.03e+01 c.47.1.1 99163 2dfkA 402 2.04e+01 1i0dA 332 2.04e+01 1pscA c.1.9.3 61487 1jsf 130 2.10e+01 3lzt d.2.1.2 36410 1st9A 143 2.12e+01 c.47.1.10 98987 2f9sA 151 2.20e+01 1nnhA 294 2.24e+01 d.104.1.1 92005 2cmwA 310 2.31e+01 1pylA 97 2.42e+01 d.1.1.2 104391 1ug7A 128 2.43e+01 a.24.24.1 107824 2a65A 519 2.49e+01 1ituA 369 2.49e+01 c.1.9.7 71423 1gjnA 153 2.51e+01 a.1.1.2 70191 1h6fA 193 2.53e+01 b.2.5.4 70901 2frfA 153 2.55e+01 1tzyC 136 2.59e+01 a.22.1.1 107532 1z15A 344 2.60e+01 1zd3A 555 2.76e+01 2fdbM 164 2.84e+01 1m70A 190 2.92e+01 a.3.1.4,a.3.1.4 91200,91201 1b4pA 217 2.99e+01 a.45.1.1,c.47.1.5 83158,83159 1o20A 427 3.22e+01 c.82.1.1 86556 1nw1A 429 3.26e+01 d.144.1.8 86286 1g4wR 383 3.29e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1eokA 290 3.31e+01 1eokA c.1.8.5 28991 1b0nA 111 3.34e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 2g0uA 92 3.39e+01 2bneA 241 3.43e+01 1s9uA 207 3.51e+01 a.184.1.1 105390 2cnqA 306 3.56e+01 1h1yA 228 3.58e+01 c.1.2.2 76506 1spxA 278 3.61e+01 c.2.1.2 98958 1obdA 306 3.71e+01 d.143.1.1 86767 2an3A 289 3.76e+01 1npiA 61 3.78e+01 g.3.7.1 80685 1jf3A 147 3.86e+01 a.1.1.2 71642 1yrcA 414 3.88e+01 2gs5A 198 3.90e+01 1zvtA 256 3.91e+01 1qrvA 73 4.07e+01 1cktA a.21.1.1 16425 1mw9X 592 4.10e+01 e.10.1.1 91480 1wrjA 156 4.10e+01 1lngA 87 4.15e+01 d.201.1.1 74045 1yc5A 246 4.15e+01 1r1hA 696 4.15e+01 d.92.1.4 104756 1v3vA 333 4.22e+01 b.35.1.2,c.2.1.1 108345,108346 1qvzA 237 4.23e+01 c.23.16.2 96453 2d00A 109 4.23e+01 1xw8A 252 4.28e+01 1tfzA 424 4.33e+01 d.32.1.3,d.32.1.3 106886,106887 2a8yA 270 4.33e+01 2czlA 272 4.36e+01 1wtaA 275 4.44e+01 1x0rA 249 4.45e+01 1rypB 250 4.46e+01 1rypB d.153.1.4 41933 2bbrA 195 4.47e+01 1qo2A 241 4.50e+01 1qo2A c.1.2.1 28533 2bn5A 33 4.56e+01 1e8gA 560 4.57e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1vyrA 364 4.62e+01 c.1.4.1 108906 1xuuA 349 4.65e+01 1o1zA 234 4.67e+01 c.1.18.3 86555 1orsC 132 4.70e+01 f.14.1.1 87353 1bf6A 291 4.88e+01 1pscA c.1.9.3 29065 1pv5A 264 4.94e+01 d.251.1.1 95150 1fr2B 134 4.99e+01 d.4.1.1 83257 1yewC 289 5.01e+01 2b49A 287 5.07e+01 3gcb 470 5.09e+01 3gcb d.3.1.1 37032 2a6sA 84 5.29e+01 1unlD 208 5.30e+01 1sk7A 198 5.43e+01 a.132.1.2 105671 1m65A 245 5.45e+01 c.6.3.1 84847 1h0pA 182 5.46e+01 b.62.1.1 76450 1z0kB 69 5.48e+01 1wkaA 147 5.53e+01 1s1pA 331 5.56e+01 c.1.7.1 98350 1i60A 278 5.63e+01 c.1.15.4 71118 1wlmA 151 5.66e+01 1wkqA 164 5.67e+01 c.97.1.2 109393 1iqvA 218 5.71e+01 1rss a.75.1.1 62661 2c4jA 218 5.73e+01 2erfA 209 5.79e+01 3htsB 102 5.85e+01 2hts a.4.5.22 16175 2fnaA 357 5.86e+01 2d5cA 263 5.92e+01 1mzgA 146 6.02e+01 d.224.1.1 79696 3thiA 371 6.09e+01 2thiA c.94.1.1 35792 1iybA 208 6.17e+01 d.124.1.1 90720 1fmcA 255 6.19e+01 1cydA c.2.1.2 29856 1ro2A 216 6.21e+01 d.264.1.2 97665 2f9zC 159 6.30e+01 1wzcA 249 6.37e+01 1y4tA 322 6.41e+01 2ch0A 133 6.47e+01 1wzzA 334 6.49e+01 1cs1A 386 6.59e+01 1ibjA c.67.1.3 34399 2ftwA 521 6.67e+01 2btdA 210 6.73e+01 1ash 150 6.75e+01 1ash a.1.1.2 15622 2gsfA 373 6.76e+01 1v58A 241 6.81e+01 c.47.1.9,d.17.3.1 108371,108372 1ustA 93 6.89e+01 a.4.5.13 99884 1pii 452 6.90e+01 1pii c.1.2.4,c.1.2.4 28559,28563 1lmzA 187 6.96e+01 a.96.1.4 74037 1hdoA 206 7.03e+01 1he2A c.2.1.2 60965 2b0tA 738 7.04e+01 1ucnA 152 7.08e+01 d.58.6.1 99183 2ctoA 93 7.14e+01 1a8l 226 7.15e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1s9jA 341 7.20e+01 1wm3A 72 7.24e+01 1us0A 316 7.33e+01 c.1.7.1 99850 1atzA 189 7.38e+01 1atzA c.62.1.1 34132 6rxn 46 7.41e+01 1rb9 g.41.5.1 45222 1xu9A 286 7.49e+01 1ignA 246 7.54e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 1x6oA 174 7.65e+01 b.34.5.2,b.40.4.5 109493,109494 1pdo 135 7.73e+01 1pdo c.54.1.1 33376 2bg5A 324 7.74e+01 2al3A 90 7.83e+01 1xkpB 124 7.86e+01 2gz4A 207 7.92e+01 1o2dA 371 7.96e+01 e.22.1.2 86591 1vk6A 269 7.99e+01 d.113.1.4,d.113.1.4 100851,100852 1kxvC 121 8.03e+01 b.1.1.1 73190 1ff9A 450 8.09e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1jz8A 1023 8.24e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1r6uA 437 8.40e+01 c.26.1.1 97163 1mgrA 99 8.47e+01 d.1.1.2 79106 1uluA 261 8.49e+01 1psrA 100 8.56e+01 1psrA a.39.1.2 17180 1vf1A 229 8.62e+01 1q7zA 566 8.89e+01 c.1.21.2,c.1.26.1 96090,96091 1dcs 311 8.92e+01 1dcs b.82.2.1 28124 2aaxA 275 8.94e+01 2cz1B 212 8.97e+01