# List of top-scoring protein chains for T0347.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gawA 314 3.94e+00 1fnc b.43.4.2,c.25.1.1 25643,31533 1ne7A 289 4.74e+00 c.124.1.1 91833 1frqA 314 7.78e+00 1fnc b.43.4.2,c.25.1.1 25632,31522 1bx0A 314 7.79e+00 1fnc b.43.4.2,c.25.1.1 25630,31520 1bx1A 314 7.83e+00 1fnc b.43.4.2,c.25.1.1 25629,31519 1frn 314 8.08e+00 1fnc b.43.4.2,c.25.1.1 25631,31521 1fnd 314 8.14e+00 1fnc b.43.4.2,c.25.1.1 25626,31516 2ffhA 425 9.91e+00 1ng1 a.24.13.1,a.36.1.1,c.37.1.10 16965,17122,32276 1nnhA 294 9.95e+00 d.104.1.1 92005 1xhnA 184 1.01e+01 1yj5A 383 1.02e+01 1t70A 255 1.12e+01 1qfzA 308 1.17e+01 1fnc b.43.4.2,c.25.1.1 25633,31523 1qgaA 308 1.18e+01 1fnc b.43.4.2,c.25.1.1 25637,31527 1qg0A 308 1.19e+01 1fnc b.43.4.2,c.25.1.1 25639,31529 1sm4A 296 1.35e+01 b.43.4.2,c.25.1.1 98913,98914 1tsjA 139 1.44e+01 1rqgA 722 1.76e+01 a.27.1.1,c.26.1.1,g.41.1.1 105063,105064,105065 1lmzA 187 2.16e+01 a.96.1.4 74037 1u54A 291 2.24e+01 d.144.1.7 107675 1u46A 291 2.27e+01 d.144.1.7 107656 1wn1A 356 2.31e+01 1kr0A 273 2.42e+01 c.1.8.5 68845 1wh0A 134 2.49e+01 1xb4A 202 2.85e+01 1gerA 450 2.93e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30477,30478,40170 1gesA 450 3.12e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1i10A 331 3.18e+01 3ldh c.2.1.5,d.162.1.1 61499,61500 1spxA 278 3.20e+01 c.2.1.2 98958 1kiyA 374 3.47e+01 a.128.1.5 72555 2gdqA 382 3.52e+01 1l5aA 436 3.59e+01 c.43.1.2,c.43.1.2 75923,75924 2fxqA 264 3.61e+01 1kqzA 273 3.76e+01 c.1.8.5 68844 1kr1A 273 3.85e+01 c.1.8.5 68846 2aelA 374 3.86e+01 1jfgA 374 3.87e+01 a.128.1.5 66636 1yyqA 374 3.88e+01 1xkqA 280 3.95e+01 2fhfA 1083 4.01e+01 1s2oA 244 4.26e+01 1y6zA 263 4.41e+01 1s1hD 179 4.42e+01 i.1.1.1 105157 1yo7A 120 4.78e+01 1y9kA 157 4.80e+01 1broA 277 4.84e+01 1brt c.69.1.12 34700 1a8uA 277 4.93e+01 1brt c.69.1.12 34703 2cuaA 135 5.02e+01 2cuaA b.6.1.2 23039 2fwlB 136 5.07e+01 1mk3A 178 5.12e+01 f.1.4.1 84978 1o20A 427 5.12e+01 c.82.1.1 86556 1yy7A 213 5.14e+01 1ldm 329 5.16e+01 3ldh c.2.1.5,d.162.1.1 30160,42127 6ldh 330 5.16e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 1zs9A 261 5.26e+01 1i19A 561 5.70e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1n8yC 608 5.75e+01 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 80314,80315,80316,80317 1xvxA 312 5.78e+01 1xmeB 168 5.88e+01 1sogA 294 5.91e+01 a.93.1.1 105844 1stqA 294 6.00e+01 a.93.1.1 106008 1a2g 291 6.36e+01 1ryc a.93.1.1 18620 1yfbA 59 6.44e+01 1q8gA 166 6.67e+01 d.109.1.2 104555 1brt 277 6.77e+01 1brt c.69.1.12 34699 2hvm 273 7.49e+01 1cnv c.1.8.5 28985 1gsuA 219 7.58e+01 1b8xA a.45.1.1,c.47.1.5 17661,32955 2arzA 247 7.84e+01 1siyA 91 7.85e+01 1k2aA 136 8.41e+01 d.5.1.1 72005 2c12A 439 8.42e+01 1xa6A 466 8.42e+01 1pmt 203 8.45e+01 1a0fA a.45.1.1,c.47.1.5 17740,33034 1vffA 423 8.48e+01 1gqvA 135 8.77e+01 d.5.1.1 70376 1c72A 219 8.84e+01 1b8xA a.45.1.1,c.47.1.5 17663,32957 1vrxA 358 8.85e+01 2cwaA 263 8.89e+01 1zccA 248 8.93e+01