Best Alignments for T0346

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1yndA/T0346-1yndA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yndA/T0346-1yndA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2296e-309.58e-116
1dywA/T0346-1dywA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dywA/T0346-1dywA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3075e-307.06e-116 2cpl b.62.1.1
2bitX/T0346-2bitX-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bitX/T0346-2bitX-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3681e-307.93e-116
1ihgA/T0346-1ihgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ihgA/T0346-1ihgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6544e-305.25e-111 2cpl a.118.8.1
b.62.1.1
1xo7A/T0346-1xo7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xo7A/T0346-1xo7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.1498e-303.68e-115
1zcxA/T0346-1zcxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zcxA/T0346-1zcxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1158e-295.68e-113
2cfeA/T0346-2cfeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cfeA/T0346-2cfeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.8625e-291.92e-111
1vdnA/T0346-1vdnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vdnA/T0346-1vdnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2762e-283.28e-109
2a2nA/T0346-2a2nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a2nA/T0346-2a2nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.0780e-274.86e-104
1zkcA/T0346-1zkcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zkcA/T0346-1zkcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.4362e-278.42e-102

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001