# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bitX 165 2.46e-39 1awsA 164 3.95e-39 2cpl b.62.1.1 27431 1awqA 164 4.24e-39 2cpl b.62.1.1 27461 2cpl 165 4.56e-39 2cpl b.62.1.1 27420 1cwoA 165 4.59e-39 2cpl b.62.1.1 27445 1yndA 165 5.09e-39 1dywA 173 8.02e-39 2cpl b.62.1.1 27505 2rmcA 182 2.45e-38 2cpl b.62.1.1 27491 1ihgA 370 2.60e-38 2cpl a.118.8.1,b.62.1.1 62380,62381 1a58 177 2.65e-38 2cpl b.62.1.1 27495 1zcxA 178 4.58e-38 1qoiA 177 8.23e-38 2cpl b.62.1.1 27490 2cfeA 162 1.57e-37 1xo7A 166 2.34e-37 1vdnA 162 2.63e-37 1h0pA 182 5.85e-37 b.62.1.1 76450 2a2nA 176 3.81e-35 1zkcA 197 9.06e-35 1xwnA 174 2.56e-34 2fu0A 160 1.50e-33 2b71A 196 7.59e-33 1j2aA 166 3.85e-29 b.62.1.1 90779 1v9tA 166 7.02e-29 b.62.1.1 108451 1lopA 164 1.68e-28 2cpl b.62.1.1 27510 1clh 166 4.99e-28 2cpl b.62.1.1 27512 1zx8A 136 4.36e-02 1mxiA 160 1.92e-01 c.116.1.1 79646 1qupA 222 4.30e+00 1qupA b.1.8.1,d.58.17.1 22301,39352 1b77A 228 5.86e+00 1b77A d.131.1.2,d.131.1.2 41362,41363 1ezwA 349 6.02e+00 1ezwA c.1.16.3 29558 1gc1H 229 6.47e+00 1gc1H b.1.1.1,b.1.1.2 20265,21265 1vr0A 247 7.38e+00 2gk3A 256 7.69e+00 2b8mA 117 8.43e+00 1g7fA 298 8.99e+00 1pty c.45.1.2 60330 1mdbA 539 9.28e+00 e.23.1.1 79008 1qmpA 130 9.66e+00 1dz3A c.23.1.1 31106 1wriA 93 1.06e+01 1r3nA 462 1.25e+01 c.56.5.4,d.58.19.1 96945,96946 1gggA 226 1.44e+01 1lst c.94.1.1 35817 1wloA 136 1.46e+01 1c0eA 157 1.51e+01 1dg9A c.44.1.1 32638 1dz3A 130 1.55e+01 1dz3A c.23.1.1 31105 1wggA 96 1.62e+01 1rx0A 393 1.64e+01 a.29.3.1,e.6.1.1 98007,98008 1sq2N 113 1.77e+01 b.1.1.1 105881 1ciy 590 1.83e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1oa4A 222 1.86e+01 b.29.1.11 86731 1gggB 226 1.87e+01 1lst c.94.1.1 35818 1bf8 205 2.03e+01 1qpxA b.1.11.1,b.7.2.1 22332,23214 1svmA 377 2.25e+01 1wdnA 226 2.33e+01 1lst c.94.1.1 35816 1zoxA 113 2.44e+01 1uunA 184 2.46e+01 f.6.1.2 100012 1agx 331 2.51e+01 4pgaA c.88.1.1 35564 1vqvA 306 2.52e+01 1do6A 124 2.57e+01 1do6A b.1.13.1 22361 1fnhA 271 2.72e+01 1fnhA b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 1si6X 282 2.83e+01 1zk5A 176 2.89e+01 1sglA 209 2.90e+01 d.124.1.1 105536 1k87A 669 3.10e+01 a.176.1.1,c.1.23.2 77286,77287 2f71A 298 3.14e+01 1pvtA 238 3.18e+01 c.74.1.1 95189 1a49A 530 3.18e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 1wu7A 434 3.19e+01 2b4wA 315 3.23e+01 1y21A 282 3.28e+01 1b2iA 83 3.35e+01 5hpgA g.14.1.1 44640 1pa1A 310 3.49e+01 c.45.1.2 94404 1s8nA 205 3.57e+01 c.23.1.1 105374 1rlhA 173 3.63e+01 d.256.1.1 97646 1eeoA 321 3.70e+01 1pty c.45.1.2 32655 1dg9A 157 3.71e+01 1dg9A c.44.1.1 32637 1aax 321 3.78e+01 1pty c.45.1.2 32657 1phr 157 3.78e+01 1dg9A c.44.1.1 32635 1iw2A 182 3.80e+01 b.60.1.1 71468 1lf7A 182 3.81e+01 b.60.1.1 73878 1x9uA 116 3.95e+01 1e9pA 151 3.97e+01 1mfmA b.1.8.1 22215 1dqiA 124 3.98e+01 1do6A b.1.13.1 22357 2ex4A 241 3.98e+01 1ntfA 282 4.04e+01 d.151.1.2 92104 1xeeA 91 4.10e+01 1o04A 500 4.12e+01 c.82.1.1 86508 1a8s 273 4.13e+01 1brt c.69.1.12 34710 2fimA 276 4.13e+01 1kq4A 232 4.19e+01 d.207.1.1 68791 1q5fA 156 4.45e+01 d.24.1.1 104536 2pkaA 80 4.47e+01 2pkaA b.47.1.2 26302 1j71A 334 4.49e+01 1eagA b.50.1.2 62669 1gm6A 175 4.51e+01 b.60.1.1 70272 1r4wA 226 4.58e+01 c.47.1.13 97050 2cwsA 237 4.63e+01 1xwwA 157 4.65e+01 1lq9A 112 4.66e+01 d.58.4.3 78129 1f0iA 504 4.68e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1v0wA 506 4.69e+01 d.136.1.2,d.136.1.2 108220,108221 1httA 423 4.71e+01 1adjA c.51.1.1,d.104.1.1 33178,40727 1ffk1 177 4.73e+01 1ffk1 1barA 140 4.77e+01 1bfg b.42.1.1 25504 1yo1A 260 4.81e+01 1amm 174 4.88e+01 1amm b.11.1.1,b.11.1.1 23587,23588 4gcr 174 4.88e+01 1amm b.11.1.1,b.11.1.1 23589,23590 1yoxA 250 4.89e+01 1bqcA 302 4.94e+01 1bqcA c.1.8.3 28831 1ptvA 321 5.05e+01 1pty c.45.1.2 32665 2bdvA 231 5.05e+01 1mooA 260 5.09e+01 b.74.1.1 79359 1z4xA 532 5.21e+01 1ux6A 350 5.29e+01 b.29.1.16,g.75.1.1 100145,100146 1vqoD 177 5.33e+01 1z4vA 532 5.35e+01 1f24A 402 5.37e+01 1rom a.104.1.1 18953 1zirA 173 5.37e+01 1yzxA 226 5.46e+01 1cbjA 151 5.56e+01 1mfmA b.1.8.1 22213 1v3rA 116 5.60e+01 1wchA 315 5.61e+01 1jfbA 404 5.67e+01 a.104.1.1 66624 1q0eA 152 5.68e+01 b.1.8.1 95504 1mua 256 5.68e+01 2cba b.74.1.1 27831 1w96A 554 5.70e+01 1o26A 232 5.80e+01 d.207.1.1 86566 1o9wA 177 5.82e+01 b.2.3.5 86713 2pii 112 5.83e+01 2pii d.58.5.1 39071 1vi6A 208 5.90e+01 c.23.15.1 100736 1ve4A 206 5.98e+01 1jj2D 176 6.00e+01 1ffkD d.77.1.1 63088 2aexA 346 6.03e+01 1o7iA 119 6.04e+01 b.40.4.3 86642 1qwgA 251 6.04e+01 c.1.27.1 96473 1m8uA 173 6.10e+01 b.11.1.1,b.11.1.1 91233,91234 2azpA 318 6.13e+01 1bv8A 138 6.16e+01 1ayoA b.2.4.1 22430 2b06A 155 6.30e+01 1vfjA 116 6.37e+01 1jatB 138 6.37e+01 1jatB d.20.1.1 62819 2b7yA 182 6.42e+01 1xm0A 147 6.53e+01 1n25A 368 6.53e+01 c.37.1.20 85264 1dc1A 323 6.53e+01 1dc1A c.52.1.11 33321 1lugA 259 6.54e+01 b.74.1.1 91127 1kv9A 668 6.60e+01 a.3.1.6,b.70.1.1 73056,73057 1j5eE 161 6.60e+01 d.14.1.1,d.50.1.2 71547,71548 1m2xA 223 6.64e+01 d.157.1.1 84764 1fjgE 162 6.80e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1wn0A 145 6.84e+01 1u0sY 118 6.85e+01 c.23.1.1 107566 1bvh 157 6.88e+01 1dg9A c.44.1.1 32640 1usuB 170 6.90e+01 d.83.2.1 99886 1a45 173 6.94e+01 1amm b.11.1.1,b.11.1.1 23602,23603 1p63A 144 7.06e+01 b.42.1.1 94153 1eysH 259 7.08e+01 6prcH b.41.1.1,f.23.10.1 25484,43517 2c1dB 137 7.23e+01 2g6yA 217 7.28e+01 1z2lA 423 7.31e+01 2cba 260 7.34e+01 2cba b.74.1.1 27821 1pbyA 489 7.47e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 2kaiA 80 7.58e+01 2pkaA b.47.1.2 26306 1tmy 120 7.69e+01 1dbwA c.23.1.1 31083 1rypK 198 7.91e+01 d.153.1.4 41879 1pil 112 7.96e+01 2pii d.58.5.1 39072 1frrA 95 8.03e+01 1awd d.15.4.1 37674 1dim 381 8.09e+01 3sil b.68.1.1 27544 1jer 138 8.11e+01 2cbp b.6.1.1 23022 1pn0A 665 8.12e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1rom 403 8.16e+01 1rom a.104.1.1 18963 1a70 97 8.25e+01 1awd d.15.4.1 37678 1jqzA 146 8.31e+01 b.42.1.1 67109 2bm3A 166 8.42e+01 1h4xA 117 8.63e+01 1auz c.13.2.1 60626 2sodB 152 8.70e+01 1mfmA b.1.8.1 22242 1w0pA 781 8.76e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040