# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1awqA 164 4.05e-37 2cpl b.62.1.1 27461 1yndA 165 5.70e-37 1awsA 164 6.07e-37 2cpl b.62.1.1 27431 2cpl 165 6.52e-37 2cpl b.62.1.1 27420 1cwoA 165 1.17e-36 2cpl b.62.1.1 27445 2bitX 165 1.56e-36 1qoiA 177 3.66e-36 2cpl b.62.1.1 27490 1dywA 173 5.98e-36 2cpl b.62.1.1 27505 2rmcA 182 7.74e-36 2cpl b.62.1.1 27491 1zcxA 178 1.91e-35 1a58 177 1.92e-35 2cpl b.62.1.1 27495 2cfeA 162 2.04e-35 1xo7A 166 2.22e-35 1vdnA 162 5.65e-35 1h0pA 182 1.62e-34 b.62.1.1 76450 1ihgA 370 2.21e-34 2cpl a.118.8.1,b.62.1.1 62380,62381 2a2nA 176 4.21e-33 1xwnA 174 3.81e-32 1zkcA 197 5.48e-32 2fu0A 160 3.07e-31 2b71A 196 2.04e-30 1j2aA 166 4.75e-28 b.62.1.1 90779 1v9tA 166 7.20e-28 b.62.1.1 108451 1lopA 164 9.54e-28 2cpl b.62.1.1 27510 1clh 166 4.70e-27 2cpl b.62.1.1 27512 1zx8A 136 6.19e-01 1mxiA 160 1.24e+00 c.116.1.1 79646 1icpA 376 1.86e+00 1oyc c.1.4.1 62270 1fj2A 232 3.49e+00 1auoA c.69.1.14 34720 1pswA 348 3.93e+00 c.87.1.7 88287 1ituA 369 4.05e+00 c.1.9.7 71423 1dctA 324 6.12e+00 6mhtA c.66.1.26 34244 1r3nA 462 6.24e+00 c.56.5.4,d.58.19.1 96945,96946 1w96A 554 6.51e+00 1o6zA 303 6.61e+00 c.2.1.5,d.162.1.1 81107,81108 1yoxA 250 7.10e+00 1kbvA 327 7.36e+00 b.6.1.3,b.6.1.3 68395,68396 1sglA 209 1.33e+01 d.124.1.1 105536 2a1rA 430 1.58e+01 1s31A 273 1.60e+01 1z41A 338 1.70e+01 1n25A 368 1.75e+01 c.37.1.20 85264 1b97A 244 1.82e+01 1rvaA c.52.1.2 33252 1h8uA 117 1.88e+01 1h8uA d.169.1.1 60793 1rvaA 244 1.88e+01 1rvaA c.52.1.2 33240 1m3iA 471 1.88e+01 f.9.1.1 91178 1b96A 244 1.93e+01 1rvaA c.52.1.2 33268 1b94A 244 1.95e+01 1rvaA c.52.1.2 33250 1bssA 244 1.96e+01 1rvaA c.52.1.2 33256 1m3jA 471 2.13e+01 f.9.1.1 91182 1zirA 173 2.13e+01 1gvoA 364 2.14e+01 c.1.4.1 76357 2aexA 346 2.19e+01 1sx5A 244 2.32e+01 c.52.1.2 99023 1a5dA 173 2.39e+01 1amm b.11.1.1,b.11.1.1 23614,23615 1h61A 364 2.39e+01 1oyc c.1.4.1 60657 1vypX 364 2.42e+01 c.1.4.1 108905 1zoxA 113 2.55e+01 2gefA 217 2.77e+01 1pfo 500 2.87e+01 1pfo f.9.1.1 43826 1vqvA 306 2.88e+01 2b4wA 315 2.97e+01 2bdrA 175 3.16e+01 1wl8A 189 3.18e+01 1vhoA 346 3.36e+01 b.49.3.1,c.56.5.4 100694,100695 1rx0A 393 3.36e+01 a.29.3.1,e.6.1.1 98007,98008 1o26A 232 3.54e+01 d.207.1.1 86566 1cz7A 406 3.61e+01 1bg2 c.37.1.9 32194 1uxjA 309 3.66e+01 c.2.1.5,d.162.1.1 108112,108113 1m8uA 173 3.68e+01 b.11.1.1,b.11.1.1 91233,91234 1uxy 340 3.70e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1hgxA 183 3.71e+01 1tc1A c.61.1.1 34027 2fp8A 322 3.74e+01 1zr5A 214 3.86e+01 1svmA 377 3.88e+01 1kq4A 232 3.93e+01 d.207.1.1 68791 1agjA 242 4.06e+01 1agjA b.47.1.1 25827 1uroA 367 4.10e+01 1uroA c.1.22.1 29675 1dgnA 89 4.16e+01 1dgnA a.77.1.3 18436 1bqcA 302 4.20e+01 1bqcA c.1.8.3 28831 1qlpA 394 4.21e+01 1ovaA e.1.1.1 42628 1j5qA 437 4.47e+01 b.121.2.3,b.121.2.3 77084,77085 1wraA 308 4.50e+01 2fug5 207 4.52e+01 1pa2A 306 4.54e+01 1bgp a.93.1.1 18693 2c1iA 431 4.60e+01 1qo2A 241 4.63e+01 1qo2A c.1.2.1 28533 1r3sA 367 4.72e+01 c.1.22.1 96963 1ivwA 638 4.73e+01 b.30.2.1,d.17.2.1,d.17.2.1 71456,71457,71458 1u9lA 70 4.77e+01 a.60.4.2 107751 2mbr 340 4.80e+01 2mbr d.145.1.2,d.146.1.1 41749,41762 1rypI 222 4.94e+01 d.153.1.4 41877 1a45 173 5.01e+01 1amm b.11.1.1,b.11.1.1 23602,23603 1m3yA 413 5.02e+01 b.121.2.3,b.121.2.3 78579,78580 1vyrA 364 5.04e+01 c.1.4.1 108906 1amm 174 5.06e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1ur5A 309 5.10e+01 c.2.1.5,d.162.1.1 99807,99808 1qreA 247 5.11e+01 1qreA b.81.1.5 28066 1ku2A 241 5.17e+01 a.4.13.1,a.177.1.1 83096,83097 1vkdA 338 5.39e+01 b.67.2.4 108644 1nbfA 353 5.50e+01 d.3.1.9 80387 2c1gA 431 5.52e+01 1sr2A 116 5.53e+01 2airB 153 5.62e+01 1m5sA 297 5.66e+01 d.58.33.1,d.58.33.1 74511,74512 1mdbA 539 5.91e+01 e.23.1.1 79008 1c8zA 265 5.94e+01 1c8zA d.23.1.1 38375 1j1iA 296 6.08e+01 c.69.1.10 83977 6mhtA 327 6.15e+01 6mhtA c.66.1.26 34226 1zk5A 176 6.19e+01 2abbA 364 6.25e+01 1fjxA 327 6.45e+01 6mhtA c.66.1.26 34228 1iqyA 638 6.45e+01 b.30.2.1,d.17.2.1,d.17.2.1 76763,76764,76765 2b7oA 464 6.48e+01 4gcr 174 6.53e+01 1amm b.11.1.1,b.11.1.1 23589,23590 1wdnA 226 6.56e+01 1lst c.94.1.1 35816 3mhtA 327 6.74e+01 6mhtA c.66.1.26 34234 1nogA 177 6.95e+01 a.25.2.2 85923 2b49A 287 7.10e+01 1kzqA 289 7.12e+01 b.6.2.1,b.6.2.1 73374,73375 1qmpA 130 7.17e+01 1dz3A c.23.1.1 31106 1z7gA 217 7.25e+01 2fox 138 7.26e+01 5nul c.23.5.1 31197 1mr3F 181 7.37e+01 c.37.1.8 79422 2gk3A 256 7.41e+01 1gpmA 525 7.43e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1u5uA 374 7.50e+01 2c7pA 327 7.53e+01 2bibA 547 7.56e+01 1elpA 173 7.64e+01 1amm b.11.1.1,b.11.1.1 23596,23597 1zgmA 248 7.65e+01 1j7xA 302 7.67e+01 c.14.1.2 66425 1w6uA 302 7.94e+01 2madH 373 8.17e+01 2bbkH b.69.2.1 27639 2et1A 201 8.31e+01 5nul 138 8.38e+01 5nul c.23.5.1 31191 1fx2A 235 8.57e+01 1fx2A d.58.29.1 39430 2fnoA 248 8.60e+01 1pg5A 299 8.72e+01 c.78.1.1,c.78.1.1 104146,104147 1htrB 329 8.89e+01 1smrA 1kn1A 160 8.91e+01 a.1.1.3 77455 1a5kC 566 8.92e+01 1ubpC b.92.1.1,c.1.9.2 28425,29047 2fvx 138 8.97e+01 5nul c.23.5.1 31200