# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yndA 165 8.35e-40 2bitX 165 1.38e-39 1dywA 173 5.98e-39 2cpl b.62.1.1 27505 1xo7A 166 7.01e-39 1zcxA 178 1.18e-38 2rmcA 182 1.30e-38 2cpl b.62.1.1 27491 2cfeA 162 2.02e-38 1ihgA 370 2.65e-38 2cpl a.118.8.1,b.62.1.1 62380,62381 1vdnA 162 9.25e-38 1h0pA 182 1.65e-37 b.62.1.1 76450 2a2nA 176 4.35e-36 1zkcA 197 2.16e-35 2fu0A 160 4.02e-34 1v9tA 166 1.70e-30 b.62.1.1 108451 1lopA 164 3.11e-30 2cpl b.62.1.1 27510 1zx8A 136 6.65e-02 1icpA 376 8.98e-02 1oyc c.1.4.1 62270 1q45A 391 5.29e-01 c.1.4.1 95780 1dgnA 89 1.16e+00 1dgnA a.77.1.3 18436 1zroA 602 2.43e+00 1vyrA 364 2.45e+00 c.1.4.1 108906 2fug5 207 2.69e+00 1mxiA 160 2.98e+00 c.116.1.1 79646 1yoxA 250 3.21e+00 2gk3A 256 3.21e+00 1vqvA 306 5.96e+00 1o26A 232 6.63e+00 d.207.1.1 86566 2gcuA 245 7.91e+00 1kbvA 327 7.97e+00 b.6.1.3,b.6.1.3 68395,68396 1ufbA 127 8.63e+00 a.24.16.3 99331 1vjvA 415 8.79e+00 d.3.1.9 108632 1k66A 149 9.26e+00 c.23.1.1 90941 1oktA 211 1.02e+01 a.45.1.1,c.47.1.5 93272,93273 1eo6A 117 1.07e+01 1eo6A d.15.1.3 37609 2bdrA 175 1.17e+01 1zgkA 308 1.19e+01 1ve2A 235 1.22e+01 1fj2A 232 1.33e+01 1auoA c.69.1.14 34720 1c4rA 182 1.49e+01 1c4rA b.29.1.4 24229 1z2lA 423 1.53e+01 1kzqA 289 1.69e+01 b.6.2.1,b.6.2.1 73374,73375 1dz3A 130 1.78e+01 1dz3A c.23.1.1 31105 2aawA 222 1.83e+01 2aeuA 374 1.89e+01 2dd8S 202 2.02e+01 1ituA 369 2.07e+01 c.1.9.7 71423 1vr0A 247 2.23e+01 2b4wA 315 2.25e+01 1zirA 173 2.28e+01 2fug7 129 2.56e+01 1z41A 338 2.63e+01 2jdxA 385 2.67e+01 1jdw d.126.1.2 41139 1yd9A 193 2.76e+01 1h4xA 117 2.78e+01 1auz c.13.2.1 60626 1ukcA 522 2.84e+01 c.69.1.17 107911 2aexA 346 2.84e+01 1r3sA 367 2.92e+01 c.1.22.1 96963 2gefA 217 2.95e+01 1wraA 308 2.96e+01 1sxvA 172 3.01e+01 1e5kA 201 3.07e+01 1fr9A c.68.1.8 34578 1i3cA 149 3.07e+01 c.23.1.1 71112 1ml4A 308 3.08e+01 c.78.1.1,c.78.1.1 79255,79256 1kgsA 225 3.19e+01 a.4.6.1,c.23.1.1 68596,68597 1uocA 289 3.21e+01 c.55.3.9 99686 2fx0A 201 3.43e+01 2cy7A 396 3.43e+01 2c1iA 431 3.51e+01 1f8rA 498 3.54e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1ia8A 289 3.60e+01 1ia8A d.144.1.7 62112 1h7sA 365 3.71e+01 d.14.1.3,d.122.1.2 65705,65706 1gzcA 239 3.71e+01 b.29.1.1 70803 1pfo 500 3.72e+01 1pfo f.9.1.1 43826 1wi1A 126 3.75e+01 1k87A 669 3.93e+01 a.176.1.1,c.1.23.2 77286,77287 2gfhA 260 4.04e+01 1oflA 481 4.07e+01 b.80.1.4 103934 2bce 581 4.09e+01 2bce c.69.1.1 34625 1vkcA 158 4.09e+01 1gnlA 544 4.16e+01 e.26.1.1 70287 1qv9A 283 4.26e+01 c.127.1.1 96356 1m0uA 249 4.61e+01 a.45.1.1,c.47.1.5 78359,78360 1tmy 120 4.63e+01 1dbwA c.23.1.1 31083 1m8uA 173 4.78e+01 b.11.1.1,b.11.1.1 91233,91234 1jk7A 323 4.81e+01 1auiA d.159.1.3 63144 1s8nA 205 4.86e+01 c.23.1.1 105374 1vfvA 366 4.94e+01 c.37.1.9 108592 1r6wA 322 4.98e+01 c.1.11.2,d.54.1.1 97165,97166 1hu3A 260 5.00e+01 1hu3A a.118.1.14 19137 1gntA 553 5.06e+01 e.26.1.1 70290 1o04A 500 5.09e+01 c.82.1.1 86508 1rx0A 393 5.17e+01 a.29.3.1,e.6.1.1 98007,98008 1k92A 455 5.20e+01 c.26.2.1,d.210.1.1 68325,68326 1ww8A 439 5.39e+01 1jdw 423 5.43e+01 1jdw d.126.1.2 41129 1wpoA 256 5.55e+01 1lay b.57.1.1 27012 1pm3A 78 5.63e+01 b.41.1.2 94889 1vq2A 193 5.99e+01 1vhqA 232 6.10e+01 c.23.16.2 100696 2bf6A 449 6.18e+01 1t64A 377 6.19e+01 c.42.1.2 106543 2fdiA 211 6.21e+01 1zs9A 261 6.25e+01 1dk0A 188 6.25e+01 1b2vA d.35.1.1 38530 1wdnA 226 6.27e+01 1lst c.94.1.1 35816 1j1nA 492 6.31e+01 c.94.1.1 83978 1oyc 400 6.43e+01 1oyc c.1.4.1 28603 1qr0A 228 6.62e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1vfjA 116 6.65e+01 1lf7A 182 6.85e+01 b.60.1.1 73878 2d1pC 95 6.96e+01 1xd8A 289 7.08e+01 1pmy 123 7.21e+01 1bqk b.6.1.1 22888 1yovA 537 7.39e+01 1k4nA 192 7.56e+01 d.32.1.5 72059 1ka2A 499 7.66e+01 d.92.1.5 77305 1dqiA 124 7.81e+01 1do6A b.1.13.1 22357 1mvoA 136 7.83e+01 c.23.1.1 79513 1fonA 240 8.06e+01 5ptp b.47.1.2 26231 1ujlA 42 8.06e+01 j.12.1.1 99459 2f20A 240 8.31e+01 1cp2A 269 8.40e+01 1cp2A c.37.1.10 32269 1whrA 124 8.53e+01 1wjtA 103 8.54e+01 1yviA 149 8.64e+01 1kg0C 136 8.69e+01 d.169.1.1 72445 3sil 379 8.70e+01 3sil b.68.1.1 27542 1p2hA 571 8.75e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 4ubpC 570 8.75e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 2scpA 174 8.77e+01 2scpA a.39.1.5 17256 1u0sY 118 8.79e+01 c.23.1.1 107566 1dqwA 267 8.81e+01 1dqwA c.1.2.3 28551 1w5fA 353 8.97e+01