# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bitX 165 6.63e-42 1yndA 165 1.62e-41 1dywA 173 3.38e-41 2cpl b.62.1.1 27505 1ihgA 370 3.83e-41 2cpl a.118.8.1,b.62.1.1 62380,62381 1zcxA 178 1.10e-40 1xo7A 166 5.53e-40 1vdnA 162 7.33e-40 2cfeA 162 8.57e-40 2rmcA 182 8.57e-40 2cpl b.62.1.1 27491 1h0pA 182 5.22e-39 b.62.1.1 76450 2a2nA 176 1.60e-37 1zkcA 197 4.84e-37 2fu0A 160 2.40e-35 1v9tA 166 1.48e-31 b.62.1.1 108451 1lopA 164 2.36e-30 2cpl b.62.1.1 27510 1zx8A 136 8.72e-03 1wu7A 434 5.36e-01 2f71A 298 8.15e-01 1mxiA 160 1.23e+00 c.116.1.1 79646 1pa1A 310 1.42e+00 c.45.1.2 94404 1vqvA 306 3.31e+00 1o04A 500 3.49e+00 c.82.1.1 86508 1vr0A 247 3.99e+00 1wdnA 226 4.46e+00 1lst c.94.1.1 35816 1h7sA 365 5.06e+00 d.14.1.3,d.122.1.2 65705,65706 2gk3A 256 5.13e+00 1wchA 315 5.59e+00 1v0wA 506 6.54e+00 d.136.1.2,d.136.1.2 108220,108221 1wriA 93 7.17e+00 1yymG 313 7.39e+00 1dqiA 124 7.78e+00 1do6A b.1.13.1 22357 2cy7A 396 7.85e+00 1vjvA 415 8.34e+00 d.3.1.9 108632 1z4vA 532 8.53e+00 1sr4B 261 8.71e+00 d.151.1.1 105949 2ex4A 241 8.97e+00 1dz3A 130 8.97e+00 1dz3A c.23.1.1 31105 1gteA 1025 9.43e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1bdfA 235 9.62e+00 1bdfA d.74.3.1,d.181.1.1 39727,42602 1p42A 270 1.01e+01 d.14.1.7,d.14.1.7 87754,87755 1c4rA 182 1.08e+01 1c4rA b.29.1.4 24229 2cqsA 842 1.08e+01 1vqoD 177 1.14e+01 1evlA 401 1.22e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 2a46A 238 1.38e+01 1wloA 136 1.42e+01 2as9A 210 1.46e+01 1k87A 669 1.47e+01 a.176.1.1,c.1.23.2 77286,77287 1oa4A 222 1.67e+01 b.29.1.11 86731 1ezwA 349 1.74e+01 1ezwA c.1.16.3 29558 1lam 484 1.98e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1vfjA 116 2.04e+01 1vi2A 300 2.05e+01 c.2.1.7,c.58.1.5 100726,100727 1wi1A 126 2.05e+01 1q0eA 152 2.10e+01 b.1.8.1 95504 1b77A 228 2.11e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1khbA 625 2.17e+01 c.91.1.1,c.109.1.1 68606,68607 1e9pA 151 2.19e+01 1mfmA b.1.8.1 22215 1ux6A 350 2.29e+01 b.29.1.16,g.75.1.1 100145,100146 2bdrA 175 2.34e+01 1j58A 385 2.42e+01 b.82.1.2 71531 2b8mA 117 2.43e+01 1y7mA 164 2.44e+01 1umkA 275 2.45e+01 1xhnA 184 2.48e+01 1sq2N 113 2.51e+01 b.1.1.1 105881 1a8s 273 2.55e+01 1brt c.69.1.12 34710 1q1oA 98 2.56e+01 d.15.2.2 95596 1lq9A 112 2.67e+01 d.58.4.3 78129 1s8nA 205 2.69e+01 c.23.1.1 105374 1h4xA 117 2.76e+01 1auz c.13.2.1 60626 1t2bA 397 2.98e+01 1fs0E 138 3.01e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1v9sA 208 3.20e+01 1lehA 364 3.38e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1e5kA 201 3.41e+01 1fr9A c.68.1.8 34578 1i6aA 219 3.51e+01 c.94.1.1 61827 1dkiA 371 3.56e+01 1dkiA d.3.1.1 37090 1ww9A 392 3.63e+01 1qx4A 274 3.69e+01 b.43.4.2,c.25.1.1 104624,104625 2cy5A 140 3.71e+01 1pjcA 361 3.75e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1op4A 159 4.07e+01 b.1.6.1 93397 1qcsA 211 4.09e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 2bvfA 459 4.10e+01 1ieaB 228 4.13e+01 1iakB b.1.1.2,d.19.1.1 21632,38206 1vyrA 364 4.20e+01 c.1.4.1 108906 1yzxA 226 4.23e+01 1qwgA 251 4.25e+01 c.1.27.1 96473 1frrA 95 4.28e+01 1awd d.15.4.1 37674 1ewnA 219 4.30e+01 1bnkA b.46.1.2 25762 1ve4A 206 4.34e+01 2coeA 120 4.35e+01 1fjgE 162 4.39e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 2bf6A 449 4.48e+01 2gclA 261 4.68e+01 1v25A 541 4.76e+01 e.23.1.1 108275 2aexA 346 4.76e+01 1ve2A 235 4.81e+01 1i3cA 149 4.88e+01 c.23.1.1 71112 1erjA 393 5.02e+01 1erjA b.69.4.1 27660 1pv5A 264 5.06e+01 d.251.1.1 95150 1vkdA 338 5.06e+01 b.67.2.4 108644 1j71A 334 5.17e+01 1eagA b.50.1.2 62669 1dg9A 157 5.31e+01 1dg9A c.44.1.1 32637 1o7iA 119 5.35e+01 b.40.4.3 86642 1vl4A 447 5.35e+01 d.283.1.1 108718 2fv7A 331 5.36e+01 1rx0A 393 5.51e+01 a.29.3.1,e.6.1.1 98007,98008 1q7hA 153 5.62e+01 b.122.1.1,d.17.6.2 96042,96043 1ukcA 522 5.69e+01 c.69.1.17 107911 1o9wA 177 5.70e+01 b.2.3.5 86713 2fomB 185 5.79e+01 1bed 181 5.81e+01 1fvkA c.47.1.13 90330 1p2hA 571 5.83e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1xwwA 157 5.89e+01 1a70 97 5.91e+01 1awd d.15.4.1 37678 1lb6A 160 6.05e+01 b.8.1.1 73798 1jatB 138 6.06e+01 1jatB d.20.1.1 62819 2gefA 217 6.17e+01 1zoxA 113 6.19e+01 1ntyA 311 6.41e+01 a.87.1.1,b.55.1.1 103873,103874 2gvkA 317 6.47e+01 2b49A 287 6.47e+01 1qlpA 394 6.79e+01 1ovaA e.1.1.1 42628 2bo9B 222 6.80e+01 1u0sY 118 6.88e+01 c.23.1.1 107566 1yr1A 119 6.98e+01 1uvqB 198 7.03e+01 b.1.1.2,d.19.1.1 100064,100065 1vi6A 208 7.18e+01 c.23.15.1 100736 1rypK 198 7.21e+01 d.153.1.4 41879 1tmy 120 7.24e+01 1dbwA c.23.1.1 31083 1xewX 182 7.27e+01 1vkbA 161 7.34e+01 d.269.1.1 108643 1qreA 247 7.37e+01 1qreA b.81.1.5 28066 1xeaA 323 7.41e+01 c.2.1.3,d.81.1.5 109572,109573 1lnsA 763 7.45e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2azpA 318 7.46e+01 1qe3A 489 7.51e+01 2bce c.69.1.1 34630 1o26A 232 7.59e+01 d.207.1.1 86566 1wisA 124 7.61e+01 1iznB 277 7.61e+01 e.43.1.2 83848 2b06A 155 7.62e+01 1g5bA 221 7.87e+01 1g5bA d.159.1.3 60261 1i12A 160 7.92e+01 1i21A d.108.1.1 61515 1s2oA 244 8.26e+01 1pvtA 238 8.33e+01 c.74.1.1 95189 2fug5 207 8.35e+01 2cb2A 318 8.41e+01 1thfD 253 8.44e+01 1thfD c.1.2.1 28535 1nszA 347 8.59e+01 b.30.5.4 80724 1mdbA 539 8.71e+01 e.23.1.1 79008 1q5fA 156 8.73e+01 d.24.1.1 104536 1oalA 151 8.78e+01 b.1.8.1 86739 1cr5A 189 8.83e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1e1oA 504 8.93e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1z5bA 469 8.96e+01