# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yndA 165 9.17e-38 2bitX 165 1.99e-37 1dywA 173 9.42e-37 2cpl b.62.1.1 27505 1xo7A 166 1.58e-36 2cfeA 162 1.99e-36 1zcxA 178 2.42e-36 2rmcA 182 7.12e-36 2cpl b.62.1.1 27491 1vdnA 162 9.51e-36 1h0pA 182 1.73e-35 b.62.1.1 76450 1ihgA 370 2.80e-35 2cpl a.118.8.1,b.62.1.1 62380,62381 2a2nA 176 5.42e-34 1zkcA 197 7.31e-33 2fu0A 160 1.13e-31 1v9tA 166 7.48e-29 b.62.1.1 108451 1lopA 164 2.99e-28 2cpl b.62.1.1 27510 1zx8A 136 9.78e-02 1icpA 376 2.49e-01 1oyc c.1.4.1 62270 1mxiA 160 3.68e-01 c.116.1.1 79646 2fug5 207 1.47e+00 1dgnA 89 1.83e+00 1dgnA a.77.1.3 18436 2bf6A 449 4.15e+00 1f7uA 607 4.72e+00 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1ufbA 127 5.19e+00 a.24.16.3 99331 1vjvA 415 6.04e+00 d.3.1.9 108632 1fj2A 232 6.81e+00 1auoA c.69.1.14 34720 1pfo 500 6.98e+00 1pfo f.9.1.1 43826 1q45A 391 7.36e+00 c.1.4.1 95780 1wraA 308 8.62e+00 1isiA 265 9.78e+00 e.4.1.1 71394 2bzgA 232 9.80e+00 1yoxA 250 9.84e+00 2aeuA 374 9.88e+00 1k4nA 192 1.05e+01 d.32.1.5 72059 1vyrA 364 1.12e+01 c.1.4.1 108906 1u9lA 70 1.15e+01 a.60.4.2 107751 1o26A 232 1.25e+01 d.207.1.1 86566 2bibA 547 1.29e+01 1vqvA 306 1.31e+01 1wdnA 226 1.49e+01 1lst c.94.1.1 35816 1h7sA 365 1.64e+01 d.14.1.3,d.122.1.2 65705,65706 1zroA 602 1.64e+01 2dd8S 202 2.01e+01 1wi1A 126 2.04e+01 1mdbA 539 2.05e+01 e.23.1.1 79008 1vfvA 366 2.12e+01 c.37.1.9 108592 2gefA 217 2.13e+01 1oktA 211 2.17e+01 a.45.1.1,c.47.1.5 93272,93273 1dz3A 130 2.31e+01 1dz3A c.23.1.1 31105 2b4wA 315 2.32e+01 1zgkA 308 2.56e+01 1x88A 359 2.60e+01 1zoxA 113 2.61e+01 1ukcA 522 2.65e+01 c.69.1.17 107911 1o6zA 303 2.88e+01 c.2.1.5,d.162.1.1 81107,81108 1kbvA 327 2.94e+01 b.6.1.3,b.6.1.3 68395,68396 1a8y 367 3.16e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1zirA 173 3.30e+01 1vp4A 425 3.40e+01 1evlA 401 3.42e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1n4wA 504 3.42e+01 c.3.1.2,d.16.1.1 91676,91677 1pswA 348 3.50e+01 c.87.1.7 88287 2coeA 120 3.56e+01 1f6bA 198 3.64e+01 c.37.1.8 64986 1ia8A 289 3.66e+01 1ia8A d.144.1.7 62112 2f20A 240 3.86e+01 2bdrA 175 3.88e+01 2fnoA 248 3.91e+01 1m8uA 173 4.11e+01 b.11.1.1,b.11.1.1 91233,91234 1sxvA 172 4.31e+01 1e19A 314 4.38e+01 1b7bA c.73.1.1 34967 1tw6A 133 4.51e+01 1f5nA 592 4.66e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1kuuA 202 4.69e+01 d.153.2.1 73019 1sr2A 116 4.86e+01 1dl5A 317 4.93e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1z41A 338 4.93e+01 1rypI 222 5.04e+01 d.153.1.4 41877 1ww8A 439 5.19e+01 1sqsA 242 5.40e+01 c.23.5.5 98968 1e5kA 201 5.40e+01 1fr9A c.68.1.8 34578 2c1iA 431 5.51e+01 1kg0C 136 5.64e+01 d.169.1.1 72445 1wz9A 375 5.77e+01 1otkA 249 5.82e+01 a.25.1.2 93521 1uok 558 5.94e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1pjcA 361 6.09e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 2fpqA 444 6.13e+01 1kb9B 352 6.18e+01 d.185.1.1,d.185.1.1 77313,77314 1a0tP 413 6.21e+01 1a0tP f.4.3.2 43794 2aaoA 166 6.23e+01 1gzcA 239 6.25e+01 b.29.1.1 70803 1q0eA 152 6.27e+01 b.1.8.1 95504 1eo6A 117 6.30e+01 1eo6A d.15.1.3 37609 1gpmA 525 6.56e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1vkdA 338 6.69e+01 b.67.2.4 108644 2bneA 241 6.69e+01 1hu3A 260 6.85e+01 1hu3A a.118.1.14 19137 1r3sA 367 6.88e+01 c.1.22.1 96963 2aexA 346 6.96e+01 1amm 174 7.12e+01 1amm b.11.1.1,b.11.1.1 23587,23588 2a1rA 430 7.44e+01 1rypL 212 7.45e+01 d.153.1.4 41880 1vlaA 150 7.68e+01 d.227.1.2 108735 1s95A 333 7.93e+01 d.159.1.3 105375 1yovA 537 8.03e+01 1kzqA 289 8.18e+01 b.6.2.1,b.6.2.1 73374,73375 1k66A 149 8.28e+01 c.23.1.1 90941 2azwA 148 8.30e+01 4ubpC 570 8.57e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1cliA 345 8.85e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1ubkS 267 8.87e+01 e.19.1.1 88423 1t33A 224 8.90e+01 a.4.1.9,a.121.1.1 106295,106296 1okiA 210 9.00e+01 b.11.1.1,b.11.1.1 93255,93256