Best Alignments for T0346

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1clh/T0346-1clh-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1clh/T0346-1clh-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3800e-306.73e-70 2cpl b.62.1.1
1ihgA/T0346-1ihgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ihgA/T0346-1ihgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4192e-273.47e-109 2cpl a.118.8.1
b.62.1.1
1yndA/T0346-1yndA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yndA/T0346-1yndA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0303e-261.53e-113
1xo7A/T0346-1xo7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xo7A/T0346-1xo7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4762e-263.25e-114
2bitX/T0346-2bitX-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bitX/T0346-2bitX-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7303e-268.16e-114
1zcxA/T0346-1zcxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zcxA/T0346-1zcxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3450e-265.49e-111
2cfeA/T0346-2cfeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cfeA/T0346-2cfeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.2134e-261.21e-109
1vdnA/T0346-1vdnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vdnA/T0346-1vdnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4841e-255.06e-107
2a2nA/T0346-2a2nA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a2nA/T0346-2a2nA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5212e-248.91e-99
1zkcA/T0346-1zkcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zkcA/T0346-1zkcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.3643e-241.01e-97

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001