# List of top-scoring protein chains for T0346.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1awqA 164 1.10e-40 2cpl b.62.1.1 27461 1yndA 165 1.10e-40 1m9eA 164 1.31e-40 b.62.1.1 84894 2alfA 164 1.89e-40 2bitX 165 1.89e-40 1cynA 178 3.16e-40 2cpl b.62.1.1 27489 2gw2A 198 3.22e-40 1ihgA 370 6.06e-40 2cpl a.118.8.1,b.62.1.1 62380,62381 1dywA 173 1.00e-39 2cpl b.62.1.1 27505 1a58 177 1.53e-39 2cpl b.62.1.1 27495 1zmfA 165 3.54e-39 1zcxA 178 3.61e-39 1qngA 170 3.72e-39 2cpl b.62.1.1 27507 2cfeA 162 4.95e-39 1xo7A 166 5.24e-39 2eslA 190 6.59e-39 2rmcA 182 7.74e-39 2cpl b.62.1.1 27491 1qnhA 170 1.17e-38 2cpl b.62.1.1 27508 1vdnA 162 1.52e-38 1qoiA 177 2.69e-38 2cpl b.62.1.1 27490 1h0pA 182 1.53e-37 b.62.1.1 76450 1xyhA 161 8.33e-36 2a2nA 176 1.28e-35 1xwnA 174 1.35e-35 1zkcA 197 2.29e-35 1z81A 229 1.15e-33 2b71A 196 1.85e-33 2fu0A 160 2.46e-33 2c3bA 172 4.68e-33 1w74A 191 2.07e-32 2nul 164 6.83e-31 2cpl b.62.1.1 27511 1v9tA 166 1.31e-30 b.62.1.1 108451 1clh 166 1.38e-30 2cpl b.62.1.1 27512 1lopA 164 1.97e-30 2cpl b.62.1.1 27510 1wq5A 268 5.45e-01 1xc4A 268 2.98e+00 1p6qA 129 4.70e+00 c.23.1.1 104074 2as9A 210 5.53e+00 2sil 381 7.29e+00 3sil b.68.1.1 27543 1ufbA 127 7.37e+00 a.24.16.3 99331 3sil 379 7.80e+00 3sil b.68.1.1 27542 1xcfA 268 8.54e+00 1cw3A 494 1.20e+01 1bpwA c.82.1.1 35349 1o02A 500 1.20e+01 c.82.1.1 86499 1zumA 500 1.22e+01 1kfbA 268 1.32e+01 c.1.2.4 77369 1beuA 268 1.33e+01 2tysA c.1.2.4 28574 1zowA 313 1.43e+01 1tjpA 268 1.46e+01 2fug5 207 1.84e+01 1o04A 500 2.21e+01 c.82.1.1 86508 1vjvA 415 2.22e+01 d.3.1.9 108632 1wi1A 126 2.25e+01 1ag8A 499 2.35e+01 1bpwA c.82.1.1 35341 1q45A 391 2.44e+01 c.1.4.1 95780 1dgnA 89 2.46e+01 1dgnA a.77.1.3 18436 1mxiA 160 3.09e+01 c.116.1.1 79646 1y42X 392 3.14e+01 2az3A 164 3.17e+01 1uae 419 3.31e+01 1uae d.68.2.2 39574 2a9vA 212 3.41e+01 2az1A 181 3.47e+01 1kfcA 268 3.77e+01 c.1.2.4 77371 2bmbA 545 3.79e+01 1qopA 268 4.19e+01 2tysA c.1.2.4 28570 2bdrA 175 4.45e+01 1ichA 112 4.47e+01 a.77.1.2 71182 2axtB 510 4.82e+01 1tv5A 443 4.85e+01 1a2n 419 5.05e+01 1uae d.68.2.2 39575 1e9oA 152 5.49e+01 1mfmA b.1.8.1 22227 1e9qA 151 5.53e+01 1mfmA b.1.8.1 22217 1qwgA 251 5.72e+01 c.1.27.1 96473 1cb4A 151 5.97e+01 1mfmA b.1.8.1 22236 1xocA 520 6.33e+01 1whrA 124 6.36e+01 1e9pA 151 6.46e+01 1mfmA b.1.8.1 22215 1df9A 191 6.53e+01 1befA b.47.1.3 26420 1n7dA 699 6.60e+01 b.68.5.1,g.3.11.1,g.3.11.1,g.3.11.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1 80236,80237,80238,80239,80240,80241,80242,80243,80244,80245 2b61A 377 7.08e+01 1e9oB 152 7.11e+01 1mfmA b.1.8.1 22228 1e9qB 151 7.17e+01 1mfmA b.1.8.1 22218 2a5iA 306 7.21e+01 2a5kA 307 7.23e+01 1q2wA 308 7.32e+01 b.47.1.4 88355 2amdA 311 7.39e+01 1tcwA 99 7.39e+01 1fmb b.50.1.1 26760 2masA 314 7.61e+01 2masA c.70.1.1 34810 2bvfA 459 7.76e+01 1z1jA 306 7.92e+01 3sodB 152 8.04e+01 1i4vA 115 8.04e+01 1umuA b.87.1.1 61734 1e9pB 151 8.05e+01 1mfmA b.1.8.1 22216 1w7jB 151 8.09e+01 2gm6A 208 8.20e+01 1q0eA 152 8.20e+01 b.1.8.1 95504 1cbjA 151 8.25e+01 1mfmA b.1.8.1 22213 1kt2B 213 8.42e+01 b.1.1.2,d.19.1.1 72953,72954 1qg6A 261 8.52e+01 1eny c.2.1.2 29919 1c14A 262 8.56e+01 1eny c.2.1.2 29927 1qsgA 265 8.68e+01 1eny c.2.1.2 29935 1yudA 170 8.79e+01 2b4wA 315 8.82e+01 1f6dA 376 8.88e+01 1f6dA c.87.1.3 35467 1x63A 82 8.90e+01 1ldr 43 8.92e+01 1ajj g.12.1.1 44616 1vgvA 384 8.99e+01 c.87.1.3 100608