# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bitX 165 3.21e-34 1dywA 173 4.79e-34 2cpl b.62.1.1 27505 1yndA 165 5.36e-34 1awqA 164 5.56e-34 2cpl b.62.1.1 27461 2cpl 165 5.94e-34 2cpl b.62.1.1 27420 1awsA 164 8.39e-34 2cpl b.62.1.1 27431 1a58 177 9.42e-34 2cpl b.62.1.1 27495 1ihgA 370 1.95e-33 2cpl a.118.8.1,b.62.1.1 62380,62381 1zcxA 178 3.63e-33 2cfeA 162 3.71e-33 1xo7A 166 5.74e-33 2rmcA 182 9.28e-33 2cpl b.62.1.1 27491 1vdnA 162 1.47e-32 1qoiA 177 3.59e-32 2cpl b.62.1.1 27490 1h0pA 182 8.58e-32 b.62.1.1 76450 2a2nA 176 3.21e-30 1zkcA 197 8.21e-30 1xwnA 174 3.50e-29 2fu0A 160 7.16e-29 2b71A 196 1.39e-28 1v9tA 166 5.75e-26 b.62.1.1 108451 1lopA 164 2.33e-25 2cpl b.62.1.1 27510 1j2aA 166 4.23e-23 b.62.1.1 90779 1wu7A 434 7.34e-01 1mxiA 160 1.54e+00 c.116.1.1 79646 1gggA 226 2.07e+00 1lst c.94.1.1 35817 1vr0A 247 2.12e+00 1qwgA 251 2.40e+00 c.1.27.1 96473 1xhnA 184 2.54e+00 1wggA 96 5.50e+00 1y7mA 164 6.18e+00 1fxoA 293 7.78e+00 1g0rA c.68.1.6 34524 1zx8A 136 8.57e+00 1do6A 124 8.84e+00 1do6A b.1.13.1 22361 1mp4A 292 9.00e+00 c.68.1.6 79376 1nbfA 353 9.20e+00 d.3.1.9 80387 1dqiA 124 9.26e+00 1do6A b.1.13.1 22357 2cy7A 396 9.61e+00 1h5rA 293 1.03e+01 c.68.1.6 65623 2gclA 261 1.06e+01 1qmpA 130 1.27e+01 1dz3A c.23.1.1 31106 1wdnA 226 1.28e+01 1lst c.94.1.1 35816 1us5A 314 1.52e+01 c.94.1.1 99856 1erjA 393 1.54e+01 1erjA b.69.4.1 27660 1qcsA 211 1.54e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1dz3A 130 1.55e+01 1dz3A c.23.1.1 31105 1h4xA 117 1.66e+01 1auz c.13.2.1 60626 1g7fA 298 1.76e+01 1pty c.45.1.2 60330 1e30A 155 1.84e+01 1rcy b.6.1.1 23016 1vfjA 116 1.86e+01 1vl6A 388 1.95e+01 c.2.1.7,c.58.1.3 108724,108725 1f0iA 504 1.98e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 2calA 154 1.98e+01 1oqyA 368 2.03e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1v0wA 506 2.05e+01 d.136.1.2,d.136.1.2 108220,108221 2b8mA 117 2.09e+01 1zoyA 622 2.11e+01 1pa1A 310 2.12e+01 c.45.1.2 94404 1cf2O 337 2.16e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 2f71A 298 2.20e+01 1mveA 243 2.25e+01 b.29.1.2 85140 1vqvA 306 2.30e+01 1nb8A 353 2.33e+01 d.3.1.9 80385 1wriA 93 2.34e+01 1a70 97 2.39e+01 1awd d.15.4.1 37678 1ve4A 206 2.46e+01 1zk5A 176 2.61e+01 2coeA 120 2.63e+01 1q0eA 152 2.72e+01 b.1.8.1 95504 1oxsC 353 2.72e+01 b.40.6.3,c.37.1.12 87519,87520 1lq9A 112 2.74e+01 d.58.4.3 78129 2bh9A 489 2.76e+01 1oxxK 353 2.86e+01 b.40.6.3,c.37.1.12 93715,93716 1lylA 504 2.89e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 2azpA 318 2.96e+01 1ptvA 321 3.21e+01 1pty c.45.1.2 32665 1to4A 156 3.23e+01 b.1.8.1 107162 1vi6A 208 3.24e+01 c.23.15.1 100736 1b77A 228 3.28e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1ntyA 311 3.37e+01 a.87.1.1,b.55.1.1 103873,103874 1rx0A 393 3.46e+01 a.29.3.1,e.6.1.1 98007,98008 2a9fA 398 3.46e+01 1m3iA 471 3.48e+01 f.9.1.1 91178 1q1oA 98 3.56e+01 d.15.2.2 95596 1lzlA 323 3.61e+01 c.69.1.2 78306 1uliB 187 3.65e+01 d.17.4.4 107923 1b1cA 181 3.70e+01 1amoA c.23.5.2 31212 1wi1A 126 3.70e+01 2b7yA 182 3.89e+01 1e9pA 151 3.90e+01 1mfmA b.1.8.1 22215 1g291 372 4.13e+01 1g291 1crzA 403 4.13e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1v3rA 116 4.15e+01 1o7iA 119 4.18e+01 b.40.4.3 86642 1wnfA 328 4.21e+01 1u69A 163 4.29e+01 d.32.1.7 107699 1usuB 170 4.35e+01 d.83.2.1 99886 1lqtA 456 4.37e+01 c.3.1.1,c.4.1.1 74198,74199 1vjvA 415 4.43e+01 d.3.1.9 108632 1rcy 151 4.44e+01 1rcy b.6.1.1 23018 1bl3A 160 4.47e+01 1b9dA c.55.3.2 33655 1foeA 377 4.49e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1zoxA 113 4.57e+01 1khbA 625 4.64e+01 c.91.1.1,c.109.1.1 68606,68607 1sr4B 261 4.83e+01 d.151.1.1 105949 1ejfA 125 4.86e+01 1ejfA b.15.1.2 23683 1qx4A 274 4.86e+01 b.43.4.2,c.25.1.1 104624,104625 1j58A 385 5.15e+01 b.82.1.2 71531 1c4rA 182 5.16e+01 1c4rA b.29.1.4 24229 1evlA 401 5.23e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1cbjA 151 5.24e+01 1mfmA b.1.8.1 22213 1s8nA 205 5.24e+01 c.23.1.1 105374 1fs0E 138 5.38e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1tllA 688 5.47e+01 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 2a46A 238 5.53e+01 1rypI 222 5.57e+01 d.153.1.4 41877 1lam 484 5.58e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1wlsA 328 5.63e+01 1umkA 275 5.71e+01 1k68A 140 5.91e+01 c.23.1.1 90943 1k87A 669 5.94e+01 a.176.1.1,c.1.23.2 77286,77287 1o9wA 177 6.03e+01 b.2.3.5 86713 1fjgC 239 6.11e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 2givA 295 6.19e+01 1mdbA 539 6.19e+01 e.23.1.1 79008 1zhmA 238 6.32e+01 1f20A 435 6.34e+01 b.43.4.1,c.25.1.4 64932,64933 2cb2A 318 6.40e+01 1r4wA 226 6.44e+01 c.47.1.13 97050 2cy5A 140 6.63e+01 1df7A 159 6.82e+01 3dfr c.71.1.1 34885 1a04A 215 6.85e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1exqA 154 6.87e+01 1b9dA c.55.3.2 33646 1zoiA 276 6.88e+01 1xiwA 105 6.90e+01 1sq2N 113 6.97e+01 b.1.1.1 105881 1o5oA 221 6.98e+01 c.61.1.1 92509 1rifA 282 7.01e+01 c.37.1.23 97507 2crvA 120 7.08e+01 1ndh 272 7.10e+01 1ndh b.43.4.2,c.25.1.1 25662,31552 1r62A 160 7.10e+01 d.122.1.3 104816 1c0eA 157 7.23e+01 1dg9A c.44.1.1 32638 2g5dA 422 7.30e+01 1vf7A 369 7.32e+01 f.46.1.1 108557 1wloA 136 7.49e+01 1z7mA 344 7.50e+01 1itg 166 7.65e+01 1b9dA c.55.3.2 33661 1vqoD 177 7.70e+01 1fonA 240 7.78e+01 5ptp b.47.1.2 26231 1k66A 149 7.79e+01 c.23.1.1 90941 2ar9A 278 7.82e+01 1ja1A 622 7.91e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1zq4A 693 7.91e+01 1tmy 120 7.92e+01 1dbwA c.23.1.1 31083 1a8s 273 7.95e+01 1brt c.69.1.12 34710 2as9A 210 8.04e+01 1d7yA 408 8.36e+01 1d7yA c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1f39A 101 8.38e+01 1umuA b.87.1.1 28386 1sznA 417 8.52e+01 b.71.1.1,c.1.8.1 106162,106163 1h7sA 365 8.53e+01 d.14.1.3,d.122.1.2 65705,65706 1wgkA 114 8.63e+01 1hyvA 166 8.77e+01 1b9dA c.55.3.2 61424 1u0sY 118 8.92e+01 c.23.1.1 107566 1e1oA 504 8.97e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1qe3A 489 8.98e+01 2bce c.69.1.1 34630 1ezwA 349 8.98e+01 1ezwA c.1.16.3 29558