# List of top-scoring protein chains for t04-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yndA 165 1.76e-12 2bitX 165 2.03e-12 1a58 177 2.92e-12 2cpl b.62.1.1 27495 1awqA 164 3.38e-12 2cpl b.62.1.1 27461 2cpl 165 3.83e-12 2cpl b.62.1.1 27420 1dywA 173 4.30e-12 2cpl b.62.1.1 27505 1ihgA 370 4.87e-12 2cpl a.118.8.1,b.62.1.1 62380,62381 1awsA 164 5.29e-12 2cpl b.62.1.1 27431 1qoiA 177 5.48e-12 2cpl b.62.1.1 27490 1xo7A 166 5.55e-12 2cfeA 162 6.56e-12 2rmcA 182 8.35e-12 2cpl b.62.1.1 27491 1vdnA 162 9.02e-12 1zcxA 178 1.21e-11 1h0pA 182 1.84e-11 b.62.1.1 76450 1zkcA 197 5.03e-11 2a2nA 176 8.76e-11 2fu0A 160 1.30e-10 2b71A 196 1.90e-10 1xwnA 174 3.55e-10 1j2aA 166 5.87e-10 b.62.1.1 90779 1v9tA 166 7.36e-10 b.62.1.1 108451 1lopA 164 8.57e-10 2cpl b.62.1.1 27510 1bd0A 388 3.99e+00 1bd0A b.49.2.2,c.1.6.1 26480,28642 1pg4A 652 4.05e+00 e.23.1.1 88067 1vr0A 247 6.22e+00 2c3mA 1231 6.65e+00 1p1xA 260 7.00e+00 c.1.10.1 104060 1ush 550 7.04e+00 1ush d.114.1.1,d.159.1.2 40923,42079 1wpgA 994 7.16e+00 1w6sA 599 7.74e+00 1m3iA 471 9.05e+00 f.9.1.1 91178 1w0pA 781 9.72e+00 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1vj0A 380 1.08e+01 b.35.1.2,c.2.1.1 100786,100787 1mxiA 160 1.11e+01 c.116.1.1 79646 1qf6A 642 1.18e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 2as9A 210 1.21e+01 1ntyA 311 1.23e+01 a.87.1.1,b.55.1.1 103873,103874 1zx8A 136 1.33e+01 1uok 558 1.38e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1e8yA 966 1.39e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1jndA 420 1.41e+01 c.1.8.5,d.26.3.1 71757,71758 1hp1A 516 1.47e+01 d.114.1.1,d.159.1.2 70976,70977 1xwl 580 1.50e+01 1xwl c.55.3.5,e.8.1.1 33708,43001 1riqA 465 1.64e+01 a.203.1.1,d.104.1.1 97516,97517 1pfo 500 1.66e+01 1pfo f.9.1.1 43826 1kssA 571 1.80e+01 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1gnxA 479 1.83e+01 c.1.8.4 76241 2bcgG 453 1.92e+01 1k07A 263 1.93e+01 d.157.1.1 77218 1jdw 423 2.01e+01 1jdw d.126.1.2 41129 1xdpA 687 2.03e+01 1e6yA 569 2.04e+01 1mroA a.89.1.1,d.58.31.2 18529,39447 1erjA 393 2.05e+01 1erjA b.69.4.1 27660 1ogpA 393 2.06e+01 b.1.18.6,d.176.1.1 92927,92928 1i50A 1733 2.09e+01 e.29.1.2 61754 1q2wA 308 2.09e+01 b.47.1.4 88355 1jb7A 495 2.10e+01 1otcA b.40.4.3,b.40.4.3,b.40.4.3 62836,62837,62838 1bjt 793 2.11e+01 1bjt e.11.1.1 43249 1elvA 333 2.19e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1ukvG 453 2.23e+01 c.3.1.3,c.3.1.3,d.16.1.6 107915,107916,107917 1su4A 994 2.31e+01 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 98993,98994,98995,98996 1qqcA 773 2.32e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1e39A 571 2.33e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1h4pA 408 2.38e+01 c.1.8.3 90617 1b77A 228 2.46e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1q0qA 406 2.50e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1b8fA 509 2.55e+01 1b8fA a.127.1.2 19434 2b30A 301 2.69e+01 1pguA 615 2.70e+01 b.69.4.1,b.69.4.1 88069,88070 1l5aA 436 2.73e+01 c.43.1.2,c.43.1.2 75923,75924 1gggA 226 2.78e+01 1lst c.94.1.1 35817 2jdxA 385 2.78e+01 1jdw d.126.1.2 41139 1e5eA 404 2.80e+01 1ibjA c.67.1.3 59265 1rlr 761 2.89e+01 1rlr a.98.1.1,c.7.1.2 18753,30679 2ahuA 531 2.95e+01 1yfqA 342 3.09e+01 2chnA 716 3.20e+01 1pj5A 830 3.30e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2a46A 238 3.32e+01 1rqbA 539 3.33e+01 a.5.7.2,c.1.10.5 105057,105058 1wxrA 1048 3.37e+01 1d5tA 433 3.42e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 1vg0A 650 3.50e+01 c.3.1.3,d.16.1.6 108596,108597 1ewkA 490 3.55e+01 1ewkA c.93.1.1 35712 1qv9A 283 3.67e+01 c.127.1.1 96356 1j58A 385 3.75e+01 b.82.1.2 71531 1lf7A 182 3.75e+01 b.60.1.1 73878 1txvA 452 3.80e+01 1h8lA 380 3.85e+01 b.3.2.1,c.56.5.1 65737,65738 1r0mA 375 3.91e+01 c.1.11.2,d.54.1.1 104747,104748 1xfdA 723 3.92e+01 1jclA 260 4.03e+01 c.1.10.1 66501 1go7P 462 4.03e+01 b.80.7.1,d.92.1.6 76245,76246 2gk3A 256 4.16e+01 1k7iA 479 4.48e+01 b.80.7.1,d.92.1.6 77281,77282 1g72A 573 4.48e+01 4aahA b.70.1.1 27680 1r64A 481 4.49e+01 b.18.1.20,c.41.1.1 97140,97141 1xdwA 331 4.51e+01 2bx2L 517 4.62e+01 1y4jA 284 4.65e+01 1xknA 355 4.68e+01 1bf2 750 4.68e+01 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1iqrA 420 4.94e+01 a.99.1.1,c.28.1.1 66275,66276 1dqiA 124 4.96e+01 1do6A b.1.13.1 22357 2cunA 410 4.96e+01 1ks8A 433 4.99e+01 a.102.1.2 77519 1i1iP 681 5.02e+01 1i1iP d.92.1.5 40297 2c0hA 353 5.14e+01 2mprA 421 5.15e+01 2mprA f.4.3.2 43788 1qlaA 656 5.25e+01 1qlaA a.7.3.1,c.3.1.4,d.168.1.1 16328,30427,42310 1goiA 499 5.27e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1iqaA 160 5.28e+01 b.22.1.1 71274 1hq0A 295 5.29e+01 1hzgA d.194.1.1 61122 1wvgA 359 5.46e+01 1zoxA 113 5.55e+01 1hkkA 364 5.60e+01 c.1.8.5,d.26.3.1 90634,90635 1gycA 499 5.67e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1wu7A 434 5.69e+01 1vl1A 232 5.70e+01 c.124.1.1 108707 1ktaA 365 5.71e+01 e.17.1.1 77533 1juvA 193 5.76e+01 c.71.1.1 90912 2bvfA 459 5.77e+01 1u8vA 490 5.80e+01 1s95A 333 5.80e+01 d.159.1.3 105375 1qx4A 274 5.81e+01 b.43.4.2,c.25.1.1 104624,104625 1rsgA 516 5.84e+01 1udxA 416 5.86e+01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1rx0A 393 5.87e+01 a.29.3.1,e.6.1.1 98007,98008 1qniA 581 5.97e+01 1qniA b.6.1.4,b.69.3.1 23042,27642 1wl4A 397 6.00e+01 1a9xB 379 6.02e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1kit 757 6.02e+01 1kit b.29.1.8,b.29.1.8,b.68.1.1 24272,24273,27616 2bmaA 470 6.04e+01 1cf2O 337 6.05e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1ogoX 574 6.13e+01 b.133.1.1,b.80.1.10 92925,92926 1tf4A 605 6.32e+01 1tf4A a.102.1.2,b.2.2.2 18827,22393 1gj7B 253 6.35e+01 1zk7A 467 6.38e+01 1gc0A 398 6.54e+01 c.67.1.3 70168 1n9eA 787 6.55e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 4dpvZ 584 6.75e+01 2cas b.121.5.2 23377 1wdnA 226 6.90e+01 1lst c.94.1.1 35816 1vqvA 306 6.94e+01 1do6A 124 6.97e+01 1do6A b.1.13.1 22361 1aszB 490 7.04e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1cqxA 403 7.11e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 2aaa 484 7.12e+01 7taa b.71.1.1,c.1.8.1 27777,28764 1j08A 226 7.13e+01 c.47.1.2,c.47.1.2 83855,83856 1e5kA 201 7.17e+01 1fr9A c.68.1.8 34578 1hyuA 521 7.22e+01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1qvbA 481 7.34e+01 1qvbA c.1.8.4 28983 1zoyA 622 7.43e+01 1p9bA 442 7.45e+01 c.37.1.10 94385 1pjxA 314 7.46e+01 b.68.6.1 104167 1rvkA 382 7.52e+01 c.1.11.2,d.54.1.1 97928,97929 1j4aA 333 7.61e+01 c.2.1.4,c.23.12.1 71502,71503 1ecpA 238 7.63e+01 1ecpA c.56.2.1 33775 1z0nA 96 7.74e+01 2b49A 287 7.80e+01 1pswA 348 7.84e+01 c.87.1.7 88287 2fjbA 643 7.84e+01 1fecA 490 7.84e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1d2eA 397 7.85e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2bcjB 340 7.90e+01 1ta8A 332 8.11e+01 1z15A 344 8.16e+01 1tf5A 844 8.18e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1fs5A 266 8.22e+01 c.124.1.1 65044 2ew0A 192 8.25e+01 1v7pC 200 8.27e+01 c.62.1.1 108408 1u9iA 519 8.37e+01 1zx1A 231 8.44e+01 1zoiA 276 8.45e+01 1g8fA 511 8.57e+01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1kdgA 546 8.61e+01 c.3.1.2,d.16.1.1 77337,77338 1ceo 343 8.61e+01 1ceo c.1.8.3 28808 1xhnA 184 8.63e+01 1w6gA 646 8.70e+01 1de4C 640 8.78e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1ixh 321 8.81e+01 1ixh c.94.1.1 35761 1vlbA 907 8.81e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1vr5A 547 8.82e+01