Best Alignments for T0345

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2f8aA/T0345-2f8aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f8aA/T0345-2f8aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1880e-311.59e-119
1gp1A/T0345-1gp1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gp1A/T0345-1gp1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0478e-225.29e-119 1gp1A c.47.1.10
1xzoA/T0345-1xzoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xzoA/T0345-1xzoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.4940e-145.06e-60
2f9sA/T0345-2f9sA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f9sA/T0345-2f9sA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9519e-121.11e-58
2cvbA/T0345-2cvbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cvbA/T0345-2cvbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6004e-093.78e-41
1xvwA/T0345-1xvwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xvwA/T0345-1xvwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.5187e-082.17e-41
2b7kA/T0345-2b7kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b7kA/T0345-2b7kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0837e-078.72e-45
1z5yE/T0345-1z5yE-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z5yE/T0345-1z5yE-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2331e-072.57e-41
1zzoA/T0345-1zzoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zzoA/T0345-1zzoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.4421e-071.44e-41
2fy6A/T0345-2fy6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fy6A/T0345-2fy6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.8016e-071.86e-38

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001