# List of top-scoring protein chains for T0345.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f8aA 208 1.04e-31 1gp1A 198 1.28e-31 1gp1A c.47.1.10 33059 2gs3A 185 8.47e-30 1st9A 143 1.39e-13 c.47.1.10 98987 2f9sA 151 1.48e-13 1jfuA 186 3.44e-12 c.47.1.10 62940 1kngA 156 9.69e-08 c.47.1.10 72777 1z5yE 149 2.50e-07 1xzoA 174 7.27e-07 1on4A 174 7.29e-07 c.47.1.10 93355 2fy6A 143 3.13e-05 1o73A 144 5.93e-05 c.47.1.10 86638 2cvbA 188 8.25e-05 1thx 115 1.34e-04 1thx c.47.1.1 32732 1xwaA 111 1.45e-04 1xwbA 106 1.52e-04 1wmjA 130 1.60e-04 1fg4A 149 1.64e-04 1ewxA c.47.1.10 59814 1o6jA 150 1.64e-04 c.47.1.10 81089 1o81A 152 1.66e-04 c.47.1.10 81175 1oc9A 152 1.75e-04 c.47.1.10 86797 1t00A 112 3.17e-04 1lu4A 136 3.43e-04 c.47.1.10 91124 1ezkA 153 3.52e-04 1ewxA c.47.1.10 33063 1qk8A 146 3.56e-04 1ewxA c.47.1.10 33061 1okdA 154 3.56e-04 c.47.1.10 93249 1ewxA 146 3.58e-04 1ewxA c.47.1.10 33062 3trx 105 4.29e-04 1erv c.47.1.1 32757 1zzoA 136 7.08e-04 1ert 105 8.21e-04 1erv c.47.1.1 32744 1xxuA 153 8.37e-04 1xvwA 160 8.40e-04 2b5xA 148 8.78e-04 1aiu 105 8.88e-04 1erv c.47.1.1 32746 1i5gA 144 9.16e-04 1ewxA c.47.1.10 61784 1erv 105 1.11e-03 1erv c.47.1.1 32743 1trs 105 1.30e-03 1erv c.47.1.1 32753 1o8xA 146 1.85e-03 c.47.1.10 86681 1wp0A 165 1.93e-03 2gqkA 173 1.97e-03 2ggtA 164 2.03e-03 1srx 108 3.23e-03 1thx c.47.1.1 32729 2trxA 108 4.07e-03 1thx c.47.1.1 32719 2f51A 118 4.09e-03 1zzyA 108 4.23e-03 2fchA 108 4.35e-03 2cvkA 110 4.50e-03 2tir 108 4.81e-03 1thx c.47.1.1 32721 1quwA 105 6.15e-03 1thx c.47.1.1 32735 1nw2A 105 6.25e-03 c.47.1.1 92215 1ep7A 112 6.53e-03 c.47.1.1 64905 1cqgA 105 6.91e-03 1erv c.47.1.1 32756 1nswA 105 8.20e-03 c.47.1.1 92097 1rqmA 105 8.30e-03 c.47.1.1 105068 1kebA 108 8.49e-03 c.47.1.1 77341 2fd3A 108 9.39e-03 1ep8A 112 9.58e-03 c.47.1.1 64907 1qmvA 197 1.18e-02 1qq2A c.47.1.10 33066 1m7tA 107 1.38e-02 c.47.1.1 78745 1we0A 187 1.59e-02 1dbyA 107 1.59e-02 1thx c.47.1.1 32734 1ti3A 113 1.60e-02 1gl8A 104 1.64e-02 c.47.1.1 65290 1fb6A 105 1.65e-02 1thx c.47.1.1 32739 1f6mC 108 2.45e-02 1thx c.47.1.1 32725 1f9mA 112 2.77e-02 1erv c.47.1.1 32736 1faaA 124 2.88e-02 1erv c.47.1.1 32738 1r26A 125 4.00e-02 c.47.1.1 96847 1x5cA 121 4.48e-02 1txxA 108 4.78e-02 1thx c.47.1.1 32724 1e2yA 188 5.04e-02 1qq2A c.47.1.10 59173 1xflA 124 5.26e-02 c.47.1.1 109586 1v98A 140 6.40e-02 1w4vA 119 6.54e-02 1erw 105 1.18e-01 1erv c.47.1.1 32745 2djjA 121 1.34e-01 1qq2A 199 1.43e-01 1qq2A c.47.1.10 33064 1zyeA 220 1.56e-01 1zcpA 108 1.70e-01 2a4vA 159 1.92e-01 1syrA 112 2.00e-01 c.47.1.1 99028 2cx4A 164 2.10e-01 1tho 109 2.39e-01 1thx c.47.1.1 32722 1mek 120 2.78e-01 1erv c.47.1.2 32775 2ggkA 304 3.45e-01 2gglA 304 3.45e-01 1fo6A 304 3.45e-01 1erzA d.160.1.2 59923 2b5eA 504 5.21e-01 1uf5A 303 5.38e-01 d.160.1.2 107808 1zofA 198 5.43e-01 2h01A 192 5.47e-01 1erzA 303 5.50e-01 1erzA d.160.1.2 59498 1oazA 123 5.88e-01 c.47.1.1 92741 1x5dA 133 6.19e-01 1uc7A 125 6.25e-01 c.47.1.1 99163 2fwhA 134 6.47e-01 2bmxA 195 8.83e-01 2d9hA 78 9.70e-01 2b7kA 200 1.03e+00 1x6hA 86 1.31e+00 2cokA 113 1.54e+00 1uulA 202 1.69e+00 1eejA 216 2.81e+00 1eejA c.47.1.9,d.17.3.1 33057,38071 1zhhB 242 3.90e+00 1f1uA 323 4.19e+00 d.32.1.3,d.32.1.3 83200,83201 2c21A 144 4.28e+00 1vrsD 134 4.89e+00 1ng9A 800 5.60e+00 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 80480,80481,80482,80483 1wb9A 800 5.60e+00 1wbdA 800 5.60e+00 1wbbA 800 5.60e+00 1e3mA 800 5.60e+00 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1fcqA 350 5.68e+00 c.1.8.9 65006 1psqA 163 5.73e+00 c.47.1.10 88283 1q35A 320 6.29e+00 c.94.1.1 95661 2chlA 351 7.72e+00 1ufoA 238 7.74e+00 c.69.1.27 99344 1dvh 79 8.01e+00 1c53 a.3.1.1 15802 1e08E 78 8.10e+00 i.4.1.1 45916 1x0rA 249 8.51e+00 2cv4A 250 8.54e+00 1hh1A 143 8.58e+00 1gefA c.52.1.18 61036 2dvh 79 9.79e+00 1c53 a.3.1.1 15803 1pk1A 89 9.80e+00 1y25A 165 1.02e+01 1e5tA 710 1.11e+01 1qfmA b.69.7.1,c.69.1.4 27676,34644 1o6gA 710 1.15e+01 b.69.7.1,c.69.1.4 81087,81088 1o6fA 710 1.18e+01 b.69.7.1,c.69.1.4 81085,81086 1e8nA 710 1.19e+01 1qfmA b.69.7.1,c.69.1.4 27675,34643 1h2wA 710 1.19e+01 b.69.7.1,c.69.1.4 76596,76597 1h2xA 710 1.20e+01 b.69.7.1,c.69.1.4 76598,76599 1vz3A 710 1.20e+01 b.69.7.1,c.69.1.4 108947,108948 1j08A 226 1.30e+01 c.47.1.2,c.47.1.2 83855,83856 1qzzA 374 1.30e+01 a.4.5.29,c.66.1.12 96719,96720 1qf9A 194 1.30e+01 1zin c.37.1.1 31848 1xvqA 175 1.33e+01 2fgxA 107 1.37e+01 1yf0A 186 1.39e+01 1lpbB 449 1.52e+01 1gpl b.12.1.2,c.69.1.19 23643,34791 2cb3A 175 1.53e+01 1emuA 132 1.55e+01 1agrE a.91.1.1 18549 1c53 79 1.58e+01 1c53 a.3.1.1 15801 1yf1A 186 1.59e+01 1wdrA 495 1.60e+01 1jbaA 204 1.60e+01 1rec a.39.1.5 17330 1ac1A 189 1.60e+01 1fvkA c.47.1.13 90326 1fvjA 189 1.63e+01 1fvkA c.47.1.13 90349 1dk8A 147 1.63e+01 1agrE a.91.1.1 18548 1x5eA 126 1.82e+01 1yexA 186 1.82e+01 1xccA 220 1.87e+01 1yepA 186 1.89e+01 1ugsA 203 1.90e+01 d.149.1.1 107837 1y8cA 246 2.14e+01 1vlmA 219 2.14e+01 c.66.1.41 108836 1gjiA 275 2.30e+01 b.1.18.1,b.2.5.3 70187,70188 2ewoA 377 2.36e+01 1wdsA 495 2.37e+01 1xi7A 61 2.60e+01 2c47A 313 2.60e+01 2fhzA 109 2.77e+01 1jzoA 216 2.88e+01 c.47.1.9,d.17.3.1 84267,84268 1jzdA 220 2.90e+01 c.47.1.9,d.17.3.1 84257,84258 1wlsA 328 2.95e+01 1vz2A 710 2.97e+01 b.69.7.1,c.69.1.4 108945,108946 1a8l 226 2.97e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1zq1A 438 3.02e+01 2bz6H 254 3.07e+01 1ugrA 203 3.12e+01 d.149.1.1 107835 1senA 164 3.26e+01 c.47.1.1 105465 1svcP 365 3.30e+01 1a3qA b.1.18.1,b.2.5.3 21924,22443 1zu4A 320 3.38e+01 1rz3A 201 3.59e+01 c.37.1.6 98132 1z3sA 217 3.68e+01 2gy7A 216 3.73e+01 1nt4A 391 3.86e+01 c.60.1.2 92102 1fvkA 189 3.93e+01 1fvkA c.47.1.13 90351 1bq7A 189 3.94e+01 1fvkA c.47.1.13 90331 1u0kA 288 3.99e+01 d.21.1.2,d.21.1.2 107547,107548 1wdcA 64 4.15e+01 1wdcA 1s1iU 126 4.28e+01 i.1.1.1 105195 1ugpA 203 4.31e+01 d.149.1.1 107831 1ireA 204 4.32e+01 d.149.1.1 76769 1bvoA 175 4.49e+01 1a3qA b.2.5.3 22457 1pmhX 185 4.51e+01 b.18.1.18 104193 1q6eA 495 4.75e+01 c.1.8.1 95972 1cvsC 225 4.80e+01 1cvsC b.1.1.4,b.1.1.4 21726,21727 1z7pA 117 4.81e+01 1scmA 60 4.82e+01 1wdcA 1evtC 225 4.85e+01 1cvsC b.1.1.4,b.1.1.4 21730,21731 1ukz 203 4.95e+01 1zin c.37.1.1 31840 1q6dA 495 5.01e+01 c.1.8.1 95971 1v3hA 495 5.05e+01 c.1.8.1 108303 1wdpA 495 5.06e+01 1nw3A 416 5.14e+01 c.66.1.31 86288 1ionA 243 5.16e+01 c.37.1.10 62633 1btc 491 5.35e+01 1byb c.1.8.1 28791 1jfrA 262 5.42e+01 1jfrA c.69.1.16 34724 1vig 71 5.56e+01 1vih d.51.1.1 38806 1m0uA 249 5.56e+01 a.45.1.1,c.47.1.5 78359,78360 1acvA 189 5.57e+01 1fvkA c.47.1.13 90328 1t5bA 201 5.58e+01 c.23.5.3 106433 1vjnA 220 5.59e+01 d.157.1.4 100825 1wdqA 495 5.66e+01 2plc 274 5.70e+01 2plc c.1.18.2 29614 1gm6A 175 5.79e+01 b.60.1.1 70272 1cozA 129 5.84e+01 1cozA c.26.1.2 31598 1jy2P 48 5.91e+01 h.1.8.1 67442 1wrbA 253 5.94e+01 1aod 289 5.97e+01 2plc c.1.18.2 29615 1byb 495 5.97e+01 1byb c.1.8.1 28790 1qxhA 167 5.97e+01 c.47.1.10 96528 1p9rA 418 6.03e+01 c.37.1.11 94399 1h4lD 147 6.06e+01 a.74.1.1 70873 1k1dA 460 6.32e+01 b.92.1.3,c.1.9.6 71979,71980 2his 312 6.59e+01 1taxA c.1.8.3 28918 2f2lX 167 6.79e+01 2fqxA 318 6.86e+01 2bjfA 329 6.88e+01 1vkxB 312 6.90e+01 1a3qA b.1.18.1,b.2.5.3 21931,22446 1leiB 313 6.91e+01 b.1.18.1,b.2.5.3 84601,84602 1kw4A 89 7.02e+01 a.60.1.2 73077 1nfkA 325 7.15e+01 1a3qA b.1.18.1,b.2.5.3 21929,22444 1ooaA 326 7.15e+01 b.1.18.1,b.2.5.3 87192,87193 2bddA 182 7.41e+01 1bxwA 172 7.42e+01 1bxwA f.4.1.1 43743 1qjpA 171 7.42e+01 1bxwA f.4.1.1 43742 1v4bA 200 7.43e+01 1tikA 213 7.52e+01 c.23.5.3 107003 1aba 87 7.83e+01 1aba c.47.1.1 32760 1k4yA 534 7.94e+01 c.69.1.1 72069 5hpgA 84 8.24e+01 5hpgA g.14.1.1 44642 2czrA 226 8.32e+01 1ro5A 201 8.35e+01 d.108.1.3 105023 1k1gA 131 8.54e+01 d.51.1.1 68015 1v3iA 495 8.60e+01 c.1.8.1 108304 1ujdA 117 8.64e+01 b.36.1.1 99454 1vkdA 338 8.67e+01 b.67.2.4 108644 2aw4P 114 8.73e+01 1unlD 208 8.76e+01