# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f8aA 208 3.46e-34 1xzoA 174 5.88e-14 1st9A 143 1.54e-12 c.47.1.10 98987 2f9sA 151 4.93e-12 1jfuA 186 3.45e-10 c.47.1.10 62940 2cvbA 188 3.84e-08 1kngA 156 1.05e-07 c.47.1.10 72777 1z5yE 149 3.53e-07 1xvwA 160 1.21e-05 1lu4A 136 1.37e-05 c.47.1.10 91124 2b7kA 200 1.45e-05 1o8xA 146 2.99e-05 c.47.1.10 86681 1i5gA 144 8.60e-05 1ewxA c.47.1.10 61784 2fy6A 143 8.64e-05 1zzoA 136 2.72e-04 1t00A 112 5.01e-04 1qmvA 197 7.81e-04 1qq2A c.47.1.10 33066 1erv 105 3.65e-03 1erv c.47.1.1 32743 1thx 115 6.06e-03 1thx c.47.1.1 32732 2trxA 108 8.42e-03 1thx c.47.1.1 32719 2a4vA 159 1.13e-02 1r26A 125 2.11e-02 c.47.1.1 96847 1uf5A 303 2.48e-02 d.160.1.2 107808 1w4vA 119 4.45e-02 1erw 105 6.52e-02 1erv c.47.1.1 32745 2f51A 118 7.94e-02 1faaA 124 1.01e-01 1erv c.47.1.1 32738 1bvoA 175 1.67e-01 1a3qA b.2.5.3 22457 1v98A 140 1.71e-01 1xccA 220 2.01e-01 1xvqA 175 2.21e-01 1h2wA 710 4.21e-01 b.69.7.1,c.69.1.4 76596,76597 1nswA 105 4.44e-01 c.47.1.1 92097 1ogiA 303 6.21e-01 b.43.4.2,c.25.1.1 92914,92915 1z7gA 217 8.06e-01 1z3eA 132 9.45e-01 1eejA 216 1.75e+00 1eejA c.47.1.9,d.17.3.1 33057,38071 1vhxA 150 1.81e+00 c.55.3.8 100712 1sxrA 183 1.94e+00 d.118.1.1 106101 1ufoA 238 2.20e+00 c.69.1.27 99344 8rucI 123 2.30e+00 1rboC d.73.1.1 39629 1gqnA 252 2.36e+00 c.1.10.1 90514 1pk1B 89 2.43e+00 1up7A 417 2.62e+00 1f74A 293 2.83e+00 1nal3 c.1.10.1 29079 1j31A 262 3.08e+00 d.160.1.2 90808 1senA 164 3.12e+00 c.47.1.1 105465 1tv8A 340 3.13e+00 c.1.28.3 107352 1vpqA 273 3.43e+00 2b5eA 504 3.53e+00 1rypJ 204 3.54e+00 d.153.1.4 41878 1w7bA 339 3.57e+00 1b5qA 472 3.66e+00 1b37B c.3.1.2,d.16.1.5 30404,37968 2c6qA 351 3.93e+00 1dk8A 147 4.34e+00 1agrE a.91.1.1 18548 1wddS 128 4.47e+00 2a4aA 281 4.62e+00 1xk4C 113 4.75e+00 2f2lX 167 4.90e+00 1a76 326 4.93e+00 1a76 a.60.7.1,c.120.1.2 18091,33361 1q0uA 219 5.54e+00 c.37.1.19 95512 1ezwA 349 5.78e+00 1ezwA c.1.16.3 29558 1zx5A 300 5.80e+00 2ahqA 76 5.87e+00 1vqoS 85 5.88e+00 2c5rA 67 5.99e+00 1y9zA 441 6.17e+00 1lh0A 213 6.29e+00 c.61.1.1 73896 2fikA 287 6.34e+00 1fh9A 312 6.44e+00 1taxA c.1.8.3 28913 1t71A 281 6.70e+00 1ls1A 295 7.66e+00 a.24.13.1,c.37.1.10 78170,78171 1eokA 290 8.19e+00 1eokA c.1.8.5 28991 1ra6A 461 8.31e+00 e.8.1.4 104879 2plc 274 9.16e+00 2plc c.1.18.2 29614 1x0rA 249 9.20e+00 1uc7A 125 9.22e+00 c.47.1.1 99163 1keaA 221 9.29e+00 a.96.1.2 68491 2b18A 164 9.33e+00 1bw0A 416 1.01e+01 1bw0A c.67.1.1 34385 1n8jA 186 1.03e+01 c.47.1.10 85401 2bw0A 329 1.07e+01 1ubkL 534 1.07e+01 e.18.1.1 88422 1sv0C 82 1.07e+01 a.60.1.1 106037 1wuiL 534 1.09e+01 1zj6A 187 1.11e+01 1x42A 232 1.16e+01 1a8l 226 1.16e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1rie 129 1.17e+01 1rie b.33.1.1 24427 1xdnA 277 1.18e+01 1zemA 262 1.19e+01 1zx0A 236 1.19e+01 1yzfA 195 1.22e+01 1srrA 124 1.22e+01 1dz3A c.23.1.1 31110 1qf9A 194 1.26e+01 1zin c.37.1.1 31848 2fomB 185 1.27e+01 1c75A 71 1.27e+01 451c a.3.1.1 15796 1wh5A 80 1.27e+01 1xi7A 61 1.29e+01 1gvdA 52 1.36e+01 a.4.1.3 83338 1unlD 208 1.43e+01 2aa4A 289 1.54e+01 1ppjE 196 1.55e+01 b.33.1.1,f.23.12.1 104260,104261 1r7aA 504 1.55e+01 b.71.1.1,c.1.8.1 97192,97193 2bmaA 470 1.55e+01 1lmb3 92 1.61e+01 1lmb3 1x1tA 260 1.65e+01 1r9jA 673 1.66e+01 1fsgA 233 1.67e+01 1qk3A c.61.1.1 34029 2a97A 439 1.69e+01 1d4aA 273 1.72e+01 1d4aA c.23.5.3 31219 1wvqA 167 1.73e+01 1nnwA 252 1.73e+01 d.159.1.5 80674 1uptA 171 1.74e+01 c.37.1.8 99767 1mb3A 124 1.76e+01 c.23.1.1 78907 1hxhA 253 1.76e+01 c.2.1.2 76725 1tm9A 137 1.77e+01 a.225.1.1 107150 1g3qA 237 1.79e+01 1hyqA c.37.1.10 60237 1oz9A 150 1.80e+01 d.92.1.15 93808 2f2lA 167 1.81e+01 2czrA 226 1.85e+01 2basA 431 1.85e+01 1tc5A 194 1.93e+01 c.110.1.1 106752 1px5A 349 1.94e+01 a.160.1.2,d.218.1.6 95277,95278 1qgdA 662 2.01e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1q87A 221 2.06e+01 e.47.1.1 96192 1nu0A 138 2.06e+01 c.55.3.8 92165 1oj5A 132 2.10e+01 d.110.3.8 93087 1tz9A 367 2.17e+01 c.1.15.6 107466 1rz3A 201 2.20e+01 c.37.1.6 98132 2cybA 323 2.20e+01 2bkfA 87 2.24e+01 1d5rA 324 2.25e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1ju2A 536 2.37e+01 c.3.1.2,d.16.1.1 77169,77170 1q3eA 207 2.49e+01 b.82.3.2 95669 1h05A 146 2.58e+01 c.23.13.1 76433 1ve3A 227 2.58e+01 1kv5A 250 2.59e+01 c.1.1.1 73052 1xw8A 252 2.61e+01 1n55A 251 2.64e+01 c.1.1.1 80007 1w0mA 226 2.66e+01 c.1.1.1 109027 1ccwA 137 2.67e+01 1be1 c.23.6.1 31238 1jae 471 2.69e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1x8qA 184 2.70e+01 1i3zA 103 2.76e+01 d.93.1.1 83667 1lm4A 194 2.76e+01 d.167.1.1 84626 1cvrA 435 2.77e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 2al2A 436 2.79e+01 1a8y 367 2.80e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1pmhX 185 2.83e+01 b.18.1.18 104193 1m2oA 768 2.83e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 2as0A 396 2.86e+01 1yksA 440 2.86e+01 2essA 248 2.87e+01 1oihA 301 2.89e+01 b.82.2.5 93051 2erxA 172 2.90e+01 1bykA 255 2.95e+01 1bykA c.93.1.1 35706 2bnlA 136 2.96e+01 1jflA 228 2.97e+01 c.78.2.1,c.78.2.1 71656,71657 1qsgA 265 2.98e+01 1eny c.2.1.2 29935 1bx1A 314 2.99e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1xklA 273 3.00e+01 1gci 269 3.02e+01 1gci c.41.1.1 32503 1vicA 262 3.07e+01 c.68.1.13 100756 2fq4A 192 3.07e+01 2cokA 113 3.09e+01 2g40A 224 3.10e+01 1mnaA 298 3.11e+01 c.69.1.22 79322 2a5dA 175 3.16e+01 1aa6 715 3.19e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1wosA 364 3.22e+01 b.44.2.1,d.250.1.1 109468,109469 1oneA 436 3.23e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1gu2A 124 3.27e+01 a.3.1.1 76348 1ag9A 175 3.44e+01 1rcf c.23.5.1 31178 1lba 146 3.46e+01 1lba d.118.1.1 41062 2f3yA 148 3.49e+01 1uacH 114 3.52e+01 b.1.1.1 99132 1f5nA 592 3.57e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1ggzA 148 3.68e+01 a.39.1.5 70176 1ja1A 622 3.70e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1qqp2 218 3.71e+01 1qqp2 1vk9A 151 3.75e+01 c.139.1.1 108640 1vs0A 310 3.82e+01 1lm8V 160 3.82e+01 b.3.3.1 74035 2akzA 439 3.84e+01 1kl1A 419 3.89e+01 c.67.1.4 72663 1e4fT 419 3.90e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1kyfA 247 3.91e+01 b.1.10.1,d.105.1.1 73220,73221 2f5tX 233 3.92e+01 1o6dA 163 3.95e+01 c.116.1.3 92567 1yc7A 124 3.96e+01 1ye8A 178 3.99e+01 1xm7A 195 4.00e+01 1of8A 370 4.03e+01 c.1.10.4 92819 1yjsA 419 4.05e+01 2c7pA 327 4.07e+01 1iq4A 179 4.08e+01 1iq4A d.77.1.1 62641 2gaeA 346 4.11e+01 1wvhA 134 4.11e+01 1kte 105 4.13e+01 1kte c.47.1.1 32771 1ylmA 144 4.14e+01 1yckA 175 4.18e+01 1ra0A 430 4.18e+01 1q4rA 112 4.20e+01 d.58.4.4 95823 1b9mA 265 4.44e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1mqoA 227 4.44e+01 d.157.1.1 103846 1xjvA 294 4.53e+01 1y81A 138 4.53e+01 1zin 217 4.53e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1zmaA 118 4.58e+01 2ptd 298 4.64e+01 2plc c.1.18.2 29605 1f6bA 198 4.66e+01 c.37.1.8 64986 1bdb 277 4.78e+01 1bdb c.2.1.2 29874 2a4hA 126 4.78e+01 2f9lA 199 4.80e+01 1tqhA 247 4.80e+01 c.69.1.29 107225 1n9lA 109 4.81e+01 d.110.3.6 85468 1vdmA 153 4.92e+01 1j34B 123 4.93e+01 d.169.1.1 84049 1t0iA 191 4.93e+01 c.23.5.4 106209 1sk4A 163 4.96e+01 d.118.1.1 105664 1upvA 257 5.13e+01 1a53 247 5.17e+01 1a53 c.1.2.4 28564 1y60A 169 5.20e+01 1w27A 714 5.24e+01 1xu6A 80 5.32e+01 1s8nA 205 5.33e+01 c.23.1.1 105374 1m98A 317 5.39e+01 a.175.1.1,d.17.4.6 78866,78867 1kshA 186 5.39e+01 c.37.1.8 72914 1yhvA 297 5.39e+01 1ofcX 304 5.41e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1vgyA 393 5.44e+01 c.56.5.4,d.58.19.1 100620,100621 1vsrA 136 5.50e+01 1vsrA c.52.1.15 33332 1vkmA 297 5.51e+01 c.138.1.1 108670 1zaiA 363 5.52e+01 1afp 51 5.60e+01 1afp g.26.1.1 44947 1uqvA 85 5.63e+01 a.60.1.2 99798 2al1A 436 5.65e+01 1zarA 282 5.69e+01 2fazA 78 5.71e+01 1wdjA 187 5.75e+01 1sjdA 368 5.84e+01 c.1.11.2,d.54.1.1 105632,105633 1gpjA 404 5.89e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1fnd 314 5.90e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1adr 76 5.93e+01 1r69 a.35.1.2 17042 1ivyA 452 5.93e+01 1ivyA c.69.1.5 34654 1r3eA 309 5.94e+01 b.122.1.1,d.265.1.2 96907,96908 1qh8B 519 5.99e+01 1qguB c.92.2.3 35634 1wmiB 67 6.01e+01 1tjyA 316 6.02e+01 c.93.1.1 107062 1zavA 180 6.06e+01 2amxA 376 6.07e+01 1qtwA 285 6.10e+01 1qumA c.1.15.1 29392 1qb7A 236 6.16e+01 1qb7A c.61.1.1 34087 1t7lA 766 6.22e+01 2ca6A 386 6.22e+01 1fdr 248 6.30e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 2a0mA 316 6.35e+01 1g0oA 283 6.38e+01 1ybvA c.2.1.2 60181 1n82A 331 6.38e+01 c.1.8.3 91703 1im8A 244 6.47e+01 c.66.1.14 66212 1txlA 215 6.48e+01 b.60.1.4 107429 1r85A 379 6.53e+01 c.1.8.3 104839 1vjhA 122 6.53e+01 d.129.3.1 100811 1xteA 154 6.58e+01 1zm7A 230 6.65e+01 1o5xA 248 6.72e+01 c.1.1.1 92528 1kb9B 352 6.74e+01 d.185.1.1,d.185.1.1 77313,77314 2erbA 125 6.74e+01 1vi4A 174 6.81e+01 c.8.7.1 100731 1wt9B 123 6.81e+01 1umdA 367 6.84e+01 c.36.1.11 99599 1uv4A 293 6.86e+01 1xzpB 150 6.87e+01 1qzmA 94 6.89e+01 c.37.1.20 96651 1qusA 322 7.00e+01 1ltm d.2.1.6 36991 2ae0X 345 7.01e+01 1p5fA 189 7.01e+01 c.23.16.2 94142 1uw4B 248 7.03e+01 a.118.1.14 100072 2eboA 74 7.04e+01 2eboA h.3.2.1 45754 2trcP 217 7.10e+01 1b9yC c.47.1.6 33051 1wznA 252 7.15e+01 5hpgA 84 7.21e+01 5hpgA g.14.1.1 44642 1o98A 511 7.23e+01 c.105.1.1,c.76.1.3 86684,86685 1oeyJ 107 7.29e+01 d.15.2.2 92804 1oacA 727 7.30e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1h4xA 117 7.35e+01 1auz c.13.2.1 60626 2az4A 429 7.43e+01 1vkeA 133 7.48e+01 a.152.1.2 108650 1kwaA 88 7.49e+01 1kwaA b.36.1.1 24772 1oboA 169 7.51e+01 c.23.5.1 86776 1uekA 275 7.54e+01 d.14.1.5,d.58.26.5 88483,88484 1nn5A 215 7.66e+01 c.37.1.1 85892 2cfuA 658 7.75e+01 1t95A 240 7.77e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1zx1A 231 7.77e+01 2bwnA 401 7.90e+01 1rypH 205 7.94e+01 d.153.1.4 41876 1fr2A 86 7.95e+01 a.28.2.1 83256 1yxyA 234 8.12e+01 1f4pA 147 8.15e+01 5nul c.23.5.1 59651 1enfA 212 8.15e+01 3seb b.40.2.2,d.15.6.1 25198,37787 2c60A 111 8.15e+01 1mdbA 539 8.21e+01 e.23.1.1 79008 1gz2A 142 8.28e+01 d.169.1.1 83392 1oywA 523 8.28e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1ek0A 170 8.37e+01 1ctqA c.37.1.8 32076 1geeA 261 8.45e+01 c.2.1.2 90509 1wy7A 207 8.47e+01 1v8cA 168 8.58e+01 d.15.3.1,d.129.5.1 100495,100496 1vl5A 260 8.70e+01 c.66.1.41 108720 1jtdB 273 8.72e+01 b.69.5.2 67265 1a0p 290 8.75e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1u55A 188 8.75e+01 d.278.1.1 107677 1ei7A 158 8.76e+01 1rmvA a.24.5.1 16584 1pzxA 289 8.77e+01 c.119.1.1 95484 1ks9A 291 8.78e+01 a.100.1.7,c.2.1.6 68857,68858 2dri 271 8.80e+01 2dri c.93.1.1 35637 1xedA 117 8.87e+01 1h12A 405 8.89e+01 a.102.1.2 83447 1r75A 141 8.96e+01 b.134.1.1 97189 1ir21 140 8.98e+01