# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f8aA 208 9.23e-30 1xzoA 174 1.94e-12 1st9A 143 1.40e-09 c.47.1.10 98987 2f9sA 151 4.96e-09 1jfuA 186 5.86e-09 c.47.1.10 62940 2cvbA 188 9.29e-07 1xvwA 160 2.94e-05 1kngA 156 3.75e-05 c.47.1.10 72777 2b7kA 200 9.20e-05 1z5yE 149 1.73e-04 1zzoA 136 1.86e-04 2fy6A 143 1.99e-04 1lu4A 136 3.64e-04 c.47.1.10 91124 1o8xA 146 6.44e-04 c.47.1.10 86681 1qmvA 197 6.90e-04 1qq2A c.47.1.10 33066 1i5gA 144 1.36e-03 1ewxA c.47.1.10 61784 1t00A 112 1.17e-02 1erv 105 1.58e-02 1erv c.47.1.1 32743 1x0rA 249 2.36e-02 1r26A 125 3.86e-02 c.47.1.1 96847 1bvoA 175 6.06e-02 1a3qA b.2.5.3 22457 1thx 115 6.68e-02 1thx c.47.1.1 32732 1yvoA 172 1.04e-01 1faaA 124 1.24e-01 1erv c.47.1.1 32738 1uf5A 303 1.32e-01 d.160.1.2 107808 1erw 105 1.59e-01 1erv c.47.1.1 32745 1xccA 220 1.68e-01 2a4vA 159 1.78e-01 2trxA 108 2.65e-01 1thx c.47.1.1 32719 1n8jA 186 2.95e-01 c.47.1.10 85401 2f51A 118 3.07e-01 1o2dA 371 3.08e-01 e.22.1.2 86591 1w4vA 119 3.54e-01 1eejA 216 5.57e-01 1eejA c.47.1.9,d.17.3.1 33057,38071 1vicA 262 9.00e-01 c.68.1.13 100756 1oacA 727 9.61e-01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1xvqA 175 9.66e-01 1vs0A 310 1.02e+00 1kk1A 410 1.03e+00 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2axoA 270 1.26e+00 1fh9A 312 1.47e+00 1taxA c.1.8.3 28913 1oywA 523 1.48e+00 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1hh1A 143 1.51e+00 1gefA c.52.1.18 61036 1v98A 140 1.52e+00 1vhxA 150 1.65e+00 c.55.3.8 100712 1vpqA 273 1.80e+00 1uptA 171 1.89e+00 c.37.1.8 99767 1f1uA 323 2.04e+00 d.32.1.3,d.32.1.3 83200,83201 1e4fT 419 2.17e+00 1e4fT c.55.1.1,c.55.1.1 33453,33454 1szwA 379 2.24e+00 d.265.1.4 99047 1ars 396 2.63e+00 1ajsA c.67.1.1 34287 1g3qA 237 2.67e+00 1hyqA c.37.1.10 60237 1mdbA 539 2.76e+00 e.23.1.1 79008 1d2fA 390 2.94e+00 1d2fA c.67.1.3 34411 1xi7A 61 3.05e+00 2b5eA 504 3.11e+00 3tmkA 216 3.92e+00 3tmkA c.37.1.1 31920 1zj6A 187 3.93e+00 2a5dA 175 4.08e+00 1w8sA 263 4.30e+00 1hd2A 161 4.61e+00 c.47.1.10 60962 1ra0A 430 4.74e+00 2a5lA 200 4.78e+00 1yvrA 538 5.34e+00 1bykA 255 5.56e+00 1bykA c.93.1.1 35706 1a8l 226 5.66e+00 1a8l c.47.1.2,c.47.1.2 32777,32778 1wvqA 167 5.71e+00 1f74A 293 5.77e+00 1nal3 c.1.10.1 29079 1nswA 105 5.89e+00 c.47.1.1 92097 1n3lA 372 5.95e+00 c.26.1.1 79966 2czrA 226 6.10e+00 2g5cA 281 6.71e+00 1b5qA 472 6.86e+00 1b37B c.3.1.2,d.16.1.5 30404,37968 1qsgA 265 6.86e+00 1eny c.2.1.2 29935 1vmeA 410 7.02e+00 c.23.5.1,d.157.1.3 108893,108894 1nu0A 138 7.17e+00 c.55.3.8 92165 1t5bA 201 8.80e+00 c.23.5.3 106433 1io2A 213 8.86e+00 1ekeA c.55.3.1 62612 1vixA 420 8.89e+00 c.56.5.4,d.58.19.1 100777,100778 1wxxA 382 9.00e+00 1z7gA 217 9.45e+00 8rucI 123 9.60e+00 1rboC d.73.1.1 39629 2f1rA 171 9.96e+00 1u1iA 392 9.98e+00 c.2.1.3,d.81.1.3 107582,107583 2c1lA 358 1.02e+01 1t1uA 639 1.10e+01 1oz9A 150 1.11e+01 d.92.1.15 93808 1pea 385 1.12e+01 1pea c.93.1.1 35662 2az4A 429 1.12e+01 1up7A 417 1.13e+01 2cokA 113 1.13e+01 2ca6A 386 1.21e+01 1e5dA 402 1.23e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1g5cA 170 1.23e+01 1g5cA c.53.2.1 60264 1nn5A 215 1.25e+01 c.37.1.1 85892 1zr6A 503 1.25e+01 1hgxA 183 1.27e+01 1tc1A c.61.1.1 34027 1pch 88 1.29e+01 1ptf d.94.1.1 40564 1nsj 205 1.30e+01 1nsj c.1.2.4 28560 2fqxA 318 1.32e+01 1gteA 1025 1.32e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1ad2 228 1.36e+01 1ad2 e.24.1.1 43353 1vk9A 151 1.36e+01 c.139.1.1 108640 2trcP 217 1.36e+01 1b9yC c.47.1.6 33051 2c6qA 351 1.39e+01 1t71A 281 1.42e+01 1y9zA 441 1.44e+01 1fxoA 293 1.46e+01 1g0rA c.68.1.6 34524 1uf3A 228 1.52e+01 d.159.1.6 99317 1gheA 177 1.52e+01 d.108.1.1 76222 1w77A 228 1.61e+01 1rz3A 201 1.61e+01 c.37.1.6 98132 1w1hA 151 1.64e+01 2c46A 241 1.66e+01 1jhdA 396 1.72e+01 b.122.1.3,c.26.1.5 66712,66713 1hrhA 136 1.77e+01 1rthA c.55.3.1 33577 2c1iA 431 1.81e+01 1nowA 507 1.82e+01 c.1.8.6,d.92.2.1 85936,85937 1yx1A 264 1.82e+01 1bw0A 416 1.83e+01 1bw0A c.67.1.1 34385 1fsgA 233 1.85e+01 1qk3A c.61.1.1 34029 1vflA 356 1.92e+01 1n7hA 381 1.92e+01 c.2.1.2 80250 1ta3B 303 1.93e+01 c.1.8.3 106732 1zbqA 327 1.99e+01 3cla 213 2.01e+01 3cla c.43.1.1 32610 1wqaA 455 2.02e+01 2fneA 117 2.07e+01 2fikA 287 2.08e+01 1g0cA 364 2.09e+01 7a3hA c.1.8.3 60165 2ae0X 345 2.14e+01 1ls1A 295 2.15e+01 a.24.13.1,c.37.1.10 78170,78171 2erxA 172 2.17e+01 1m2dA 110 2.17e+01 c.47.1.11 78476 1q42A 201 2.22e+01 d.17.4.2 95776 1jfrA 262 2.22e+01 1jfrA c.69.1.16 34724 1r9jA 673 2.27e+01 2fomB 185 2.28e+01 1twdA 256 2.33e+01 c.1.30.1 107397 1qqp2 218 2.34e+01 1qqp2 2gaeA 346 2.37e+01 1vdmA 153 2.40e+01 1qj4A 257 2.41e+01 1qj4A c.69.1.20 34796 1gqzA 274 2.42e+01 d.21.1.1,d.21.1.1 83311,83312 1ixh 321 2.43e+01 1ixh c.94.1.1 35761 2bw0A 329 2.43e+01 1tv8A 340 2.46e+01 c.1.28.3 107352 1m6kA 251 2.47e+01 e.3.1.1 78695 2ae6A 166 2.58e+01 1wosA 364 2.63e+01 b.44.2.1,d.250.1.1 109468,109469 1dcjA 81 2.73e+01 1dcjA d.68.3.3 59115 1h65A 270 2.75e+01 c.37.1.8 65640 1sg0A 230 2.75e+01 1u0kA 288 2.77e+01 d.21.1.2,d.21.1.2 107547,107548 1ei9A 279 2.79e+01 1ei9A c.69.1.13 34713 1px5A 349 2.81e+01 a.160.1.2,d.218.1.6 95277,95278 1ns5A 155 2.83e+01 c.116.1.3 80705 1j05B 121 2.84e+01 b.1.1.1 90736 1aa6 715 2.85e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1i52A 236 2.85e+01 1i52A c.68.1.13 61767 1m7yA 435 2.90e+01 c.67.1.4 78761 1v5vA 401 3.09e+01 1ohvA 472 3.10e+01 c.67.1.4 93031 1ecfA 504 3.16e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1f35A 162 3.20e+01 1f35A b.94.1.1 59628 2f2lA 167 3.22e+01 1s95A 333 3.26e+01 d.159.1.3 105375 1r5yA 386 3.38e+01 c.1.20.1 97134 1wsrA 375 3.40e+01 2b9wA 424 3.43e+01 1q25A 432 3.45e+01 b.64.1.1,b.64.1.1,b.64.1.1 104493,104494,104495 1zx1A 231 3.46e+01 1ob8A 135 3.51e+01 1rxdA 159 3.52e+01 1nf3C 128 3.53e+01 b.36.1.1 85596 1aba 87 3.56e+01 1aba c.47.1.1 32760 1xdnA 277 3.58e+01 1vjoA 393 3.67e+01 c.67.1.3 100827 1wh5A 80 3.67e+01 1ovnA 248 3.80e+01 a.71.1.1,c.47.1.7 93602,93603 1geeA 261 3.81e+01 c.2.1.2 90509 1oboA 169 3.82e+01 c.23.5.1 86776 1kllA 130 3.84e+01 d.32.1.2 72720 1z3eA 132 3.85e+01 1vlbA 907 3.96e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1mp9A 198 3.97e+01 d.129.1.1,d.129.1.1 91385,91386 1qmgA 524 3.97e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 1obbA 480 4.00e+01 c.2.1.5,d.162.1.2 86760,86761 1senA 164 4.01e+01 c.47.1.1 105465 1f89A 291 4.03e+01 d.160.1.1 64988 1n2eA 300 4.04e+01 c.26.1.4 85268 1prxA 224 4.04e+01 1prxA c.47.1.10 33076 1k8wA 327 4.04e+01 b.122.1.1,d.265.1.2 83094,90388 1tmy 120 4.08e+01 1dbwA c.23.1.1 31083 1a0jA 223 4.08e+01 5ptp b.47.1.2 26002 1mxmA 254 4.09e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1fnd 314 4.11e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1t7lA 766 4.12e+01 2cu5A 129 4.14e+01 1qb5D 99 4.15e+01 b.40.2.1 88357 1ecsA 126 4.17e+01 1ecsA d.32.1.2 59407 1gz2A 142 4.21e+01 d.169.1.1 83392 1o5kA 306 4.25e+01 c.1.10.1 92504 1bx1A 314 4.26e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1sbyA 254 4.31e+01 1x1tA 260 4.42e+01 1n67A 359 4.43e+01 b.2.3.4,b.2.3.4 85354,85355 2c7pA 327 4.44e+01 1s8nA 205 4.45e+01 c.23.1.1 105374 1n9lA 109 4.53e+01 d.110.3.6 85468 1xm7A 195 4.54e+01 1d4aA 273 4.54e+01 1d4aA c.23.5.3 31219 1yumA 242 4.62e+01 1gxuA 91 4.65e+01 d.58.10.1 76378 1yjsA 419 4.72e+01 2plc 274 4.75e+01 2plc c.1.18.2 29614 1uwzA 136 4.78e+01 c.97.1.1 108081 1tp9A 162 4.81e+01 1yymG 313 4.84e+01 2c5qA 240 4.87e+01 1zkcA 197 4.88e+01 2azpA 318 4.89e+01 1rl6A 177 4.97e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 2givA 295 5.00e+01 1kl1A 419 5.01e+01 c.67.1.4 72663 1h4wA 224 5.02e+01 b.47.1.2 65622 1nf2A 268 5.05e+01 c.108.1.10 91849 1obfO 335 5.07e+01 c.2.1.3,d.81.1.1 86768,86769 1qhtA 775 5.07e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1ohtA 215 5.08e+01 d.118.1.1 87036 2bgcA 238 5.09e+01 1in0A 163 5.09e+01 d.58.49.1,d.58.49.1 83694,83695 1v3vA 333 5.10e+01 b.35.1.2,c.2.1.1 108345,108346 1t64A 377 5.10e+01 c.42.1.2 106543 1kxoA 184 5.11e+01 b.60.1.1 84475 1ufoA 238 5.13e+01 c.69.1.27 99344 1ho8A 480 5.14e+01 1ho8A a.118.1.9 61107 1y7qA 98 5.14e+01 1vzwA 244 5.14e+01 1lm8V 160 5.17e+01 b.3.3.1 74035 1v0lA 313 5.24e+01 c.1.8.3 108207 1nm8A 616 5.26e+01 c.43.1.3,c.43.1.3 85872,85873 1eokA 290 5.36e+01 1eokA c.1.8.5 28991 1wvhA 134 5.44e+01 1u6tA 121 5.46e+01 1f1xA 322 5.49e+01 d.32.1.3,d.32.1.3 83208,83209 1ye8A 178 5.53e+01 2f4nA 273 5.61e+01 2bkkA 264 5.62e+01 1unqA 125 5.64e+01 b.55.1.1 107968 2a84A 300 5.65e+01 2cybA 323 5.65e+01 1xg5A 279 5.68e+01 2f9lA 199 5.68e+01 1u7eB 154 5.69e+01 1dqwA 267 5.72e+01 1dqwA c.1.2.3 28551 2rslA 140 5.73e+01 2rslA c.53.1.1 33345 1lba 146 5.78e+01 1lba d.118.1.1 41062 1vkpA 383 5.80e+01 d.126.1.6 108686 1nnvA 110 5.81e+01 d.17.7.1 92012 1n55A 251 5.83e+01 c.1.1.1 80007 1ykwA 435 5.86e+01 1b5pA 385 5.87e+01 c.67.1.1 90403 1xx6A 191 5.88e+01 1jakA 512 5.95e+01 c.1.8.6,d.92.2.1 66472,66473 1sgvA 316 6.05e+01 b.122.1.1,d.265.1.2 98858,98859 1u0sY 118 6.05e+01 c.23.1.1 107566 2c2nA 339 6.05e+01 1eg5A 384 6.09e+01 1ecxA c.67.1.3 34429 1q0uA 219 6.10e+01 c.37.1.19 95512 1lwdA 413 6.15e+01 c.77.1.1 78265 1w3iA 293 6.15e+01 c.1.10.1 109152 2bpa1 426 6.15e+01 2bpa1 1s3sG 127 6.18e+01 d.15.1.2 98457 2cxcA 144 6.23e+01 1yzfA 195 6.26e+01 1zo0A 126 6.26e+01 2cr4A 126 6.27e+01 1lvaA 258 6.32e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1jf9A 408 6.34e+01 1c0nA c.67.1.3 62931 2gkeA 274 6.39e+01 1kao 167 6.40e+01 1ctqA c.37.1.8 32014 1vmoA 163 6.42e+01 1vmoA b.77.1.1 27974 1wleA 501 6.42e+01 2bbsA 290 6.44e+01 1v74A 107 6.44e+01 d.243.1.1 100442 1pcfA 66 6.49e+01 1pcfA d.18.1.1 38142 1xewX 182 6.54e+01 1pdo 135 6.61e+01 1pdo c.54.1.1 33376 1wycA 392 6.64e+01 1mvuB 121 6.72e+01 b.1.1.1 91475 1wddS 128 6.73e+01 2btoA 473 6.74e+01 2ciaA 102 6.77e+01 1kb9B 352 6.77e+01 d.185.1.1,d.185.1.1 77313,77314 2fp4B 395 6.79e+01 1e6wA 260 6.79e+01 1e6wA c.2.1.2 59326 2a6zA 222 6.83e+01 1ycoA 279 6.84e+01 1qo7A 394 6.85e+01 1qo7A c.69.1.11 34697 1wwtA 88 6.92e+01 1pzxA 289 6.92e+01 c.119.1.1 95484 1t13A 158 6.94e+01 1jbwA 428 6.96e+01 c.59.1.2,c.72.2.2 62860,62861 1x8hA 228 6.97e+01 1efvB 255 6.98e+01 1efvB c.26.2.3 31634 2fhzB 108 7.09e+01 1ihoA 283 7.13e+01 1ihoA c.26.1.4 62390 1hjrA 158 7.21e+01 1hjrA c.55.3.6 33727 1uasA 362 7.21e+01 b.71.1.1,c.1.8.1 88388,88389 1m98A 317 7.25e+01 a.175.1.1,d.17.4.6 78866,78867 1j09A 468 7.31e+01 a.97.1.1,c.26.1.1 77025,77026 2fazA 78 7.34e+01 1t6cA 315 7.34e+01 c.55.1.8,c.55.1.8 106558,106559 1cozA 129 7.44e+01 1cozA c.26.1.2 31598 1qkkA 155 7.46e+01 1dbwA c.23.1.1 31104 1xrkA 124 7.52e+01 1q3iA 214 7.52e+01 d.220.1.1 104524 1vq0A 302 7.55e+01 2cdpA 160 7.57e+01 1vzoA 355 7.62e+01 d.144.1.7 108971 2ahqA 76 7.66e+01 1z7xW 461 7.68e+01 1ylmA 144 7.70e+01 1tjyA 316 7.74e+01 c.93.1.1 107062 1rljA 139 7.78e+01 c.23.5.7 104983 1ttwA 138 7.83e+01 d.198.1.1 107308 1um5H 217 7.85e+01 1tz9A 367 7.91e+01 c.1.15.6 107466 1ag9A 175 7.99e+01 1rcf c.23.5.1 31178 1vkdA 338 8.07e+01 b.67.2.4 108644 1o5xA 248 8.09e+01 c.1.1.1 92528 1iq4A 179 8.16e+01 1iq4A d.77.1.1 62641 1vl7A 157 8.20e+01 b.45.1.1 108732 1im8A 244 8.20e+01 c.66.1.14 66212 1fy7A 278 8.23e+01 1fy7A d.108.1.1 40817 1pj5A 830 8.39e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1ek0A 170 8.39e+01 1ctqA c.37.1.8 32076 1wbiA 129 8.42e+01 2furA 209 8.46e+01 1eljA 381 8.47e+01 4mbp c.94.1.1 35791 1b3tA 147 8.49e+01 1b3tA d.58.8.1 39228 1w6uA 302 8.53e+01 1x8gA 227 8.56e+01 1uv7A 110 8.57e+01 d.67.4.1 100040 1sviA 195 8.57e+01 c.37.1.8 106048 1rurH 218 8.60e+01 b.1.1.1,b.1.1.2 97879,97880 1zfjA 491 8.62e+01 1ak5 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1ro5A 201 8.65e+01 d.108.1.3 105023 1jdw 423 8.72e+01 1jdw d.126.1.2 41129 1eerB 227 8.72e+01 1eerB b.1.2.1,b.1.2.1 22011,22012 1tc5A 194 8.73e+01 c.110.1.1 106752 2ptd 298 8.75e+01 2plc c.1.18.2 29605 1xf1A 926 8.75e+01 2ga9A 297 8.82e+01 1mwmA 320 8.89e+01 c.55.1.1,c.55.1.1 79580,79581 1txlA 215 8.93e+01 b.60.1.4 107429 2calA 154 8.93e+01